cluster # 9676

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Oryza sativa
cluster # 9676 cluster # 9676 Sequences # 6 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9676#0 length = 896 sequences # 3

consensus_9676#1 length = 311 sequences # 2
consensus_9676#2 length = 201 sequences # 1

consensusID : consensus_9676#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 896
fasta sequence

                              [TATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTCCTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTAGCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATAATATTCTTATTGATTTGTAATGTGGATGAAGAAAATTGCAGGCTGGGGAATCTTGGGGGCACTTGAGCCCGGGTTACAGTTGATTCGAGCATCATACAATCATTTAATTTATATTTTTAAAGAATATACGTGGTGGTTCTATACTGTATAACTGGCACCTTATTTGGGACCGGGAAAGGTGCCCTTAAATTGGTCCCCATTTAGGAAAAACGATCCCTTATAAGGGTTCCTAACCCAACACCAATGGAATGGGCTTTTATGGGTGGCCCATTTTTTAAAAAAACAAAAATCAC]

[+] EMBL BE040140             [TATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTCCTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTAGCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGATTAGCTTGTTCTTGGCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATAATATTCTTATTGATTTGTAATGTGGATGAAGAAAATTGCAGGCTGGGGAATCTTGGGGGCACTTGAGCCCGGGTTACAGTTGATTCGAGCATCATACAATCATTTAATTTATATTTTTAAAGAATATACGTGGTGGTTCTATACTGTATAACTGGCACCTTATTTGGGACCGGGAAAGGTGCCCTTAAATTGGTCCCCATTTAGGAAAAACGATCCCTTATAAGGGTTCCTAACCCAACACCAATGGAATGGGCTTTTATGGGTGGCCCATTTTTTAAAAAAACAAAAATCAC]
[-] EMBL CB630103             [                                                                                             ACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTCCTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTAGCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGATTAGCTGGGTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTcaaaaaag                                                                                                                                                                                                                                                                                                                    ]
[-] EMBL CB634602             [                                                                                                TCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTCCTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTAGCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATCCAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGTCTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGATGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATATGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATAaaaaaaaga                                                                                                                                                                                                                                                                                                                                     ]




>consensus_9676#0
TATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGA
AGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCC
CACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTC
CTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTA
GCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATC
CAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGT
CTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGA
TGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAA
TGGTTGGGTATGGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGATTA
GCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCT
ATAATATTCTTATTGATTTGTAATGTGGATGAAGAAAATTGCAGGCTGGGGAATCTTGGG
GGCACTTGAGCCCGGGTTACAGTTGATTCGAGCATCATACAATCATTTAATTTATATTTT
TAAAGAATATACGTGGTGGTTCTATACTGTATAACTGGCACCTTATTTGGGACCGGGAAA
GGTGCCCTTAAATTGGTCCCCATTTAGGAAAAACGATCCCTTATAAGGGTTCCTAACCCA
ACACCAATGGAATGGGCTTTTATGGGTGGCCCATTTTTTAAAAAAACAAAAATCAC

consensusID : consensus_9676#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 311
fasta sequence

                              [CCCCGCCGCCACTGCCGCTCCGGCCCCCGCCCACGCCTGGCATCCTCCTCCTCTTCGTCCGCTGAGTATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGACGCTTCCACCTCAAGGATGCCTCATCCCATTGGACCTGACTCTCACGAGGCTAGATTGATCTAGGCTA]

[+] EMBL CB634601             [CCCCGCCGCCACTGCCGCTCCGGCCCCCGCCCACGCCTGGCATCCTCCTCCTCTTCGTCCGCTGAGTATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGACGCTTCCACCTCAAGGATGCCTCATCCCATTGGACCTGACTCTCACGAGGCTAGATTGATCTAGGCTA]
[+] EMBL CB630102             [                                      GGCATCCTCCTCCTCTTCGTCCGCTGAGTATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTC                                                                             ]




>consensus_9676#1
CCCCGCCGCCACTGCCGCTCCGGCCCCCGCCCACGCCTGGCATCCTCCTCCTCTTCGTCC
GCTGAGTATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCT
GGGGGAAGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACC
CCTGCCCACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATC
TGACGCTTCCACCTCAAGGATGCCTCATCCCATTGGACCTGACTCTCACGAGGCTAGATT
GATCTAGGCTA

consensusID : consensus_9676#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 201
fasta sequence

                              [CGAGACAAGGGGGGGATGGTGAGTATGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTAATCTATGTGAATTGTTCTGATTTGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATCATATTCTTATTGNTTTGTAAAAAAAAAAAAAAAA]

[-] EMBL CA760140             [CGAGACAAGGGGGGGATGGTGAGTATGATATGTTGGGCATGTAATGGTTGGGTATGGCGGAAGATTTTAATCTATGTGAATTGTTCTGATTTGGGATGTGATTAGCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATCATATTCTTATTGNTTTGTAAAAAAAAAAAAAAAA]




>consensus_9676#2
CGAGACAAGGGGGGGATGGTGAGTATGATATGTTGGGCATGTAATGGTTGGGTATGGCGG
AAGATTTTAATCTATGTGAATTGTTCTGATTTGGGATGTGATTAGCTTGTTCTTGTCTTC
TTGATATGTGATGTGCTTTTTTGTTGTTGATGTGTGCATATGCTATCATATTCTTATTGN
TTTGTAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9676#0      TATAGCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGGGA 60
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ------------------------------------------------------------
                                                                                  

consensus_9676#0      AGTGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTGCTGCTTCGACCCCTGCC 120
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ------------------------------------------------------------
                                                                                  

consensus_9676#0      CACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGCCTC 180
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ------------------------------------------------------------
                                                                                  

consensus_9676#0      CTCCTCCTCACCACTTCCTCGTCGCCTTCGAGCTCTCTCTCCCTAGCCGCGCTTGATCTA 240
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ------------------------------------------------------------
                                                                                  

consensus_9676#0      GCCGCCTAGAGGTCAGGGACCGTCGGATCTGACCTCCTTGAGGTCGGAGCACGCTGGATC 300
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ------------------------------------------------------------
                                                                                  

consensus_9676#0      CAGCCGCAGCCGACCTCACTATCATGGATCACCTCACACGCACTCGGGGGCTGGTGTGGT 360
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      --------------------------------------------------CCCCGCCGCC 10
                                                                                  

consensus_9676#0      CTGGCTGGAAGGAGATGATGGTAGCGACGGCTCGAAGGAGATAAGCAGCAAGGGAATCGA 420
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ACTGCCGCTCCGGCCCCCGCCCACGCCTGGCATCCTCCTCCTCTTCGTCCGCTGAGTATA 70
                                                                                  

consensus_9676#0      TGACGACGGCAGCAGATCCACATCCACTGGGATGGTGAGTCTGATATGTTGGGCATGTAA 480
consensus_9676#2      -------------CGAGACAAG---GGGGGGATGGTGAGTATGATATGTTGGGCATGTAA 44
consensus_9676#1      GCGAGTCGGCGGCTGAGGGAGCGATGGCCTCAGAGCAGAGATGGTAGGCTGGGG--GAAG 128
                                    **   *           *  *      ** ** * ****   * * 

consensus_9676#0      TGGTTGGGTAT--GGCGGAAGATTTTGATCTATGTGAATTGTTCTGATCTGGGATGTGAT 538
consensus_9676#2      TGGTTGGGTAT--GGCGGAAGATTTTAATCTATGTGAATTGTTCTGATTTGGGATGTGAT 102
consensus_9676#1      TGGACGAGTTCTAGGTGGCCGCCACTACTCCACCTCCACTG--CTGCTTCGACCCCTGCC 186
                      ***  * **    ** **  *    *  ** *  *  * **  *** *  *     **  

consensus_9676#0      TA---------GCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGT 589
consensus_9676#2      TA---------GCTTGTTCTTGTCTTCTTGATATGTGATGTGCTTTTTTGTTGTTGATGT 153
consensus_9676#1      CACTCCTGGCCACCTCCTCCTCTCTGTCCATCGCCTCTCCTCCTCCTCCTCATCTGACGC 246
                       *          * *  ** * ***          *    * **  *       *** * 

consensus_9676#0      GTGCATAT----GCTATAATATTCTTATTGATTTGTAATGTGGATGAAGAAAATTGCAGG 645
consensus_9676#2      GTGCATAT----GCTATCATATTCTTATTGNTTTGTAAAAAAAAAAAAAAAA-------- 201
consensus_9676#1      TTCCACCTCAAGGATGCCTCATCCCATTGGACCTGACTCTCACGAGGCTAGATTGATCTA 306
                       * **  *    * *     ** *   * *   **              * *        

consensus_9676#0      CTGGGGAATCTTGGGGGCACTTGAGCCCGGGTTACAGTTGATTCGAGCATCATACAATCA 705
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      GGCTA------------------------------------------------------- 311
                                                                                  

consensus_9676#0      TTTAATTTATATTTTTAAAGAATATACGTGGTGGTTCTATACTGTATAACTGGCACCTTA 765
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ------------------------------------------------------------
                                                                                  

consensus_9676#0      TTTGGGACCGGGAAAGGTGCCCTTAAATTGGTCCCCATTTAGGAAAAACGATCCCTTATA 825
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ------------------------------------------------------------
                                                                                  

consensus_9676#0      AGGGTTCCTAACCCAACACCAATGGAATGGGCTTTTATGGGTGGCCCATTTTTTAAAAAA 885
consensus_9676#2      ------------------------------------------------------------
consensus_9676#1      ------------------------------------------------------------
                                                                                  

consensus_9676#0      ACAAAAATCAC 896
consensus_9676#2      -----------
consensus_9676#1      -----------