These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9717#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 928 fasta sequence [CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACACCTTGCCCATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGCTCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGAGACGCTGTTGCTTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCACTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCATCAGGCCACCGCCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTGATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNACATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN] [+] EMBL CB677488 [CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACACCTTGCCCATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGCTCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGAGACGCTGTTGCTTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCACTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCA ] [+] EMBL CF195870 [ TGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGAAACCCATGCTCCATGGGTCCTGCCATCAGGCCACCGCCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTGATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNACATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN] consensusID : consensus_9717#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 445 fasta sequence [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA-CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCG-CCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGGTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTC-TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA-TGCGCACA-TTTG-TTTGCCCA-CTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACA-CTGATAATTAAAGCTAATCTGCCATTGCCAACAGCGAGTGACCCAACGCTTTTGCATCACAAAATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA] [+] EMBL OSS12042A [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGNCGTGGGCGCCG CCAAGNAGGCCGAGCTCCGGGCGACCTATTGCTCCTTCATCCGCGACGTCGNNCTCAGGCTGCAGGTGCCTCAGGTGACAATNGNGACGGCAACCTTGCTC TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAANATGCAGTTCTTCAGATACGGA TGCGCACA TTTG TTTGNCCA CTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACA CTGATA ] [+] EMBL OSS12014A [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCG CCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGTTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTTGCCATCGCTTTTATCTCCGACAGTCTCACGNCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGATTGCGCACA TTTGTTTTGCCCA CTAGTTGTGG ANTATTCAATGTTGAAAATCTTCCTCTTAGGTTATAGTGAC ] [+] EMBL OSS11970A [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGNGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCC CCAAGGAGGCCGAACTCCGGGCGACCTACTGCTCCTTCATCCGCNACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCNACNGCAACCTTGCTC TNNCATCGNTTTTATCTCCGACAGTNTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA TGCGCACA TTTG TTTGCCCA CTAGTTGTGGCACTATCCAATGTTGAAA ] [+] EMBL BI798817 [ TACGTCACCGAGGGATGAGGTCGAGAGGGGTTCCCCGTCGAGGAGGGACGGCGTCGGCCCCGCCCAAGGA GCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAG CT GTGACCATCGCGACGGCAACCTTGCTC TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA TGCGCACACTTTG TTTGCCCACCTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACACCTGATAATTAAAGCTAATCTGCCATTGCCAACAGCGAGTGACCCAACGCTTTTGCATCACAAAATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9717#0 ----CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGG 56 consensus_9717#1 GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGG 60 ******************************************************** consensus_9717#0 GGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACC 116 consensus_9717#1 GGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACC 120 ************************************************************ consensus_9717#0 TACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCG 176 consensus_9717#1 TACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGGTGCCTCAGGTGACAATCGCG 180 *************************************** ******************** consensus_9717#0 ACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGG 236 consensus_9717#1 ACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGG 240 ************************************************************ consensus_9717#0 CAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACAC-CTTGCCC 295 consensus_9717#1 CAG---GTAAAAAAAAAATGCAGTTCTTCAGATACGGA---TGCGCACATTTGTTTGCCC 294 *** ** ** *** * * * * ** * ** *** ****** consensus_9717#0 ATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGC 355 consensus_9717#1 ACTA-GTTGTGGCACTATC-CAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACACTGA 352 * ** *** ** ** * *** * * * * * ** ** *** consensus_9717#0 TCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGA 415 consensus_9717#1 TAATTAAAGCTAATCTGCCATTGCCAACAGCGAGT-GACCCAACGCTTTTGCATCACAAA 411 * * ** *** * ** ** * * * *** * * consensus_9717#0 GACGCTGTTGC--TTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCA 473 consensus_9717#1 ATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA-------------------------- 445 * ** * * ***** * *** * consensus_9717#0 CTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTG 533 consensus_9717#1 ------------------------------------------------------------ consensus_9717#0 AATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATA 593 consensus_9717#1 ------------------------------------------------------------ consensus_9717#0 GCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGA 653 consensus_9717#1 ------------------------------------------------------------ consensus_9717#0 AAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAA 713 consensus_9717#1 ------------------------------------------------------------ consensus_9717#0 ATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCATCAGGCCACCG 773 consensus_9717#1 ------------------------------------------------------------ consensus_9717#0 CCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTG 833 consensus_9717#1 ------------------------------------------------------------ consensus_9717#0 ATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNAC 893 consensus_9717#1 ------------------------------------------------------------ consensus_9717#0 ATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN 928 consensus_9717#1 ----------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||