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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_969#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1193 fasta sequence
[TACCAGAGCTAAACTGTCTTGCACATCCTTTCACCCTGAGTGACGCAGTAATTTGGAGTGTAAAGTTTACTACTAGTACGCGTACTCCTCAAGAACACCTTGTTGGCCGGCGGCGACTACGCATGGCGGCGGACGGCGGCGCGCTGAAGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGGAACCACACCCACCGCAAGAAGCTCGTCGACCCGGCGTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGCCCGTCGTCGACTCCCTCGCTCGCGCCGCCGCCCGCCCCTCGCCGTCGCCGCCGCCTCCGCCCCCGCCACGCCGCACGGTGTCATGGCTCGACATCACCGACGCCGCCACCGCCGACAACGACAACGACAAGAGCAAGGATGACTCCTCGCTCGACGCCCTCCTCAAGCCGCCCAGGCCGGCGAGCGGCGGCGCCACCGTGAAGCGGAGCGCGAGCTTCTGCCTCAAGAGCTCGACGTCGCTGCTGCTCTGCACCGAGGGGCTCGGGTCGGAGAGCACCGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCAGCGGCGCCGTCGTCGACAGCGGGATGGACGTGGACGACGACGCCAGCGACGTCGCCGCCGCCGTGGCGGGCGACGACGCCTTCGGCGCCGGAGGGAAGGAGAATCGGCCGCCGCCGCCGCCGCCGTCGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGAGTGTGTGCTTCCGGTCGGTGCGCGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTCATCCCCGGGAAGGATCTCCTGCGGGCGACTCGCGAGGGCGGCCGCCTCAGGCTGCAGTTCTCCAACGCCGCCGCCGCCGCCGCCGCCGCCGTCGGCGTCATCGACGACGAGGAGATGCATGGACAAGAAGCAGCAGCATGCGTAGGCGGCGACACGTTCGCTTAATTAACTCCTATTATAATCTATTATTCTTGTGCTAACTAATTTGGTCAAGAAGCACTAATTAAACATACTTGTGATGCATATATATGATTTCATATACATACAATACTTTGTCAGGTCATAGGAACATGTCGCTCTGTACAATAAGAATGTACGATCTGACCTGAATATCAAAGCAGTGAAAGATCTAGAAAAAGT]
[+] EMBL AK108190 [TACCAGAGCTAAACTGTCTTGCACATCCTTTCACCCTGAGTGACGCAGTAATTTGGAGTGTAAAGTTTACTACTAGTACGCGTACTCCTCAAGAACACCTTGTTGGCCGGCGGCGACTACGCATGGCGGCGGACGGCGGCGCGCTGAAGCGGCTGTTCGAGAAGCCGTTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGGAACCACACCCACCGCAAGAAGCTCGTCGACCCGGCGTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGCCCGTCGTCGACTCCCTCGCTCGCGCCGCCGCCCGCCCCTCGCCGTCGCCGCCGCCTCCGCCCCCGCCACGCCGCACGGTGTCATGGCTCGACATCACCGACGCCGCCACCGCCGACAACGACAACGACAAGAGCAAGGATGACTCCTCGCTCGACGCCCTCCTCAAGCCGCCCAGGCCGGCGAGCGGCGGCGCCACCGTGAAGCGGAGCGCGAGCTTCTGCCTCAAGAGCTCGACGTCGCTGCTGCTCTGCACCGAGGGGCTCGGGTCGGAGAGCACCGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCAGCGGCGCCGTCGTCGACAGCGGGATGGACGTGGACGACGACGCCAGCGACGTCGCCGCCGCCGTGGCGGGCGACGACGCCTTCGGCGCCGGAGGGAAGGAGAATCGGCCGCCGCCGCCGCCGCCGTCGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGAGTGTGTGCTTCCGGTCGGTGCGCGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTCATCCCCGGGAAGGATCTCCTGCGGGCGACTCGCGAGGGCGGCCGCCTCAGGCTGCAGTTCTCCAACGCCGCCGCCGCCGCCGCCGCCGCCGTCGGCGTCATCGACGACGAGGAGATGCATGGACAAGAAGCAGCAGCATGCGTAGGCGGCGACACGTTCGCTTAATTAACTCCTATTATAATCTATTATTCTTGTGCTAACTAATTTGGTCAAGAAGCACTAATTAAACATACTTGTGATGCATATATATGATTTCATATACATACAATACTTTGTCAGGTCATAGGAACATGTCGCTCTGTACAATAAGAATGTACGATCTGACCTGAATATCAAAGCAGTGAAAGATCTAGAAAAAGT]
consensusID : consensus_969#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 925 fasta sequence
[TTGCCGGTGCAAAGCTTTGGTTCTTGGCCGGTGGCGGCGGCGCGCATGGCGGCGGACGGCGGCGCGCTGAGGCGGCTGTTCGAGAAGCCGCTGCCGGTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGCAACCATGTGCACCACCGCAAGAAGCTCGTCGACACGGCCTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGGTGGACGTCGCCGCCGCCGCCCGGTTCCTGCCGCCGCCGCCGCCGCCTGTTCGCGCGGCGTCGTGGATCGACGTCGCCGACGACAAGAGCAAGGACGGCTCGTCCCTGGACGCGCTGCTCCGGCCGAAGTCGTCCGCCGTCAAGAGGAGCGCCAGCTTCTGCCTCAAGAGCTCCGAGTCGTCGCTGCTGCTCTGCACCGAGGGGCTCGGGACGGAGAGCACGGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCGACGGCGAGGCCATCCGCCGTGGCGAGGAGGAGACGGACGGCGTGGAGGAGGACGACGGCGCGGGGAGGGAGAAGCGGGGCACGCCGACGCTGGCACCGACGCCGCCGACGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGTCGTTCCGGGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTGATCCCCGGGAAGGAGCTCCTGCAGGCGACGCGCGAGGGCGGTCGCCTCACGCTGCGCTTCGCCAACGCCGCGGCCGTGGGCGGCGGCGGCGAAGCAGACGACGATGTCAACGACGACGACGTCGATGGCGGCGAGACCAAGAATGCATGCGCAGCAAGAGATGATATGCTAGCTAATAACTGCACTTGTTAATTAAGAATTTAAGATGGCTGCAAGTTGCAACGAAGAACTTGAT]
[+] EMBL AK060647 [TTGCCGGTGCAAAGCTTTGGTTCTTGGCCGGTGGCGGCGGCGCGCATGGCGGCGGACGGCGGCGCGCTGAGGCGGCTGTTCGAGAAGCCGCTGCCGGTGCCGGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGCAACCATGTGCACCACCGCAAGAAGCTCGTCGACACGGCCTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCCGGTGGACGTCGCCGCCGCCGCCCGGTTCCTGCCGCCGCCGCCGCCGCCTGTTCGCGCGGCGTCGTGGATCGACGTCGCCGACGACAAGAGCAAGGACGGCTCGTCCCTGGACGCGCTGCTCCGGCCGAAGTCGTCCGCCGTCAAGAGGAGCGCCAGCTTCTGCCTCAAGAGCTCCGAGTCGTCGCTGCTGCTCTGCACCGAGGGGCTCGGGACGGAGAGCACGGTGGACGCCGACGACATGGTCAAGGACGGCGACGGCGACGGCGAGGCCATCCGCCGTGGCGAGGAGGAGACGGACGGCGTGGAGGAGGACGACGGCGCGGGGAGGGAGAAGCGGGGCACGCCGACGCTGGCACCGACGCCGCCGACGTTCCCGCCGCCGATACGGTCGATCGGGCGCGGCGGGAAGCCGTGCGTGTGCTTCCGGTCGTTCCGGGCGGAGGGGAGGTTCGTGCTGATGGAGGTGGTGATCCCCGGGAAGGAGCTCCTGCAGGCGACGCGCGAGGGCGGTCGCCTCACGCTGCGCTTCGCCAACGCCGCGGCCGTGGGCGGCGGCGGCGAAGCAGACGACGATGTCAACGACGACGACGTCGATGGCGGCGAGACCAAGAATGCATGCGCAGCAAGAGATGATATGCTAGCTAATAACTGCACTTGTTAATTAAGAATTTAAGATGGCTGCAAGTTGCAACGAAGAACTTGAT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_969#0 TACCAGAGCTAAACTGTCTTGCACATCCTTTCACCCTGAGTGACGCAGTAATTTGGAGTG 60
consensus_969#1 ------------------------------------------------------------
consensus_969#0 TAAAGTTTACTACTAGTACGCGTACTCCTCAAGAACACCTTGTTGGCCGGCGGCGAC--T 118
consensus_969#1 -------------TTGCCGGTGCAAAGCTTTGG------TTCTTGGCCGGTGGCGGCGGC 41
* * * * * ** * ** ******** **** *
consensus_969#0 ACGCATGGCGGCGGACGGCGGCGCGCTGAAGCGGCTGTTCGAGAAGCCGTTGCCGG---- 174
consensus_969#1 GCGCATGGCGGCGGACGGCGGCGCGCTGAGGCGGCTGTTCGAGAAGCCGCTGCCGGTGCC 101
**************************** ******************* ******
consensus_969#0 --AGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGGAACCACAC---CCACCGCAAGAA 229
consensus_969#1 GGAGAACCCGACGCTGCTGGAGGCGCTGTCGGCGTGCAACCATGTGCACCACCGCAAGAA 161
********************************** ***** ************
consensus_969#0 GCTCGTCGACCCGGCGTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCC 289
consensus_969#1 GCTCGTCGACACGGCCTCCTTCACCGAGATCTTCGGCGAGCTCCACTTCCAGGAGAAGCC 221
********** **** ********************************************
consensus_969#0 GCCCGTCGTCGACTCCCTCGCTCGCGCCGCCGCCCGCCCCTCGCCGTCGCCGCCGCCTCC 349
consensus_969#1 GGTGGACGTCGCC------------GCCGCCGCCCGGTTCCTGCCGCCGCCGCCG----- 264
* * ***** * *********** * **** ********
consensus_969#0 GCCCCCGCCACGCCGCACGGTGTCATGGCTCGACATCACCGACGCCGCCACCGCCGACAA 409
consensus_969#1 ----CCGCCTGTTCGCGCGGCGTCGTGGATCGACGTCGCCGACG---------------- 304
***** *** *** *** *** ***** ** ******
consensus_969#0 CGACAACGACAAGAGCAAGGATGACTCCTCGCTCGACGCCCTCCTCAAGCCGCCCAGGCC 469
consensus_969#1 --------ACAAGAGCAAGGACGGCTCGTCCCTGGACGCGCTGCTCCGGCCG---AAGTC 353
************* * *** ** ** ***** ** *** **** * * *
consensus_969#0 GGCGAGCGGCGGCGCCACCGTGAAGCGGAGCGCGAGCTTCTGCCTCAAGAGCTC---GAC 526
consensus_969#1 GTC------------CGCCGTCAAGAGGAGCGCCAGCTTCTGCCTCAAGAGCTCCGAGTC 401
* * * **** *** ******* ******************** * *
consensus_969#0 GTCGCTGCTGCTCTGCACCGAGGGGCTCGGGTCGGAGAGCACCGTGGACGCCGACGACAT 586
consensus_969#1 GTCGCTGCTGCTCTGCACCGAGGGGCTCGGGACGGAGAGCACGGTGGACGCCGACGACAT 461
******************************* ********** *****************
consensus_969#0 GGTCAAGGACGGCGACGGCAGCGGCGCCGTCGTCGACAGCGGGATGGACGTGGACGACGA 646
consensus_969#1 GGTCAAGGACGGCGACGGCGACGGCGAGGCCATCCGCCGTGGCGAGGAGGAGACGGACGG 521
******************* ***** * * ** * * ** *** * * ****
consensus_969#0 CGCCAGCGACGTCGCCGCCGCCGTGGCGGGCGACGACGCCTTCGGCGCCGGAGGGAAGGA 706
consensus_969#1 CGTGGAGGAGGACGACGGCGC-GGGGAGGGAGAAGCGGGGCACGCCGACG---------- 570
** ** * ** ** *** * ** *** ** * * ** ** **
consensus_969#0 GAATCGGCCGCCGCCGCCGCCGCCGTCGTTCCCGCCGCCGATACGGTCGATCGGGCGCGG 766
consensus_969#1 -------CTGGCACCGACGCCGCCGACGTTCCCGCCGCCGATACGGTCGATCGGGCGCGG 623
* * * *** ******** **********************************
consensus_969#0 CGGGAAGCCGAGTGTGTGCTTCCGGTCGGTGCGCGCGGAGGGGAGGTTCGTGCTGATGGA 826
consensus_969#1 CGGGAAGCCGTGCGTGTGCTTCCGGTCGTTCCGGGCGGAGGGGAGGTTCGTGCTGATGGA 683
********** * *************** * ** **************************
consensus_969#0 GGTGGTCATCCCCGGGAAGGATCTCCTGCGGGCGACTCGCGAGGGCGGCCGCCTCAGGCT 886
consensus_969#1 GGTGGTGATCCCCGGGAAGGAGCTCCTGCAGGCGACGCGCGAGGGCGGTCGCCTCACGCT 743
****** ************** ******* ****** *********** ******* ***
consensus_969#0 GCAGTTCTCCAACGCCGCCGCCGCCGCCGCCGCCGCCGT------CGGCGTCATCGACGA 940
consensus_969#1 GCGCTTCGCCAACGCCGCGGCCGTGGGCGGCGGCGGCGAAGCAGACGACGATGTCAACGA 803
** *** ********** **** * ** ** ** ** ** ** ** ****
consensus_969#0 CGAGGAGATGCATGG--ACAAGAAGCAGCA-GCATGCGTAG---GCGGCGACACGTTCGC 994
consensus_969#1 CGACGACGTCGATGGCGGCGAGACCAAGAATGCATGCGCAGCAAGAGATGATATGCTAGC 863
*** ** * **** * *** ** * ******* ** * * ** * * * **
consensus_969#0 TTAATTAACTCCTATTATAATCTATTATTCTTGTGCTAACTA-ATTTGGTCAAGAAGCAC 1053
consensus_969#1 TAA--TAACTGCACTTGTTAATTAAGAAT-TTAAGATGGCTGCAAGTTGCAACGAAGAAC 920
* * ***** * ** * * ** * * ** * * ** * * * * **** **
consensus_969#0 TAATTAAACATACTTGTGATGCATATATATGATTTCATATACATACAATACTTTGTCAGG 1113
consensus_969#1 TTGAT------------------------------------------------------- 925
* *
consensus_969#0 TCATAGGAACATGTCGCTCTGTACAATAAGAATGTACGATCTGACCTGAATATCAAAGCA 1173
consensus_969#1 ------------------------------------------------------------
consensus_969#0 GTGAAAGATCTAGAAAAAGT 1193
consensus_969#1 --------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||