These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9687#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1110 fasta sequence [CCTTCTTTTTTTTGAGGTAAAAGAAATATTTAGTTGGCAAAGTTATCTTTTTACAATTGTAAGACTGGTGTCGCCTACTATGAACAATATGCCAGGGCATGGGCGTAGCTGATTGGTCGACATGTCAAAGAAACATTTACATTAAGAAACTGTATTCCAGCATCAAGGCACTGAATTATCTCATTACTTGTACTGCTCTCTACTCTGACAAACATCCCTATAGGCTTAATTATAGGGCTGGGGACGACGACCACCAACATGGAGATATATAACGACAAAATTTTAGTGACCACACTCAAGATGCAGCTTGGGCAGCACCAAGTTTGTTAGCACCCTTGTCGACTTTCTTCTTTGTCCCCTTCTTTTCAGATTTCTCCTCTTCTTGGTTCTTCATCACTGGCTTGAACTGATAAACAGAGTAAATTACATTCCGTCGAATTTGAGCCATCATATCCAAGAAAAGATTATATCCCTCCAGTTTATATTCAATAAGAGGATCTCGTTGGGCGTAACCCCTCAAACCAACAGCCTGTTGCACAAACTTCAATGCCTGCAAGTGTTCCTTCCAGAGCCTATCAATGTTGCTTAGAATAAGGAACCTCTCAGCTTCTTTCATCAAGCCTGGAGCTTGTTTCTCCACAATCTCAGCTTTTTGGTAGTATGCTTCACGTCCTCGGGTACGAAGGTACTCTTGCAAATCCTCATAGCTTGACGATTTGCCCTCCAACAATTCTGGTGTCAAATCATCTAATAGATAGCAATACTGTTGAAGTTTAGCTATCAGTTTGCTAAGATCCCAATCTTCTCTCGGGGTATCAGGGCCAATGTTTGCCTCTAAAATGTCATCCATTGTTAATTCAGCATATTCCACAATAAGTGATTCAAGACTATCAGACGCAAGAGCGCGTCTTCTTTCTGCATATACTCGATCTCTTTGGCTATTCAATACCTCATCATACTCAAATAATTGCTTCCTGATATCGAAGAAATAGTTCTCAACTTTCCGTTGAGCTTCATCTAGAGCCCTTGTCAGCATCTTTGACTCAATAGGAAGATCTTCGACTCTGAAGGCTTGCATCAAACCCTGTATCCTGTCACCTCCAAAAATTC] [+] EMBL CB620696 [ TCTTTTTTTTGAGGTAAAAGAAATATTTAGTTGGCAAAGTTATCTTTTTACAATTGTAAGACTGGTGTCGCCTACTATGAACAATATGCCAGGGCATGGGCGTAGCTGATTGGTCGACATGTCAAAGAAACATTTACATTAAGAAACTGTATTCCAGCATCAAGGCACTGAATTATCTCATTACTTGTACTGCTCTCTACTCTGACAAACATCCCTATAGGCTTAATTATAGGGCTGGGGACGACGACCACCAACATGGAGATATATAACGACAAAATTTTAGTGACCACACTCAAGATGCAGCTTGGGCAGCACCAAGTTTGTTAGCACCCTTGTCGACTTTCTTCTTTGTCCCCTTCTTTTCAGATTTCTCCTCTTCTTGGTTCTTCATCACTGGCTTGAACTGATAAACAGAGTAAATTACATTCCGTCGAATTTGAGCCATCATATCCAAGAAAAGATTATATCCCTCCAGTTTATATTCAATAAGAGGATCTCGTTGGGCGTAACCCCTCAAACCAACAGCCTGTTGCACAAACTTCAATGCCTGCAAGTGTTCCTTCCAGAGCCTATCAATGTTGCTTAGAATAAGGAACCTCTCAGCTTCTTTCATCAAGCCTGGAGCTTGTTTCTCCACAATCTCAGCTTTTTGGTAGTATGCTTCACGTCCTCGGGTACGAAGGTACTCTTGCAAATCCTCATAGCTTGACGATTTGCCCTCCAACAATTCTGGTGTCAAATCATCTAATAGATAGCAATACTGTTGAAGTTTAGCTATCAGTTTGCTAAGATCCCAATCTTCTCTCGGGGTATCAGGGCCAATGTTTGCCTCTANAATGTCATCCATTGTTAATT ] [+] EMBL CB672979 [ TCTTTTTTTTGAGGTAAAAGAAATATTTAGTTGGCAAAGTTCTCTTTTTACAATTGTAAGACTGGTGTCGCCTACTATGAACAATATGCCAGGGCATGGGCGTAGCTGATTGGTCGACATGTCAAAGAAACATTTACATTAAGAAACTGTATTCCAGCATCAAGGCACTGAATTATCTCATTACTTGTACTGCTCTCTACTCTGACAAACATCCCTATAGGCTTAATTATAGGGCTGGGGACGACGACCACCAACATGGAGATATATAACGACAAAATTTTAGTGACCACACTCAAGATGCAGCTTGGGCAGCACCAAGTTTGTTAGCACCCTTGTCGACTTTCTTCTTTGTCCCCTTCTTTTCAGATTTCTCCTCTTCTTGGTTCTTCATCACTGGCTTGAACTGATAAACAGAGTAAATTACATTCCGTCGAATTTGAGCCATCATATCCAAGAAAAGATTATATCCCTCCAGTTTATATTCAATAAGAGGATCTCGTTGGGCGTAACCCCTCAAACCAACAGCCTGTTGCACAAACTTCAATGCCTGCAAGTGTTCCTTCCAGAGCCTATCAATGTTGCTTAGAATAAGGAACCTCTCAGCTTCTTTCATCAAGCCTGGAGCTTGTTTCTCCACAATCTCAGCTTTTTGGTAGTATGCTTCACGTCCTCGGGTACGAAGGTACTCTTGCAAATCCTCATAGCTTGACGATTTGCCCTCCAACAATTCTGGTGTCAAATCATCTAATAGATAGCAATACTGTTGAAGTTTAGCTATCAGTTTGCTAAGATCCC ] [+] EMBL CB672409 [ccttttaaggTTTGAGGGAAAAGAAATATTTAGTTGGCAACCTTATCTTTTTACAATTGTAAGACTGGTGTCGCCTACTATGAACAATATGCCAGGGCATGGGCGTAGCTGATTGGTCGACATGTCAAAGAAACATTTACATTAAGAAACTGTATTCCAGCATCAAGGCACTGAATTATCTCATTACTTGTACTGCTCTCTACTCTGACAAACATCCCTATAGGCTTAATTATAGGGCTGGGGACGACGACCACCAACATGGAGATATATAACGACAAAATTTTAGTGACCACACTCAAGATGCAGCTTGGGCAGCACCAAGTTTGTTAGCACCCTTGTCGACTTTCTTCTTTGTCCCCTTCTTTTCAGATTTCTCCTCTTCTTGGTTCTTCATCACTGGCTTGAACTGATAAACAGAGTAAATTACATTCCGTCGAATTTGAGCCATCATATCCAAGAAAAGATTATATCCCTCCAGTTTATATTCAATAAGAGGATCTCGTTGGGCGTAACCCCTCAAACCAACAGCCTGTTGCACAAACTTCAATGCCTGCAAGTGTTCCTTCCAGAGCCTATCAATGTTGCTTAGAATAAGGAACCTCTCAGCTTCTTTCATCAAGCCTGGAGCTTGTTTCTCCACAATCTCAGCTTTTTGGTAGTATGCTTCACGTCCTCGGGTACGAAGGTACTCTTGCAAATCCTCATAGCTTGACGATTTGCCCTCCAACAATTCTGGTGTCAAATCATCTAATAGATAGCAATACTGTTGAAGTTTAGCTATCAGTTTGCTAAGATCCC ] [-] EMBL BE228388 [ ACCACCAACATGGAGATATATAACGACAAAATTTTAG GACCACACTCAAGATGCAGCTTGGGCAGCACCAAGTTTGTTAGCACCCTTGTCGACTTTTTTCTTTGTCCCCTTCTTTTCAGATTTCTCCTNTTCTGGGTTCTTCATCACTGGCTTGAACTGATAAACAGAGTAAATTACATTCCGTCGAATTTGAGCCATCATATCCAAGAAAAGATTATATCCCTCCAGTTTATATTCAATAAGAGGATCTCGTTGGGCGTAACCCCTCAAACCAACAGCNTGTTGCACAAACTTCAATGCCTGCAAGTGTTCCTTCCAGAGCCTATCAATGTTGCTTAGAATAAGGAACCTCTCAGCTTCTTTCATCAAGCCTGGAGCTTGTTTCTCCACAATCTCAGCTTTTTGGTAGTATGCTTCACGTCCTCGGGTACGAAGGTACTCTTGCAAATCCTCATAGCTTGACGATTTGCCCTCCAACAATct ] [-] EMBL CB000636 [ CATTCCGTCGAATTTGAGCCATCATATCCAAGAAAAGATTATATCCCTCCAGTTTATATTCAATAAGAGGATCTCGTTGGGCGTAGCCCCTCAAACCAACAGCCTGTTGCACAACCTTCAATGCCTGCAAGTGTTCCTTCCAGAGCCTATCAATGTTGCTTAGAATAAGGAACCTCTCAGCTTCTTTCATCAAGCCTGGAGCTTGTTTCTCCACAATCTCAGCTTTTTGGTAGTATGCTTCACGTCCTCGGGTACGAAGGTACTCTTGCAAATCCTCATAGCTTGACGATTTGCCCTCCAACAATTCTGGTGTCAAATCATCTAATAGATAGCAATACTGTTGAAGTTTAGCTATCAGTTTGCTAAGATCCCAATCTTCTCTCGGGGTATCAGGGCCAATGTTTGCCTCTAAAATGTCATCAATTGTTAATTCAGCATATTCCACAATAAGTGATTCAAGACTATCAGACGCAAGAGCGCGTCTTCTTTCTGCATATACTCGATCTCTTTGGCTATTCAATACCTCATCATACTCAAATAATTGCTTCCTGATATCGAAGAAATAGTTCTCAACTTTCCGTTGAGCTTCATCTAGAGCCCTTGTCA ] [-] EMBL CF197183 [ AACAGCNTGNNGCACAAACTTCAATGNNNGCAAGTGNNNNNNNCAGAGCCTATCAATGTTGCTTAGAATAAGGAANNNNNCAGCTTCTTTCATCANGNNNGGAGCTNNNNNNNCCACAATCTCAGCTTTTTGGTAGTATGCTTCACGTCCTCGGGTACGAAGGTACTCTTGCAAATCCTCATAGCTTGACGATTTGCCCTCCAACAATTCTGGTGTCAAATCATCTAATAGATAGCAATACTGTTGAAGTTTAGCTATCAGTTTGCTAAGATCCCAATCTTCTCTCGGGGTATCAGGGCCAATGTTTGCCTCTAAAATGTCATCCATTGTTAATTCAGCATATTCCACAATAAGTGATTCAAGACTATCAGACGCAAGAGCGCGTCTTCTTTCTGCATATACTCGATCTCTTTGGCTATTCAATACCTCATCATACTCAAATAATTGCTTCCTGATATCGAAGAAATAGTTCTCAACTTTCCGTTGAGCTTCATCTAGAGCCCTTGTCAGCATCTTTGACTCAATAGGAAGATCTTCGACTCTGAAGGCTTGCATCAAACCCTGTATCCTGTCACCTCCAAAAATTC] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||