These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9680#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 840 fasta sequence [NNNTTTTTTNTNTTTAGTTNNNAATGTGAAAATTTTGACTTGAACTGAACA-GGGTTCAATGTACAAGAACATAAAGCATCACTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCTTTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT-CCTCTGCCTATATCACACTTGCCACTTACACCCATGCAATCTTCTCA-GTGGCAGTTGAT-TGCATCACTTGTTTGGT-TGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCGGATCCTCCATGGCGCAATCACAATGATTTGATTTTTTTTCTCTTTTGTTTTTTTGATGAGGTGTTCTTGGACGACAAAGATGGAAGTACTACCAAACTGTCACAATTCCTTTTTACCCTCTAAATAATCATCCTCTCTAAGGCTAAGTTTAATTATGTCATCAAAGACAAGAACAGGAAAAAAGGAGGAGGAGGAGGAGGTGAAAACTGGAAGAGCAATGACAAATAGCAGCAGCAACACAAGAACAGCAGCAACAAATGGGGAGGGGCAAGAGTTTTGGGAGCAAT] [-] EMBL BE040312 [NNNTTTTTTNTNTTTAGTTNNNAATGTGAAAATTTTGACTTGAACTGAACA GGGTTCAATGTACAAGAACATAAAGCATCACTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCTTTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT CCTCTGCCTATATCACACTTGCCACTTACACCCATGCAATCTTCTCA GTGGCAGTTGAT TGCATCACTTGTTTGGT TGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAACTTGACCC ] [-] EMBL BQ906729 [ ttttttAATGTGAAAATTTTGACTTGAACTGAACAGGGGTTCAATGTACAAGAACATAAAGCATCACTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCTTTTTTTTTTCTTTCATCTCACGG TACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTGGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAATCCCTCTGCCTATATCACACTTGCCACTTACA CCATGCAATCTTCTCAGGTGGCAGTTGATGTGCATCACTTG TTGGTCTGGAGTTGTATCACTCAAGAACCAAGTGAGTGA ] [-] EMBL BQ907552 [ tttttttttTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCTTTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT CCTCTGCCTATATCACACTTGCCACTTACACCCATGCA ] [+] EMBL CB680832 [ TCCTTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTACAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT CCTCTGCCTATATCACACTTGCCAATTACACCCATGCAATCTTCTCA GTGGCAGTTGAT TGCATCACTTGTTTGGT TGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCGGATCCTCCATGGCGCAATCACAATGATTTGATTTTTTTTCTCTTTTGTTTTTTTGATGAGGTGTTCTTGGACGACAAAGATGGAAGTACTACCAAACTGTCACAATTCCTTTTTACCCTCTAAATAATCATCCTCTCTAAGGCTAAGTTTAATTATGTCATCAAAGACAAGAACAGGAAAAAAGGAGGAGGAGGAGGAGGTGAAAACTGGAAGAGCAATGACAAATAGCAGCAGCAACACAAGAACAGCAGCAACAAATGGGGAGGGGCAAGAGTTTTGGGAGCAAT] [-] EMBL CA998749 [ CTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAAT CCTCTGCCTATATCACACTTGCCAATTACACCCATGCAATCTTCTCA GTGGCAGTTGAT TGCATCACTTGTTTGGT TGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCGGATCATCCATGGCGCAATCACAATGATTTGATTTTTTTTCTCTTTTG TTTTTTGATGAGGTGTTCTTGGACGACAAAGATGGAAGTACTACCAAACTGTCACAATTCCTTTTTACCCTCTAAATAATCATCCTCTCTAAGGCTAAGTTTAATTATGTCATCAAAGACAAGAACAGGAGAAGAGGAGGAGGAGGAGGAGGTGAGAACTGAAAGAGCAATGACAAATAGCAGCAGCAACACAAGAA ] consensusID : consensus_9680#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 447 fasta sequence [TTTTTTTTTTTTTTCATCTCACGGCTACAAGGAAAACGAGAGGCAATTTACCGCTAATTTACAAGGGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATAAATCTCTTTGGCCACTCGAAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAAAATTATTCATCTCCTGGAGGGGGTCCTTGCCAATTATTCAATCCTCTGCCTATATCACACTTGCCACTTACACCCATGCAATCTTCTCAGGGGCAGTTGATTGCATCACTTGTTTGGTTGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCTTGTCTCGTCCTCT] [+] EMBL CA761388 [TTTTTTTTTTTTTTCATCTCACGGCTACAAGGAAAACGAGAGGCAATTTACCGCTAATTTACAAGGGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACATACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATAAATCTCTTTGGCCACTCGAAAGATGATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTAATCCTCAAAATTATTCATCTCCTGGAGGGGGTCCTTGCCAATTATTCAATCCTCTGCCTATATCACACTTGCCACTTACACCCATGCAATCTTCTCAGGGGCAGTTGATTGCATCACTTGTTTGGTTGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAGCAATTTGACCCCTTGTCTCGTCCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9680#0 NNNTTTTTTNTNTTTAGTTNNNAATGTGAAAATTTTGACTTGAACTGAACAGGGTTCAAT 60 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 GTACAAGAACATAAAGCATCACTGTACTAGCACAACTCAAGAAGATCTTCTTCTCTCTCT 120 consensus_9680#1 -----------------------------------------------------------T 1 * consensus_9680#0 TTTTTTTTTCTTTCATCTCACGGCTACGAGGAAAACGAGAGGCAATTTACCGCTGATTTA 180 consensus_9680#1 TTTTTTTTTTTTTCATCTCACGGCTACAAGGAAAACGAGAGGCAATTTACCGCTAATTTA 61 ********* ***************** ************************** ***** consensus_9680#0 CAAGTGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACA 240 consensus_9680#1 CAAGGGATTGCTACTACAAACAAACTCCAATTCGAGTTGCTCTGAAACCCTTGCTACACA 121 **** ******************************************************* consensus_9680#0 TACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATGAATCTCTTTGGCCACTCGGAAGAT 300 consensus_9680#1 TACTCCTCAAAACACTAAGGTAGAAGCTAAGCTATAAATCTCTTTGGCCACTCGAAAGAT 181 *********************************** ****************** ***** consensus_9680#0 GATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTA 360 consensus_9680#1 GATCTGAGCTCACCAAGACATGCCTAATTATCATCATTCATTCACAACAAATAAAGCTTA 241 ************************************************************ consensus_9680#0 ATCCTCAGAATTATTCATCTCCTGGAGTGGGTCCTTGCCAATTATTCAATCCTCTGCCTA 420 consensus_9680#1 ATCCTCAAAATTATTCATCTCCTGGAGGGGGTCCTTGCCAATTATTCAATCCTCTGCCTA 301 ******* ******************* ******************************** consensus_9680#0 TATCACACTTGCCACTTACACCCATGCAATCTTCTCAGTGGCAGTTGATTGCATCACTTG 480 consensus_9680#1 TATCACACTTGCCACTTACACCCATGCAATCTTCTCAGGGGCAGTTGATTGCATCACTTG 361 ************************************** ********************* consensus_9680#0 TTTGGTTGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAG 540 consensus_9680#1 TTTGGTTGGAGTTGTATCACTCAAGAACCAAGTGAGTGACAGTCACCAGGATGAGCAGAG 421 ************************************************************ consensus_9680#0 CAATTTGACCCCGGATCCTCCATGGCGCAATCACAATGATTTGATTTTTTTTCTCTTTTG 600 consensus_9680#1 CAATTTGACCCCTTGTCTCGTCCTCT---------------------------------- 447 ************ ** consensus_9680#0 TTTTTTTGATGAGGTGTTCTTGGACGACAAAGATGGAAGTACTACCAAACTGTCACAATT 660 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 CCTTTTTACCCTCTAAATAATCATCCTCTCTAAGGCTAAGTTTAATTATGTCATCAAAGA 720 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 CAAGAACAGGAAAAAAGGAGGAGGAGGAGGAGGTGAAAACTGGAAGAGCAATGACAAATA 780 consensus_9680#1 ------------------------------------------------------------ consensus_9680#0 GCAGCAGCAACACAAGAACAGCAGCAACAAATGGGGAGGGGCAAGAGTTTTGGGAGCAAT 840 consensus_9680#1 ------------------------------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||