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Oryza sativa
cluster # 969 cluster # 969       Sequences # 2       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_969#0 length = 1193 sequences # 1  
consensus_969#1 length = 925 sequences # 1  

consensusID : consensus_969#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1193
fasta sequence
                              [TACCAGAGCTAAACTGTCTTGCACATCCTTTCACCCTGAGTGACGCAGTAATTTGGAGTGTAAAGTTTACTACTAGTACGCGTACTCCTCAAGAACACCTTGTTGGCCGGCGGCGACTACGCATGGCGGCGGACGGCGGCGCGCTGAAGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGGAACCACACCCACCGCAAGAAGCTCGTCGACCCGGCGTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGCCCGTCGTCGACTCCCTCGCTCGCGCCGCCGCCCGCCCCTCGCCGTCGCCGCCGCCTCCGCCCCCGCCACGCCGCACGGTGTCATGGCTCGACATCACCGACGCCGCCACCGCCGACAACGACAACGACAAGAGCAAGGATGACTCCTCGCTCGACGCCCTCCTCAAGCCGCCCAGGCCGGCGAGCGGCGGCGCCACCGTGAAGCGGAGCGCGAGCTTCTGCCTCAAGAGCTCGACGTCGCTGCTGCTCTGCACCGAGGGGCTCGGGTCGGAGAGCACCGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCAGCGGCGCCGTCGTCGACAGCGGGATGGACGTGGACGACGACGCCAGCGACGTCGCCGCCGCCGTGGCGGGCGACGACGCCTTCGGCGCCGGAGGGAAGGAGAATCGGCCGCCGCCGCCGCCGCCGTCGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGAGTGTGTGCTTCCGGTCGGTGCGCGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTCATCCCCGGGAAGGATCTCCTGCGGGCGACTCGCGAGGGCGGCCGCCTCAGGCTGCAGTTCTCCAACGCCGCCGCCGCCGCCGCCGCCGCCGTCGGCGTCATCGACGACGAGGAGATGCATGGACAAGAAGCAGCAGCATGCGTAGGCGGCGACACGTTCGCTTAATTAACTCCTATTATAATCTATTATTCTTGTGCTAACTAATTTGGTCAAGAAGCACTAATTAAACATACTTGTGATGCATATATATGATTTCATATACATACAATACTTTGTCAGGTCATAGGAACATGTCGCTCTGTACAATAAGAATGTACGATCTGACCTGAATATCAAAGCAGTGAAAGATCTAGAAAAAGT]

[+] EMBL AK108190             [TACCAGAGCTAAACTGTCTTGCACATCCTTTCACCCTGAGTGACGCAGTAATTTGGAGTGTAAAGTTTACTACTAGTACGCGTACTCCTCAAGAACACCTTGTTGGCCGGCGGCGACTACGCATGGCGGCGGACGGCGGCGCGCTGAAGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGGAACCACACCCACCGCAAGAAGCTCGTCGACCCGGCGTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGCCCGTCGTCGACTCCCTCGCTCGCGCCGCCGCCCGCCCCTCGCCGTCGCCGCCGCCTCCGCCCCCGCCACGCCGCACGGTGTCATGGCTCGACATCACCGACGCCGCCACCGCCGACAACGACAACGACAAGAGCAAGGATGACTCCTCGCTCGACGCCCTCCTCAAGCCGCCCAGGCCGGCGAGCGGCGGCGCCACCGTGAAGCGGAGCGCGAGCTTCTGCCTCAAGAGCTCGACGTCGCTGCTGCTCTGCACCGAGGGGCTCGGGTCGGAGAGCACCGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCAGCGGCGCCGTCGTCGACAGCGGGATGGACGTGGACGACGACGCCAGCGACGTCGCCGCCGCCGTGGCGGGCGACGACGCCTTCGGCGCCGGAGGGAAGGAGAATCGGCCGCCGCCGCCGCCGCCGTCGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGAGTGTGTGCTTCCGGTCGGTGCGCGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTCATCCCCGGGAAGGATCTCCTGCGGGCGACTCGCGAGGGCGGCCGCCTCAGGCTGCAGTTCTCCAACGCCGCCGCCGCCGCCGCCGCCGCCGTCGGCGTCATCGACGACGAGGAGATGCATGGACAAGAAGCAGCAGCATGCGTAGGCGGCGACACGTTCGCTTAATTAACTCCTATTATAATCTATTATTCTTGTGCTAACTAATTTGGTCAAGAAGCACTAATTAAACATACTTGTGATGCATATATATGATTTCATATACATACAATACTTTGTCAGGTCATAGGAACATGTCGCTCTGTACAATAAGAATGTACGATCTGACCTGAATATCAAAGCAGTGAAAGATCTAGAAAAAGT]


>consensus_969#0 TACCAGAGCTAAACTGTCTTGCACATCCTTTCACCCTGAGTGACGCAGTAATTTGGAGTG TAAAGTTTACTACTAGTACGCGTACTCCTCAAGAACACCTTGTTGGCCGGCGGCGACTAC GCATGGCGGCGGACGGCGGCGCGCTGAAGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACC CGACGCTGCTGGAGGCGCTGTCGGCGTGGAACCACACCCACCGCAAGAAGCTCGTCGACC CGGCGTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGCCCGTCGTCG ACTCCCTCGCTCGCGCCGCCGCCCGCCCCTCGCCGTCGCCGCCGCCTCCGCCCCCGCCAC GCCGCACGGTGTCATGGCTCGACATCACCGACGCCGCCACCGCCGACAACGACAACGACA AGAGCAAGGATGACTCCTCGCTCGACGCCCTCCTCAAGCCGCCCAGGCCGGCGAGCGGCG GCGCCACCGTGAAGCGGAGCGCGAGCTTCTGCCTCAAGAGCTCGACGTCGCTGCTGCTCT GCACCGAGGGGCTCGGGTCGGAGAGCACCGTGGACGCCGACGACATGGTCAAGGACGGCG ACGGCAGCGGCGCCGTCGTCGACAGCGGGATGGACGTGGACGACGACGCCAGCGACGTCG CCGCCGCCGTGGCGGGCGACGACGCCTTCGGCGCCGGAGGGAAGGAGAATCGGCCGCCGC CGCCGCCGCCGTCGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGAGTG TGTGCTTCCGGTCGGTGCGCGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTCATCCCCG GGAAGGATCTCCTGCGGGCGACTCGCGAGGGCGGCCGCCTCAGGCTGCAGTTCTCCAACG CCGCCGCCGCCGCCGCCGCCGCCGTCGGCGTCATCGACGACGAGGAGATGCATGGACAAG AAGCAGCAGCATGCGTAGGCGGCGACACGTTCGCTTAATTAACTCCTATTATAATCTATT ATTCTTGTGCTAACTAATTTGGTCAAGAAGCACTAATTAAACATACTTGTGATGCATATA TATGATTTCATATACATACAATACTTTGTCAGGTCATAGGAACATGTCGCTCTGTACAAT AAGAATGTACGATCTGACCTGAATATCAAAGCAGTGAAAGATCTAGAAAAAGT



consensusID : consensus_969#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 925
fasta sequence
                              [TTGCCGGTGCAAAGCTTTGGTTCTTGGCCGGTGGCGGCGGCGCGCATGGCGGCGGACGGCGGCGCGCTGAGGCGGCTGTTCGAGAAGCCGCTGCCGGTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGCAACCATGTGCACCACCGCAAGAAGCTCGTCGACACGGCCTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGGTGGACGTCGCCGCCGCCGCCCGGTTCCTGCCGCCGCCGCCGCCGCCTGTTCGCGCGGCGTCGTGGATCGACGTCGCCGACGACAAGAGCAAGGACGGCTCGTCCCTGGACGCGCTGCTCCGGCCGAAGTCGTCCGCCGTCAAGAGGAGCGCCAGCTTCTGCCTCAAGAGCTCCGAGTCGTCGCTGCTGCTCTGCACCGAGGGGCTCGGGACGGAGAGCACGGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCGACGGCGAGGCCATCCGCCGTGGCGAGGAGGAGACGGACGGCGTGGAGGAGGACGACGGCGCGGGGAGGGAGAAGCGGGGCACGCCGACGCTGGCACCGACGCCGCCGACGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGTCGTTCCGGGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTGATCCCCGGGAAGGAGCTCCTGCAGGCGACGCGCGAGGGCGGTCGCCTCACGCTGCGCTTCGCCAACGCCGCGGCCGTGGGCGGCGGCGGCGAAGCAGACGACGATGTCAACGACGACGACGTCGATGGCGGCGAGACCAAGAATGCATGCGCAGCAAGAGATGATATGCTAGCTAATAACTGCACTTGTTAATTAAGAATTTAAGATGGCTGCAAGTTGCAACGAAGAACTTGAT]

[+] EMBL AK060647             [TTGCCGGTGCAAAGCTTTGGTTCTTGGCCGGTGGCGGCGGCGCGCATGGCGGCGGACGGCGGCGCGCTGAGGCGGCTGTTCGAGAAGCCGCTGCCGGTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGCAACCATGTGCACCACCGCAAGAAGCTCGTCGACACGGCCTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGGTGGACGTCGCCGCCGCCGCCCGGTTCCTGCCGCCGCCGCCGCCGCCTGTTCGCGCGGCGTCGTGGATCGACGTCGCCGACGACAAGAGCAAGGACGGCTCGTCCCTGGACGCGCTGCTCCGGCCGAAGTCGTCCGCCGTCAAGAGGAGCGCCAGCTTCTGCCTCAAGAGCTCCGAGTCGTCGCTGCTGCTCTGCACCGAGGGGCTCGGGACGGAGAGCACGGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCGACGGCGAGGCCATCCGCCGTGGCGAGGAGGAGACGGACGGCGTGGAGGAGGACGACGGCGCGGGGAGGGAGAAGCGGGGCACGCCGACGCTGGCACCGACGCCGCCGACGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGTCGTTCCGGGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTGATCCCCGGGAAGGAGCTCCTGCAGGCGACGCGCGAGGGCGGTCGCCTCACGCTGCGCTTCGCCAACGCCGCGGCCGTGGGCGGCGGCGGCGAAGCAGACGACGATGTCAACGACGACGACGTCGATGGCGGCGAGACCAAGAATGCATGCGCAGCAAGAGATGATATGCTAGCTAATAACTGCACTTGTTAATTAAGAATTTAAGATGGCTGCAAGTTGCAACGAAGAACTTGAT]


>consensus_969#1 TTGCCGGTGCAAAGCTTTGGTTCTTGGCCGGTGGCGGCGGCGCGCATGGCGGCGGACGGC GGCGCGCTGAGGCGGCTGTTCGAGAAGCCGCTGCCGGTGCCGGAGAACCCGACGCTGCTG GAGGCGCTGTCGGCGTGCAACCATGTGCACCACCGCAAGAAGCTCGTCGACACGGCCTCC TTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGGTGGACGTCGCCGCCGCC GCCCGGTTCCTGCCGCCGCCGCCGCCGCCTGTTCGCGCGGCGTCGTGGATCGACGTCGCC GACGACAAGAGCAAGGACGGCTCGTCCCTGGACGCGCTGCTCCGGCCGAAGTCGTCCGCC GTCAAGAGGAGCGCCAGCTTCTGCCTCAAGAGCTCCGAGTCGTCGCTGCTGCTCTGCACC GAGGGGCTCGGGACGGAGAGCACGGTGGACGCCGACGACATGGTCAAGGACGGCGACGGC GACGGCGAGGCCATCCGCCGTGGCGAGGAGGAGACGGACGGCGTGGAGGAGGACGACGGC GCGGGGAGGGAGAAGCGGGGCACGCCGACGCTGGCACCGACGCCGCCGACGTTCCCGCCG CCGATACGGTCGATCGGGCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGTCGTTCCGGGCG GAGGGGAGGTTCGTGCTGATGGAGGTGGTGATCCCCGGGAAGGAGCTCCTGCAGGCGACG CGCGAGGGCGGTCGCCTCACGCTGCGCTTCGCCAACGCCGCGGCCGTGGGCGGCGGCGGC GAAGCAGACGACGATGTCAACGACGACGACGTCGATGGCGGCGAGACCAAGAATGCATGC GCAGCAAGAGATGATATGCTAGCTAATAACTGCACTTGTTAATTAAGAATTTAAGATGGC TGCAAGTTGCAACGAAGAACTTGAT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_969#0      TACCAGAGCTAAACTGTCTTGCACATCCTTTCACCCTGAGTGACGCAGTAATTTGGAGTG 60
consensus_969#1      ------------------------------------------------------------
                                                                                 

consensus_969#0      TAAAGTTTACTACTAGTACGCGTACTCCTCAAGAACACCTTGTTGGCCGGCGGCGAC--T 118
consensus_969#1      -------------TTGCCGGTGCAAAGCTTTGG------TTCTTGGCCGGTGGCGGCGGC 41
                                  * *   * * *   **   *      ** ******** **** *   

consensus_969#0      ACGCATGGCGGCGGACGGCGGCGCGCTGAAGCGGCTGTTCGAGAAGCCGTTGCCGG---- 174
consensus_969#1      GCGCATGGCGGCGGACGGCGGCGCGCTGAGGCGGCTGTTCGAGAAGCCGCTGCCGGTGCC 101
                      **************************** ******************* ******    

consensus_969#0      --AGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGGAACCACAC---CCACCGCAAGAA 229
consensus_969#1      GGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGCAACCATGTGCACCACCGCAAGAA 161
                       ********************************** *****      ************

consensus_969#0      GCTCGTCGACCCGGCGTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCC 289
consensus_969#1      GCTCGTCGACACGGCCTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCC 221
                     ********** **** ********************************************

consensus_969#0      GCCCGTCGTCGACTCCCTCGCTCGCGCCGCCGCCCGCCCCTCGCCGTCGCCGCCGCCTCC 349
consensus_969#1      GGTGGACGTCGCC------------GCCGCCGCCCGGTTCCTGCCGCCGCCGCCG----- 264
                     *   * ***** *            ***********   *  **** ********     

consensus_969#0      GCCCCCGCCACGCCGCACGGTGTCATGGCTCGACATCACCGACGCCGCCACCGCCGACAA 409
consensus_969#1      ----CCGCCTGTTCGCGCGGCGTCGTGGATCGACGTCGCCGACG---------------- 304
                         *****    *** *** *** *** ***** ** ******                

consensus_969#0      CGACAACGACAAGAGCAAGGATGACTCCTCGCTCGACGCCCTCCTCAAGCCGCCCAGGCC 469
consensus_969#1      --------ACAAGAGCAAGGACGGCTCGTCCCTGGACGCGCTGCTCCGGCCG---AAGTC 353
                             ************* * *** ** ** ***** ** ***  ****   * * *

consensus_969#0      GGCGAGCGGCGGCGCCACCGTGAAGCGGAGCGCGAGCTTCTGCCTCAAGAGCTC---GAC 526
consensus_969#1      GTC------------CGCCGTCAAGAGGAGCGCCAGCTTCTGCCTCAAGAGCTCCGAGTC 401
                     * *            * **** *** ******* ********************   * *

consensus_969#0      GTCGCTGCTGCTCTGCACCGAGGGGCTCGGGTCGGAGAGCACCGTGGACGCCGACGACAT 586
consensus_969#1      GTCGCTGCTGCTCTGCACCGAGGGGCTCGGGACGGAGAGCACGGTGGACGCCGACGACAT 461
                     ******************************* ********** *****************

consensus_969#0      GGTCAAGGACGGCGACGGCAGCGGCGCCGTCGTCGACAGCGGGATGGACGTGGACGACGA 646
consensus_969#1      GGTCAAGGACGGCGACGGCGACGGCGAGGCCATCCGCCGTGGCGAGGAGGAGACGGACGG 521
                     *******************  *****  * * **  * * **   *** * *   **** 

consensus_969#0      CGCCAGCGACGTCGCCGCCGCCGTGGCGGGCGACGACGCCTTCGGCGCCGGAGGGAAGGA 706
consensus_969#1      CGTGGAGGAGGACGACGGCGC-GGGGAGGGAGAAGCGGGGCACGCCGACG---------- 570
                     **     ** * ** ** *** * ** *** ** *  *    ** ** **          

consensus_969#0      GAATCGGCCGCCGCCGCCGCCGCCGTCGTTCCCGCCGCCGATACGGTCGATCGGGCGCGG 766
consensus_969#1      -------CTGGCACCGACGCCGCCGACGTTCCCGCCGCCGATACGGTCGATCGGGCGCGG 623
                            * * * *** ******** **********************************

consensus_969#0      CGGGAAGCCGAGTGTGTGCTTCCGGTCGGTGCGCGCGGAGGGGAGGTTCGTGCTGATGGA 826
consensus_969#1      CGGGAAGCCGTGCGTGTGCTTCCGGTCGTTCCGGGCGGAGGGGAGGTTCGTGCTGATGGA 683
                     ********** * *************** * ** **************************

consensus_969#0      GGTGGTCATCCCCGGGAAGGATCTCCTGCGGGCGACTCGCGAGGGCGGCCGCCTCAGGCT 886
consensus_969#1      GGTGGTGATCCCCGGGAAGGAGCTCCTGCAGGCGACGCGCGAGGGCGGTCGCCTCACGCT 743
                     ****** ************** ******* ****** *********** ******* ***

consensus_969#0      GCAGTTCTCCAACGCCGCCGCCGCCGCCGCCGCCGCCGT------CGGCGTCATCGACGA 940
consensus_969#1      GCGCTTCGCCAACGCCGCGGCCGTGGGCGGCGGCGGCGAAGCAGACGACGATGTCAACGA 803
                     **  *** ********** ****  * ** ** ** **       ** **   ** ****

consensus_969#0      CGAGGAGATGCATGG--ACAAGAAGCAGCA-GCATGCGTAG---GCGGCGACACGTTCGC 994
consensus_969#1      CGACGACGTCGATGGCGGCGAGACCAAGAATGCATGCGCAGCAAGAGATGATATGCTAGC 863
                     *** **  *  ****   * ***   ** * ******* **   * *  ** * * * **

consensus_969#0      TTAATTAACTCCTATTATAATCTATTATTCTTGTGCTAACTA-ATTTGGTCAAGAAGCAC 1053
consensus_969#1      TAA--TAACTGCACTTGTTAATTAAGAAT-TTAAGATGGCTGCAAGTTGCAACGAAGAAC 920
                     * *  ***** *  ** * *  **  * * **  * *  **  *  * *  * **** **

consensus_969#0      TAATTAAACATACTTGTGATGCATATATATGATTTCATATACATACAATACTTTGTCAGG 1113
consensus_969#1      TTGAT------------------------------------------------------- 925
                     *   *                                                       

consensus_969#0      TCATAGGAACATGTCGCTCTGTACAATAAGAATGTACGATCTGACCTGAATATCAAAGCA 1173
consensus_969#1      ------------------------------------------------------------
                                                                                 

consensus_969#0      GTGAAAGATCTAGAAAAAGT 1193
consensus_969#1      --------------------
                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)