cluster # 9713

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Oryza sativa
cluster # 9713 cluster # 9713 Sequences # 6 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9713#0 length = 808 sequences # 5

consensus_9713#1 length = 506 sequences # 1

consensusID : consensus_9713#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 808
fasta sequence

                              [AACGATCTTAAGAACCGACAACAATACAGATATGTATTTCTAAAAGCAAACGAACTTAAAAACTGATACACACACTAATAACGTACCAAAATACCGGCAAAAACATCTTTAACTTTTATAATACTAGAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTCGACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCCCCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTGAGAAGAAACATGGTCCAGGAGAGGAGGTGCGAGGTGGTATCCTGC]

[+] EMBL CB682804             [AACGATCTTAAGAACCGACAACAATACAGATATGTATTTCTAAAAGCAAACGAACTTAAAAACTGATACACACACTAATAACGTACCAAAATACCGGCAAAAACATCTTTAACTTTTATAATAGTAGAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTCGACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCCCCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCA                                                             ]
[+] EMBL CB673137             [                                                                                   ccttttaggACCGGCAAAAACATCTTTAACTTTTATAATACTTTAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTCGACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCCCCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTGAGAAGAAACATGGTCCAGGAGAGGAGGTGCGAGG           ]
[+] EMBL CB659070             [                                                                                                                       AATACTAGAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTCGACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCCCCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGG                                                      ]
[+] EMBL C71906               [                                                                                                                                      aATTTTTTNAAAAAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGNTTGTATCCACGTAACGCGTGGACGNGTTNAACGACCATGGGGAGGCCGTGCTTGGGGCGGA CGTNATGACGTCGGTGGGCGCNTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGATTATCGNGGCGACGACGGCCTTCGNCTCGA                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[-] EMBL CB682803             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         aTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGGCACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCTGGATCGCCGGCTCCGGGCTGTACAGCCGCAGCGTCTCCAGTAAG ACCGATTTAGCAGCTTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGATGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTGAGAAGAAACATGGTCCAGGAGAGGAGGTGCGAGGTGGTATCCTGC]




>consensus_9713#0
AACGATCTTAAGAACCGACAACAATACAGATATGTATTTCTAAAAGCAAACGAACTTAAA
AACTGATACACACACTAATAACGTACCAAAATACCGGCAAAAACATCTTTAACTTTTATA
ATACTAGAGATTGTTATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAAT
AACGTCCTCCCGAGGGGTGACGAATCGCTTGTATCCACGTCACGCGTGGACGCGTGTGAC
GACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGGTGGGCGCGTGGACGTA
CTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGACGGCCTTCGCCTC
GACCATGGCGAAGCTCTGCCCGACGCACGCCCTCGGCCCCGTGGAGAAGGACAGCAGCTT
GGCCATGGCGCCGCCGCCGCCGTCGAACCTCATCGGGTCGAACACCCCGGCGTCGGCGCC
CCACACCTCCTCGTCGCGGTGCATCGTCGCGATCGGGAACGTCAGCATCGTGCCTCCCGG
CACCGTCACGCCGCCCATCTCCACCGCCGCCGCCGTCCGCCTCCGGATCGCCGGCACCGG
GCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGCTTCAGCTTGCCGAGCAT
GTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCGCCGGCGCACTCTCTCAC
GGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTGAGAAGAAACATGGTCCA
GGAGAGGAGGTGCGAGGTGGTATCCTGC

consensusID : consensus_9713#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 506
fasta sequence

                              [TTTTTTTTTTACCGGGAAAAATATTTTTAACTTTTATAATAGTAGAGATGGTGTATTTTTTTAAACAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTGTGTATCCACGTCACGCGGTGGACGCGTGTGACGACCATGGGGAGGCCGGCTGTGGGGCGGAGCGTGATGACGTCGGCTGGGCGCTGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCGGAGTATCGCGGTGACGACTGGCCTTCGCCTCGACCATGGCGAATGCTCTGCCCTGACTGCAGCCCTCGTGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCGCCAGCACGTCGAACCTCATCGGGCTCGAACACCCCGGCGTCGGGCCCCACACTCCTCGACACGAGGTGCATCGTCCGCCGATCGGGAACGTCAGCATCGTGCCTCCCGAGCACCGCCACGCCGCCCATCTCCACCGCCGACCGC]

[-] EMBL BI797359             [TTTTTTTTTTACCGGGAAAAATATTTTTAACTTTTATAATAGTAGAGATGGTGTATTTTTTTAAACAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGACGAATCGCTGTGTATCCACGTCACGCGGTGGACGCGTGTGACGACCATGGGGAGGCCGGCTGTGGGGCGGAGCGTGATGACGTCGGCTGGGCGCTGTGGACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCGGAGTATCGCGGTGACGACTGGCCTTCGCCTCGACCATGGCGAATGCTCTGCCCTGACTGCAGCCCTCGTGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCGCGCCAGCACGTCGAACCTCATCGGGCTCGAACACCCCGGCGTCGGGCCCCACACTCCTCGACACGAGGTGCATCGTCCGCCGATCGGGAACGTCAGCATCGTGCCTCCCGAGCACCGCCACGCCGCCCATCTCCACCGCCGACCGC]




>consensus_9713#1
TTTTTTTTTTACCGGGAAAAATATTTTTAACTTTTATAATAGTAGAGATGGTGTATTTTT
TTAAACAAATTTAATAACTATTTACATGGACATGCAAATAACGTCCTCCCGAGGGGTGAC
GAATCGCTGTGTATCCACGTCACGCGGTGGACGCGTGTGACGACCATGGGGAGGCCGGCT
GTGGGGCGGAGCGTGATGACGTCGGCTGGGCGCTGTGGACGTACTCCGGCGAGAGCTCCA
GCCTGAACCGCCGGAGTATCGCGGTGACGACTGGCCTTCGCCTCGACCATGGCGAATGCT
CTGCCCTGACTGCAGCCCTCGTGCCCCGTGGAGAAGGACAGCAGCTTGGCCATGGCGCCG
CGCCAGCACGTCGAACCTCATCGGGCTCGAACACCCCGGCGTCGGGCCCCACACTCCTCG
ACACGAGGTGCATCGTCCGCCGATCGGGAACGTCAGCATCGTGCCTCCCGAGCACCGCCA
CGCCGCCCATCTCCACCGCCGACCGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9713#0      AACGATCTTAAGAACCGACAACAATACAGATATGTATTTCTAAAAGCAAACGAACTTAAA 60
consensus_9713#1      ------------------------------------------------------------
                                                                                  

consensus_9713#0      AACTGATACACACACTAATAACGTACCAAAATACCGGCAAAAACATCTTTAACTTTTATA 120
consensus_9713#1      ----------------------TTTTTTTTTTACCGGGAAAAATATTTTTAACTTTTATA 38
                                             *       ****** ***** ** *************

consensus_9713#0      ATACTAGAGATTGT-TATTTTTTTAAAAAAATTTAATAACTATTTACATGGACATGCAAA 179
consensus_9713#1      ATAGTAGAGATGGTGTATTTTTTTAAACAAATTTAATAACTATTTACATGGACATGCAAA 98
                      *** ******* ** ************ ********************************

consensus_9713#0      TAACGTCCTCCCGAGGGGTGACGAATCGCT-TGTATCCACGTCACGCG-TGGACGCGTGT 237
consensus_9713#1      TAACGTCCTCCCGAGGGGTGACGAATCGCTGTGTATCCACGTCACGCGGTGGACGCGTGT 158
                      ****************************** ***************** ***********

consensus_9713#0      GACGACCATGGGGAGGCCGTGCTTGGGGCGGAGCGTGATGACGTCGG-TGGGCGC-GTGG 295
consensus_9713#1      GACGACCATGGGGAGGCCGGCTGTGGGGCGGAGCGTGATGACGTCGGCTGGGCGCTGTGG 218
                      *******************    ************************ ******* ****

consensus_9713#0      ACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCTGAGTATCGCGGCGACGAC-GGCCTT 354
consensus_9713#1      ACGTACTCCGGCGAGAGCTCCAGCCTGAACCGCCGGAGTATCGCGGTGACGACTGGCCTT 278
                      ********************************** *********** ****** ******

consensus_9713#0      CGCCTCGACCATGGCGAA-GCTCTGCCC-GACGCACGCCCTCG-GCCCCGTGGAGAAGGA 411
consensus_9713#1      CGCCTCGACCATGGCGAATGCTCTGCCCTGACTGCAGCCCTCGTGCCCCGTGGAGAAGGA 338
                      ****************** ********* ***    ******* ****************

consensus_9713#0      CAGCAGCTTGGCCATGGCGCCGCCGCCGC-CGTCGAACCTCATCGGG-TCGAACACCCCG 469
consensus_9713#1      CAGCAGCTTGGCCATGGCGCCGCGCCAGCACGTCGAACCTCATCGGGCTCGAACACCCCG 398
                      ***********************  * ** ***************** ************

consensus_9713#0      GCGTCGGCGCCCCACACCTCCTCGTCGCG--GTGCATCGTCG--CGATCGGGAACGTCAG 525
consensus_9713#1      GCGTCGG-GCCCCACAC-TCCTCGACACGAGGTGCATCGTCCGCCGATCGGGAACGTCAG 456
                      ******* ********* ****** * **  **********   ****************

consensus_9713#0      CATCGTGCCTCCCG-GCACCGTCACGCCGCCCATCTCCACCGCCG-CCGCCGTCCGCCTC 583
consensus_9713#1      CATCGTGCCTCCCGAGCACCGCCACGCCGCCCATCTCCACCGCCGACCGC---------- 506
                      ************** ****** *********************** ****          

consensus_9713#0      CGGATCGCCGGCACCGGGCTGTACAGCCGCAGCGTCTCCAGTAAGAACTGATTTAGCAGC 643
consensus_9713#1      ------------------------------------------------------------
                                                                                  

consensus_9713#0      TTCAGCTTGCCGAGCATGTCGTAGGTGGGGAGCTGGTCGTCGTCGTCCCCGGCGCCGGCG 703
consensus_9713#1      ------------------------------------------------------------
                                                                                  

consensus_9713#0      CCGGCGCACTCTCTCACGGCTTCTTCCCGGAGCTTGTCCTGCCAGTCCGGGTGCGTGCTG 763
consensus_9713#1      ------------------------------------------------------------
                                                                                  

consensus_9713#0      AGAAGAAACATGGTCCAGGAGAGGAGGTGCGAGGTGGTATCCTGC 808
consensus_9713#1      ---------------------------------------------