These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9695#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1588 fasta sequence [GCGGCCGGCTCTCGCTCGGGTGGTCCTCCGGTGGCGCGGAGGCAGGCAGGGCCTCCTCGTCGGTCGGCGTGCACCCTGACTACCCTCCCGAGGCGGGGGCGGCGGCGGCGGCGGGGGGCGCCTCCGACCTAGCGCATGGAGCCGTGTGGGCGTCGTCCAGGGAGGCGGAAGCTTCGCCGTCCGGGCGCCAGCCGGAGACGGAGGAGGAGGAGACGGAGACGAAATTTTTGACTGGGTTGGACGGGATGCTTACCATGCTGCAGAGGGAAAGGGAGAGGGTCCGGCCGCCGCTCCCACGGAGCACCGATGGAGCGGGAGGGGAACGCGACAATGTTGCTTTAATGGGTCAGAGTGGAGCACCCAGTCACTCTGCAACTGGTGGCACGTACACTCCAAAGGTACCTGATAATGCAAATATACATAGTTATCATCCTCAAAATGGAGCACTAGAACATAACAAAAGCTCAAAGAGTTTGACTAATGATGCATGGCGAACATGGTCCCTTGACAAGGGTGGTTTTTCAGATTTTCAAGCCGCTGAAATCCATTCAACTAACAGCAGGAAATCATTTAGACATGATGGCCTAGACATTCTTGCACAAGATGACGTGCACGGGCCATCTAATGGTGTGGCTGTACATGATTATGATATTAATGATGTAGACTCTGAAAGAGACGATATACATGCACGCCTTCAAAATTTGGAGTTGGATCTTACTGCCGCTCTTCATACATTAAGATCAAGATTCGACAAGGTTATATCAGATATGTCCGAAGGTGACAGAGCAAAAGCACCAAATGGGCTCTCCGACGATTGGGAATTTGAAGAGACCAAAGTAATGCAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGATGGCACTGGAGATAATTGAGAAG-ACAAAATAATTGAAGAGANACAAAGAAGGCTTGATGAAGCTGAGAAGGCCTTGAGTGAGCTCCGTACTGTTTATATTGTGTGGTCTAATCCTGCTTCAGAGGTTCTATTGACTGGATCTTTTGATGGCTGGACAAGTCAGAGAAGAATGGAAAGATCAGAAAGAGGCACCTTTTCCTTAAACCTGAGGTTGTATCCTGGTAGATATGAGATTAAATTTATTGTTGATGGTGTTTGGAGGAATGATCCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACACCCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGTTGTACCCCTTCATGGAATGTGGTTGTACATCTCTTT] [+] EMBL CB646339 [GCGGCCGGCTCTCGCTCGGGTGGTCCTCCGGTGGCGCGGAGGCAGGCAGGGCCTCCTCGTCGGTCGGCGTGCACCCTGACTACCCTCCCGAGGCGGGGGCGGCGGCGGCGGCGGGGGGCGCCTCCGACCTAGCGCATGGAGCCGTGTGGGCGTCGTCCAGGGAGGCGGAAGCTTCGCCGTCCGGGCGCCAGCCGGAGACGGAGGAGGAGGAGACGGAGACGAAATTTTTGACTGGGTTGGACGGGATGCTTACCATGCTGCAGAGGGAAAGGGAGAGGGTCCGGCCGCCGCTCCCACGGAGCACCGATGGAGCGGGAGGGGAACGCGACAATGTTGCTTTAATGGGTCAGAGTGGAGCACCCAGTCACTCTGCAACTGGTGGCACGTACACTCCAAAGGTACCTGATAATGCAAATATACATAGTTATCATCCTC ] [+] EMBL CB627058 [ GGAGCCGTGTGGGCGTCGTCCAGGGAGGCGGAAGCTTCGCCGTCCGGGCGCCAGCCGGAGACGGAGGAGGAGGAGACGGAGACGAAATTTGGGACTGGGTTGGACGGGATGCTTACCAGGCTGCAGAGGGAAAGGGAGAGGGTCCGGCCGCCGCTCCCACGGAGCAGCGATGGAGCGGGAGGGGAACGCGACAATGTTGCTTTAATGGGTCAGAGTGGAGCACCCAGTCACTCTGCAACTGGTGGCAGGTATACTCCAAAGGTACCTGATAATGGAAATATACATAGTTATCATCCTCAAAATGGAGCACTAGAACATAACAAAAGCTCAAAGAGTTTGACTAATGATGCATGGCGAACATGGTCCCTTGACAAGGGTGGTTTTTCAGATTTTCAAGCCGCTGAAATCCATTCAACTAACAGCAGGAAATCATTTAGACATGATGGCCTAGACATTCTTGCACAAGATGACGTGCACGGGCCATCTAATGGTGTGGCTGTACATGATTATGATATTAATGATGTAGACTCTGAAAGAGACGATATACATGCACGCCTTCAAAATTTGGAGTTGGATCTTACTGCCGCTCTTCATACATTAAGATCAAGATTCGACAAGGTTATATCAGATATGTCCGAAGGTGACAGAGCAAAAGCACCAAATGGGCTCTCCGACGATTGGGAATTTGAAGAGACCAAAGTAATGCAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGATGGCACTGGAGATAATTGAGAAG ACAAAATAATTGAAGAGANACAAAGAAGGCTT ] [-] EMBL CB627059 [ CAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGATGGCACTGGAGATAATTGAGAAGAACAAAATAATTGAAGAGAAACAAAGAAGGCTTGATGAAGCTGAGAAGGCCTTGAGTGAGCTCCGTACTGTTTATATTGTGTGGTCTAATCCTGCTTCAGAGGTTCTATTGACTGGATCTTTTGATGGCTGGACAAGTCAGAGAAGAATGGAAAGATCAGAAAGAGGCACCTTTTCCTTAAACCTGAGGTTGTATCCTGGTAGATATGAGATTAAATTTATTGTTGATGGTGTTTGGAGGAATGATCCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACACCCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGTTGTACCCCTTCATGGAATGTGGTTGTACATCTCTTT] [+] EMBL BI808232 [ GTAGATATGAGATTAAATTTATTGTTGATGGTGTTTGGAGGAATGATCCTCTGCGCCCCCTTGTGA CAATAACGGGCATGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGCCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGTTGTACACCTTaaaaaa ] consensusID : consensus_9695#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 415 fasta sequence [CGTGCCGAATTCGGCACGAGCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTT-TGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTNTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAAGTGTCTGGTTGTACACCTTCA] [+] EMBL BE230410 [CGTGCCGAATTCGGCACGAGCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTT TGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTNTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAAGTGTCTGGTTGTACACCTTCA] [+] EMBL BE230387 [CGTGCCGAATTCGGCACGAGCTCTGCGCCCCCTTGTGAGCAATAACGGGCATGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCATTTTCAGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGAAACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCTTAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTTGTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCCCGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9695#0 GCGGCCGGCTCTCGCTCGGGTGGTCCTCCGGTGGCGCGGAGGCAGGCAGGGCCTCCTCGT 60 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 CGGTCGGCGTGCACCCTGACTACCCTCCCGAGGCGGGGGCGGCGGCGGCGGCGGGGGGCG 120 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 CCTCCGACCTAGCGCATGGAGCCGTGTGGGCGTCGTCCAGGGAGGCGGAAGCTTCGCCGT 180 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 CCGGGCGCCAGCCGGAGACGGAGGAGGAGGAGACGGAGACGAAATTTTTGACTGGGTTGG 240 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 ACGGGATGCTTACCATGCTGCAGAGGGAAAGGGAGAGGGTCCGGCCGCCGCTCCCACGGA 300 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 GCACCGATGGAGCGGGAGGGGAACGCGACAATGTTGCTTTAATGGGTCAGAGTGGAGCAC 360 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 CCAGTCACTCTGCAACTGGTGGCACGTACACTCCAAAGGTACCTGATAATGCAAATATAC 420 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 ATAGTTATCATCCTCAAAATGGAGCACTAGAACATAACAAAAGCTCAAAGAGTTTGACTA 480 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 ATGATGCATGGCGAACATGGTCCCTTGACAAGGGTGGTTTTTCAGATTTTCAAGCCGCTG 540 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 AAATCCATTCAACTAACAGCAGGAAATCATTTAGACATGATGGCCTAGACATTCTTGCAC 600 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 AAGATGACGTGCACGGGCCATCTAATGGTGTGGCTGTACATGATTATGATATTAATGATG 660 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 TAGACTCTGAAAGAGACGATATACATGCACGCCTTCAAAATTTGGAGTTGGATCTTACTG 720 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 CCGCTCTTCATACATTAAGATCAAGATTCGACAAGGTTATATCAGATATGTCCGAAGGTG 780 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 ACAGAGCAAAAGCACCAAATGGGCTCTCCGACGATTGGGAATTTGAAGAGACCAAAGTAA 840 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 TGCAAGCTCAGGAAGAGCTGCGGTCAATCCGTGCAAAAATAGCAGTATTAGAAGGAAAGA 900 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 TGGCACTGGAGATAATTGAGAAGACAAAATAATTGAAGAGANACAAAGAAGGCTTGATGA 960 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 AGCTGAGAAGGCCTTGAGTGAGCTCCGTACTGTTTATATTGTGTGGTCTAATCCTGCTTC 1020 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 AGAGGTTCTATTGACTGGATCTTTTGATGGCTGGACAAGTCAGAGAAGAATGGAAAGATC 1080 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 AGAAAGAGGCACCTTTTCCTTAAACCTGAGGTTGTATCCTGGTAGATATGAGATTAAATT 1140 consensus_9695#1 ------------------------------------------------------------ consensus_9695#0 TATTGTTGATGGTGTTTGGAGGAATGATCCTCTGCGCCCCCTTGTGAGCAATAACGGGCA 1200 consensus_9695#1 ----CGTGCCGAATTCGGCACGAG-----CTCTGCGCCCCCTTGTGAGCAATAACGGGCA 51 ** * * * * ** ******************************* consensus_9695#0 TGAAAACACCCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCAT 1260 consensus_9695#1 TGAAAACAACCTTCTGACTGTCACTTGACTTGAAGCTCCATTTGTCAATCCTGGTAGCAT 111 ******** *************************************************** consensus_9695#0 TTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGA 1320 consensus_9695#1 TTTTGTAGATTGTTATCTAGATCTTTATCAACATGATTAGGCCAATCCATCCAGAATGGA 171 ************************************************************ consensus_9695#0 AACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCT 1380 consensus_9695#1 AACAAAAAAAATGAGTGAGCTGGTTAGCTCTGTTCCACCCTGTAATTATCTGCTTCGCCT 231 ************************************************************ consensus_9695#0 TAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTT 1440 consensus_9695#1 TAAGTCGTCGTTCTTTTTCTTTGGTAGAGATTCTTACAATTTAAACAGTGTAAGGGTGTT 291 ************************************************************ consensus_9695#0 GTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTCTTCCC 1500 consensus_9695#1 GTCAGAATGCCTCACCCTGTTAGATAGGAGAAGAGAATAGTTGTGTATTCTTTTNTTCCC 351 ****************************************************** ***** consensus_9695#0 CGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAGGTGTCTGGTTGTACCCC 1560 consensus_9695#1 CGTCTTTTGCCCGGAGAAGTATAGTTGTGTGATGGGTATCCAAGTGTCTGGTTGTACACC 411 ****************************************** ************** ** consensus_9695#0 TTCATGGAATGTGGTTGTACATCTCTTT 1588 consensus_9695#1 TTCA------------------------ 415 **** |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||