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Oryza sativa
cluster # 9717 cluster # 9717       Sequences # 6       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9717#0 length = 928 sequences # 2  
consensus_9717#1 length = 445 sequences # 4  

consensusID : consensus_9717#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 928
fasta sequence
                              [CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACACCTTGCCCATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGCTCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGAGACGCTGTTGCTTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCACTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCATCAGGCCACCGCCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTGATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNACATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN]

[+] EMBL CB677488             [CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACACCTTGCCCATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGCTCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGAGACGCTGTTGCTTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCACTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCA                                                                                                                                                                      ]
[+] EMBL CF195870             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              TGGAAGTGAAACAAGTTGCGGTGAATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAGAGCTATTTATGGGAAGAAACCCATGCTCCATGGGTCCTGCCATCAGGCCACCGCCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTGATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNACATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN]


>consensus_9717#0 CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGGGGTT CGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACCTACT GCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCGACGG CAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGA CCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACACCTTGCCCATTAC AACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGCTCACA GAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGAGACGC TGTTGCTTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCACTAAAGC TCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTGAATCTAA TAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATAGCAGCAG GGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGAAAAGTAT GGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAAATGACAG AGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCATCAGGCCACCGCCAACTC CAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTGATGGAGN NNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNACATAACAC ACTCTTTGGGCGCTGTNANNNNNNNTAN



consensusID : consensus_9717#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 445
fasta sequence
                              [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA-CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCG-CCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGGTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTC-TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA-TGCGCACA-TTTG-TTTGCCCA-CTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACA-CTGATAATTAAAGCTAATCTGCCATTGCCAACAGCGAGTGACCCAACGCTTTTGCATCACAAAATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA]

[+] EMBL OSS12042A            [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGNCGTGGGCGCCG CCAAGNAGGCCGAGCTCCGGGCGACCTATTGCTCCTTCATCCGCGACGTCGNNCTCAGGCTGCAGGTGCCTCAGGTGACAATNGNGACGGCAACCTTGCTC TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAANATGCAGTTCTTCAGATACGGA TGCGCACA TTTG TTTGNCCA CTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACA CTGATA                                                                                           ]
[+] EMBL OSS12014A            [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGGGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCG CCAAGGAGGCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGTTGCCTCAGGTGACAATCGCGACGGCAACCTTGCTCTTGCCATCGCTTTTATCTCCGACAGTCTCACGNCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGATTGCGCACA TTTGTTTTGCCCA CTAGTTGTGG ANTATTCAATGTTGAAAATCTTCCTCTTAGGTTATAGTGAC                                                                                                   ]
[+] EMBL OSS11970A            [GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCA CGAGNGATGAGGTCGAGAGGGGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCC  CCAAGGAGGCCGAACTCCGGGCGACCTACTGCTCCTTCATCCGCNACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCNACNGCAACCTTGCTC TNNCATCGNTTTTATCTCCGACAGTNTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA TGCGCACA TTTG TTTGCCCA CTAGTTGTGGCACTATCCAATGTTGAAA                                                                                                                           ]
[+] EMBL BI798817             [                                 TACGTCACCGAGGGATGAGGTCGAGAGGGGTTCCCCGTCGAGGAGGGACGGCGTCGGCCCCGCCCAAGGA GCCGAGCTCCGGGCGACCTACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAG    CT   GTGACCATCGCGACGGCAACCTTGCTC TGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGGCAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGA TGCGCACACTTTG TTTGCCCACCTAGTTGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACACCTGATAATTAAAGCTAATCTGCCATTGCCAACAGCGAGTGACCCAACGCTTTTGCATCACAAAATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA]


>consensus_9717#1 GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGG GGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACC TACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGGTGCCTCAGGTGACAATCGCG ACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGG CAGGTAAAAAAAAAATGCAGTTCTTCAGATACGGATGCGCACATTTGTTTGCCCACTAGT TGTGGCACTATCCAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACACTGATAATTAAA GCTAATCTGCCATTGCCAACAGCGAGTGACCCAACGCTTTTGCATCACAAAATCAGTGGT CCCATTTCATCCGTTAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9717#0      ----CGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGG 56
consensus_9717#1      GTGGCGATGGGGGAGGGCGCGGCGGGGTCGTGGTACGTCACGAGGGATGAGGTCGAGAGG 60
                          ********************************************************

consensus_9717#0      GGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACC 116
consensus_9717#1      GGTTCGCCGTCGAGGAGGGACGGCGTCGGCGCCGCCAAGGAGGCCGAGCTCCGGGCGACC 120
                      ************************************************************

consensus_9717#0      TACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGCTGCCTCAGGTGACAATCGCG 176
consensus_9717#1      TACTGCTCCTTCATCCGCGACGTCGGCCTCAGGCTGCAGGTGCCTCAGGTGACAATCGCG 180
                      *************************************** ********************

consensus_9717#0      ACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGG 236
consensus_9717#1      ACGGCAACCTTGCTCTGCCATCGCTTTTATCTCCGACAGTCTCACGCCAAGAACGAGTGG 240
                      ************************************************************

consensus_9717#0      CAGACCGTTGCAACTGTCTGCGTATTTCTTGCTTCGAAGATTGAAGACACAC-CTTGCCC 295
consensus_9717#1      CAG---GTAAAAAAAAAATGCAGTTCTTCAGATACGGA---TGCGCACATTTGTTTGCCC 294
                      ***   **   **     ***   * *   * * ** *   **   ***     ******

consensus_9717#0      ATTACAACGTGTCATCATTGTGGCATATGAAACCATGTACCGGAAAGACTGTAACGCTGC 355
consensus_9717#1      ACTA-GTTGTGGCACTATC-CAATGTTGAAAATCTTCCTCTGAGGTTATAGTGACACTGA 352
                      * **    *** **  **       *   *** * *   * *     *  ** ** *** 

consensus_9717#0      TCACAGAATCTACCAGAAGGAAGTTCTTGAGAAGCAGAAAGAGCTCATTTTGGTAGGGGA 415
consensus_9717#1      TAATTAAAGCTAATCTGCCATTGCCAACAGCGAGT-GACCCAACGCTTTTGCATCACAAA 411
                      * *   ** ***          *         **  **   * * * ***   *     *

consensus_9717#0      GACGCTGTTGC--TTTCAACAATTAGGTTTGATTTCAACATACAGCATCCTTACGAGCCA 473
consensus_9717#1      ATCAGTGGTCCCATTTCATCCGTTAAAAAAAAAA-------------------------- 445
                        *  ** * *  ***** *  ***      *                            

consensus_9717#0      CTAAAGCTCGCTCTCAAGAAGCTGGGCATTTTCCAGATGGAAGTGAAACAAGTTGCGGTG 533
consensus_9717#1      ------------------------------------------------------------
                                                                                  

consensus_9717#0      AATCTAATAAATGATGCGATTCGGACTACTTTGGTTGTGCAGTTTAAACCTCACTACATA 593
consensus_9717#1      ------------------------------------------------------------
                                                                                  

consensus_9717#0      GCAGCAGGGTCCCTCTACCTTGCTGCTAAGTTTAATAATTTTAGACTTCCTTCTGATGGA 653
consensus_9717#1      ------------------------------------------------------------
                                                                                  

consensus_9717#0      AAAGTATGGTGGCATGAGTTTGATGTTGCTCCAAAGCAGTTACAAGCTGTTATCCAACAA 713
consensus_9717#1      ------------------------------------------------------------
                                                                                  

consensus_9717#0      ATGACAGAGCTATTTATGGGAAGANACCCATGCTCCATGGGTCCTGCCATCAGGCCACCG 773
consensus_9717#1      ------------------------------------------------------------
                                                                                  

consensus_9717#0      CCAACTCCAAGTCTGATGGAGAGACAGCAGGTGATCAGGCCACCACCAACTCCAACTCTG 833
consensus_9717#1      ------------------------------------------------------------
                                                                                  

consensus_9717#0      ATGGAGNNNCAGCCGATAATCAGGCCACTGCCAACTCCAACTCTGATGGNNNNTNNNNAC 893
consensus_9717#1      ------------------------------------------------------------
                                                                                  

consensus_9717#0      ATAACACACTCTTTGGGCGCTGTNANNNNNNNTAN 928
consensus_9717#1      -----------------------------------
                                                         




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)