cluster # 9707

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Oryza sativa
cluster # 9707 cluster # 9707 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9707#0 length = 668 sequences # 5

consensus_9707#1 length = 483 sequences # 1

consensusID : consensus_9707#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 668
fasta sequence

                              [TCCATCCATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGTTGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGGGCTGGCGCTGGGGAGGCTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCACGGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAATTCCTTTTT]

[+] EMBL AK107710             [TCCATCCATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGTTGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGGGCTGGCGCTGGGGAGGCTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCACGGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAATT       ]
[+] EMBL AK103209             [       ATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGTTGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGGGCTGGCGCTGGGGAGGTTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCACGGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCAC                                      ]
[+] EMBL BI306616             [                                                                                                                                                                                                                 CGAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAATTCCTTTTT]
[+] EMBL CB965157             [                                                                                                                                                                                                                  GAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTA          ]
[+] EMBL CB965983             [                                                                                                                                                                                                                  GAGGTGCCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGACGGACTGCGCGTGCCAGTGCTGAGC                                                                                                                                                                                                                                           ]




>consensus_9707#0
TCCATCCATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGT
TGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGG
GCTGGCGCTGGGGAGGCTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCAC
GGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGC
GCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTA
CCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCG
GCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGT
GCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCAC
TCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTG
GTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCT
CTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAAT
TCCTTTTT

consensusID : consensus_9707#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 483
fasta sequence

                              [AACCTCACTAAGGGAATAGTGCGGCGCGGCGGCGGCGAGGTGCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTA]

[+] EMBL CB965195             [AACCTCACTAAGGGAATAGTGCGGCGCGGCGGCGGCGAGGTGCAGTACGACCCGCTCAGCTACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTA]




>consensus_9707#1
AACCTCACTAAGGGAATAGTGCGGCGCGGCGGCGGCGAGGTGCAGTACGACCCGCTCAGC
TACGCGCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAG
CTCTACCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCT
CGCCGGCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTG
CGCGTGCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGA
TGCACTCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGG
GAGTGGTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTC
GATCTCTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCA
TTA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9707#0      TCCATCCATCTATCCACCCAACCACTCTCTCGCTCGCTAGCTCATCGCTCACCGGCCGGT 60
consensus_9707#1      ------------------------------------------------------------
                                                                                  

consensus_9707#0      TGAGATGGCGGCGGAGGGCAATGCGTCGTCGTCGTCGACGGCGACGGGAAGGGGGTGCGG 120
consensus_9707#1      ------------------------------------------------------------
                                                                                  

consensus_9707#0      GCTGGCGCTGGGGAGGCTGGTGAGGAAGCTGAGGAGGCAGAGCAGGATGATGCTGTCCAC 180
consensus_9707#1      -------------------------------------------------AACCTCACTAA 11
                                                                       *  **  * * 

consensus_9707#0      GGCGACGTCGTCGCGGCCGCCGGCGGCGGCGAGGTGCCAGTACGACCCGCTCAGCTACGC 240
consensus_9707#1      GGGAATAGTGCGGCG-----CGGCGGCGGCGAGGTGC-AGTACGACCCGCTCAGCTACGC 65
                      **  *    *  ***     ***************** **********************

consensus_9707#0      GCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTA 300
consensus_9707#1      GCGCAACTTCGACCGGAGTGGCCTCGGCGACGACGGCGGCGACGTCTCCGCGCAGCTCTA 125
                      ************************************************************

consensus_9707#0      CCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCG 360
consensus_9707#1      CCACCGCTACACCTTCGCCTCCCGCTTCGTTCTCTCCTCTTCGTCCACGGCCGCTCGCCG 185
                      ************************************************************

consensus_9707#0      GCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGTCTGCGCGT 420
consensus_9707#1      GCAGCCGCAATAGGGGCCGAGACCGATGCTAGCTGAGGCACGCATGGCCGGCCTGCGCGT 245
                      *************************************************** ********

consensus_9707#0      GCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCAC 480
consensus_9707#1      GCCAGTGCTGCGCGTAGCTAAGCTAGCTAGCTTAGCTCTAGCCATTAGAGGTAGATGCAC 305
                      ************************************************************

consensus_9707#0      TCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTG 540
consensus_9707#1      TCTTGTTCTTCATCCTGCAGTGTTGTTAATTAATTAGTGTGTTCATATGAGGAGGGAGTG 365
                      ************************************************************

consensus_9707#0      GTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCT 600
consensus_9707#1      GTGGTTGTAAGGGATTTCTTCCATGGCTCTCTCCATTGGCCGAGATGATGGTTTCGATCT 425
                      ************************************************************

consensus_9707#0      CTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTAAT 660
consensus_9707#1      CTCGTGCTGATTTCTTGGAAATCCATGCACATTATTCCTGATATAAATCGTCCCATTA-- 483
                      **********************************************************  

consensus_9707#0      TCCTTTTT 668
consensus_9707#1      --------