These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9705#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 990 fasta sequence [TCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCCGCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACACGTTGTGTGCGTGTGTGCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTAGCTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGCAGGGGCTGCGGTGGCGGCGGCGGCGGCGGAGGAGGACGGCGCGGGTGGTGGACGAGAGCGCGCTCGCGGCGG-CGGATGGTGGCGACGCCGCCGCGCCTGCAGGTGGCGGC-GGCGACGCGGCGGCGG-TGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCG-GCGCGACGGAGGAGGCGTGGGCGGCCAGCGGGTGGCGGCCGCGCGCCGACGAGGTCAGCCACCTCATGGTGCGGGAGAGCATGCGCTACGCCATCTACGCGTAGCCACAGTAGATTAATTAAGTAACTTAATTACTAGGAGAGGTTAATTAATTAAGCACGTATATATAATTATATATACATGGAGCATATGTATTTGTGTACGGTTTGGTAGGGTACGTGATCGTATACGTATGTAGGTTGTGATGCTGTATAGTACATCACTGTATAGAGTACGCGTGATGCATCTTGGATGTACGTGTAGGTCACTACTACTGCTACTACAAGCGCCATGGTTCGTGACTGGTTTGTCTTGCCTATGTGACATTCTGA] [+] EMBL AK100801 [TCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCCGCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACACGTTGTGTGCGTGTGTGCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTAGCTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGCAGGGGCTGCGGTGGCGGCGGCGGCGGCGGAGGAGGACGGCGCGGGTGGTGGACGAGAGCGCGCTCGCGGCGG CGGATGGTGGCGACGCCGCCGCGCCTGCAGGTGGCGGC GGCGACGCGGCGGCGG TGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCG GCGCGACGGAGGAGGCGTGGGCGGCCAGCGGGTGGCGGCCGCGCGCCGACGAGGTCAGCCACCTCATGGTGCGGGAGAGCATGCGCTACGCCATCTACGCGTAGCCACAGTAGATTAATTAAGTAACTTAATTACTAGGAGAGGTTAATTAATTAAGCACGTATATATAATTATATATACATGGAGCATATGTATTTGTGTACGGTTTGGTAGGGTACGTGATCGTATACGTATGTAGGTTGTGATGCTGTATAGTACATCACTGTATAGAGTACGCGTGATGCATCTTGGATGTACGTGTAGGTCACTACTACTGCTACTACAAGCGCCATGGTTCGTGACTGGTTTGTCTTGCCTATGTGACATTCTGA] [+] EMBL CA754984 [ CGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCCGCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACACGTTGTGTGCGTGTGTGCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTTGCTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGAAGGGGCTGCGGTGGTGGTGGCGGCGGCGGAGGAGGACGGCGCGGTTGGTGGACGAGAGCGCGCTCGCGGCGGTAGTATGTTGGCGACGACGCCGCGCCTGCAGGTGGCGGCTGACGACGCGGCGGAGGTTGGCGGTGGTGCCGATGTTGAACGGGGGCGCCGCGCTTGCCAGGGCGCTGCTTGCGCTGGCGTGC CCATCCGCTTCGACTGC AAGAAGTCGGTGCCGCTCCCGA TGATTAGGCGT ] consensusID : consensus_9705#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 435 fasta sequence [CTAGCTCGATCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGCTTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGC-G--CCAGCGG] [-] EMBL BI306400 [CTAGCTCGATCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGCTTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTTGACGGCGAGGACGGCGGCGCCGGCGCCACGGAGGAGGCGTGGGCGG CCAGCGG] [-] EMBL BI305754 [CTAGCTCGATCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGCTTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGC GGTCCAGCG ] [-] EMBL CB965137 [ TCAGCTCTGTTCCCTCACTTCCCTGCTTATATACACGCCCCCCATGTGTGCTTCCTTCCATCCCATGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATGTCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGAGGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCGATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGACGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGC Gg ] [-] EMBL CB966102 [ CATGCGTCTCCGTGCACGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGCGAGCGTGGGC CCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCA CATCCGCTTCGACGGCGAGGACGGCGGCGCC GCGCGAC A GAGGCGT GGC G CCAG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9705#0 TCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGCTACAAGTGATCGATCGATCGATG 60 consensus_9705#1 ------------------------------------------------------------ consensus_9705#0 TCGTGGTGGATGCGGCAAAGAGGAGTGAGAAGCCAACCCAAGATGATGATGGCGGTGAGA 120 consensus_9705#1 ------------------------------------------------------------ consensus_9705#0 GGTTGCTGCTGCCGGGAGGTGGTCGTGGCGCGAGCCGTGTGATTGCCTGCTCCTCCTCCG 180 consensus_9705#1 ----------------------------------------------------CTAGCTCG 8 ** ** consensus_9705#0 ATCCTGTGTGTGCATGCGTCTCCGTGCACGGCGAGGATGTGCGCCGGCTGCCGTGTCGCC 240 consensus_9705#1 ATCAGCTCTGTTCCCTCACTTCCCTGCTTAT-----ATACACGCCCCCCAT-GTGTGCTT 62 *** * *** * * *** *** ** **** * **** consensus_9705#0 GCCGCCGCCGGAGTCTCGTCGTGAGAGAAGCAAAAGATCGAACA-CGTTGTGTGCGTGTG 299 consensus_9705#1 CCTTCCATCCCA--TGTGTCCTAGGTTAGCTAGCTGATCGATTAGCCTCGTCAGC-TACA 119 * ** * * *** * * * * ****** * * * ** ** * consensus_9705#0 TGCGCGCGCCTAGCTGAAGCTCAGTTTCTTTGGTTGGAGTTGAAGCCGGCCGGCTAGCTA 359 consensus_9705#1 AGTGATCGATCGATCGATGTCGTGGT-----GGATGCGGC-AAAGAGGAGTGAGAAGCCA 173 * * ** ** * * * ** ** * *** * * *** * consensus_9705#0 GCTGGCCATGTGGAGCGTGGCGTCGCTCGTCCGGCAGGGGCTGCGGTGGCGGCGGCGGCG 419 consensus_9705#1 AC---CCAAGATGATGATGGCGGTG----------AGAGGTTGCTGCTGCCG-GGAGGTG 219 * *** * ** ***** * ** ** *** * ** * ** ** * consensus_9705#0 GCGGAGGAGGACGGCGCGGGTGGTGGACGAGAGCGCGCTCGCGGCGGCGGATGGTGGCGA 479 consensus_9705#1 GTCG-------TGGCGCGAGCCGTG--TGATTGCCTGCTCCT--CCTCCGATCCTGTGTG 268 * * ****** * *** ** ** **** * * *** ** consensus_9705#0 CGCCGCCGCGCCTGCAGGTGGCGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGC 539 consensus_9705#1 TGCA--TGCGTCTCCGTGCA-CGGCGGCGACGCGGCGGCGGTGGCGGTGGTGCCGATGGC 325 ** *** ** * * *************************************** consensus_9705#0 GAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGA 599 consensus_9705#1 GAGCGTGGGCGCCGCGCTTGCCAGGGCGCTGCTGGCGCTGGCGTGCACCATCCGCTTCGA 385 ************************************************************ consensus_9705#0 CGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGCGGCCAGCGGGTGGCGGCC 659 consensus_9705#1 CGGCGAGGACGGCGGCGCCGGCGCGACGGAGGAGGCGTGGGCG-CCAGCGG--------- 435 ******************************************* ******* consensus_9705#0 GCGCGCCGACGAGGTCAGCCACCTCATGGTGCGGGAGAGCATGCGCTACGCCATCTACGC 719 consensus_9705#1 ------------------------------------------------------------ consensus_9705#0 GTAGCCACAGTAGATTAATTAAGTAACTTAATTACTAGGAGAGGTTAATTAATTAAGCAC 779 consensus_9705#1 ------------------------------------------------------------ consensus_9705#0 GTATATATAATTATATATACATGGAGCATATGTATTTGTGTACGGTTTGGTAGGGTACGT 839 consensus_9705#1 ------------------------------------------------------------ consensus_9705#0 GATCGTATACGTATGTAGGTTGTGATGCTGTATAGTACATCACTGTATAGAGTACGCGTG 899 consensus_9705#1 ------------------------------------------------------------ consensus_9705#0 ATGCATCTTGGATGTACGTGTAGGTCACTACTACTGCTACTACAAGCGCCATGGTTCGTG 959 consensus_9705#1 ------------------------------------------------------------ consensus_9705#0 ACTGGTTTGTCTTGCCTATGTGACATTCTGA 990 consensus_9705#1 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||