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Oryza sativa
cluster # 9721 cluster # 9721       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9721#0 length = 1416 sequences # 4  
consensus_9721#1 length = 1403 sequences # 1  
consensus_9721#2 length = 1236 sequences # 1  

consensusID : consensus_9721#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1416
fasta sequence
                              [GCCGCTCTGTCAAGGGCCTACTACTACAGCGTTGCGCCGTCCGCCTGCGTCCTTGCTTGATGCTTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGACATTTAGTAACCACTATAAAAGCGTGGTGCTAATCAGAAGGGGATCAGATGGCATCGGCACTGGCTTTATTATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAGGTAACCCCTCTGGTGCTTTAAAGGTCAGACTACCTAGGGACACAAAGGATTATGTTGCTGAGCTGCTATATGAGCATCAGGGTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTGGAGAATGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCGTTCAGCTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGATCAGTCATAAGACCGGCAAACCAAAATGGAATGATGGGCAGCCAGGATGTTGTCTACAGTGCCGCTGCAAGACATGGCGCCTCAGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGAGTACTATATTCAATGTCTACAAATAGCCAAGTTGCGTATGCTCGATCAAGTACTACTGTTCACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCTGCAATAACCACTGAGAAGATGATAGAACTTGTAGTAAAACCTCTAAATGATTCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCATGTGGACTCAATGGGTGTAGACTCTATTAATGTAATCGCCCATGGTTGTTTGTTATTTTTATTGATGTCCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTAGCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTACGGATAGTTATTGCATGCTTTTAAAGC-TAGAATTCCTTTCAAAAAAAAATGTTATCGTTGACAACTTTTTCTAAAAAAAAAAAAAAAGA]

[+] EMBL CB681019             [GCCGCTCTGTCAAGGGCCTACTACTACAGCGTTGCGCCGTCCGCCTGCGTCCTTGCTTGATGCTTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGACATTTAGTAACCACTATAAAAGCGTGGTGCTAATCAGAAGGGGATCAGATGGCATCGGCACTGGCTTTATTATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAGGTAACCCCTCTGGTGCTTTAAAGGTCAGACTACCTACGGACACAAAGGATTATGTTGCTGAGCTGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AK106134             [                                                               TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGACATTTAGTAACCACTATAAAAGCGTGGTGCTAATCAGAAGGGGATCAGATGGCATCGGCACTGGCTTTATTATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAGGTAACCCCTCT CTGCTTTAAAGGTCAGACTACCTAGGGACACAAAGGATTATGTTGCTGAGCTGCTATATGAGCATCAGGGTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTGGAGAATGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCGTTCAGCTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGATCAGTCAT   ACCGGCAAACCAAAATGGAATGATGGGCAGCCAGGATGTTGTCTACAGTGCCGCTGCAAGACATGGCGCCTCAGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGAGTACTATATTCAATGTCTACAAATAGCCAAGTTGCGTATGCTCGATCAAGTACTACTGTTCACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCTGCAATAACCACTGAGAAGATGATAGAACTTGTAGTAAAACCTCTAAATGATTCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCATGTGGACTCAATGGGTGTAGACTCTATTAATGTAATCGCCCATGGTTGTTTGTTATTTTTATTGATGTCCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTAGCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTACGGATAGTTATTGCATGCTTTTAAAGC TAGAATTCCTTTCAAAAAAAAATGTTATCGTTGAC                           ]
[+] EMBL AK058539             [                                                               TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGATCTCCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGACATTTAGTAACCACTATAAAAGCGTGGTGCTAATCAGAAGGGGATCAGATGGCATCGGCACTGGCTTTATTATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAGGTAACCCCTCTGGTGCTTTAAAGGTCAGACTACCTAGGGACACAAAGGATTATGTTGCTGAGCTGCTATATGAGCATCAGGGTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTGGAGAATGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCGTTCAGCTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGATCAGTCATAAGACCGGCAAACCAAAATGGAATGATGGGCAGCCAGGATGTTGTCTACAGTGCCGCTGCAAGACATGGCGCCTCAGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGAGTACTATATTCAATGTCTACAAATAGCCAAGTTGCGTATGCTCGATCAAGTACTACTGTTCACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCTGCAATAACCACTGAGAAGATGATAGAACTTGTAGTAAAACCTCTAAATGATTCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCATGTGGACTCAATGGGTGTAGACTCTATTAATGTAATCGCCCATGGTTGTTTGTTATTTTTATTGATGTCCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTAGCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTACGGATAGTTATTGCATGCTTTTAAAGC TAG                                                           ]
[-] EMBL CB681020             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  GGTAACCCCTCTGGTGCTTTAAAGGTCAGACTACCTAGGGACACAAAGGATTATGTTGCTGAGCTGCTATATGAGCATCAGGGTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTGGAGAATGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCGTTCAGCTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGATCAGTCATAAGGCCGGCAAACCAAAATGGAATGATGGGCAGCCAGGATGTTGTTTACAGTTCCGCTGCAAGACATGGCGCCTCAGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGAGTACTATATTCAATGTTTACAAATAGCCAAGTTGCGTATGCTCGATCAAGTACTCCTGTTCACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCTGCAATAACCCCTGAGAAGATGATAGAACTTGTAGTAAAACCTTTAAACGATTCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCACGTGGACTCAATGGGTGTAGACTCTATTAATGTAATCGCCCATGGTTGCTTGTTATTTTTATTGATGTCCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTAGCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTACGGATAGTTATTGCATGCTTTTAAAGCTTAGAATTCCTTTCAAAAAAGAATGTTATCGTTGACAACTTTTTCTAAAAAAAAAAAAAAAGA]


>consensus_9721#0 GCCGCTCTGTCAAGGGCCTACTACTACAGCGTTGCGCCGTCCGCCTGCGTCCTTGCTTGA TGCTTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCG CCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCT CCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCT CGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCC TCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGG CTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCC GGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGACATTTAGTAAC CACTATAAAAGCGTGGTGCTAATCAGAAGGGGATCAGATGGCATCGGCACTGGCTTTATT ATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAGGTAAC CCCTCTGGTGCTTTAAAGGTCAGACTACCTAGGGACACAAAGGATTATGTTGCTGAGCTG CTATATGAGCATCAGGGTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTGGAGAA TGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCGTTCAG CTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGA TCAGTCATAAGACCGGCAAACCAAAATGGAATGATGGGCAGCCAGGATGTTGTCTACAGT GCCGCTGCAAGACATGGCGCCTCAGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGA GTACTATATTCAATGTCTACAAATAGCCAAGTTGCGTATGCTCGATCAAGTACTACTGTT CACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCTGCAATAACCACTGAGAAGATG ATAGAACTTGTAGTAAAACCTCTAAATGATTCAGAGTTAGACGATTGATTGGACTGGCTA TGGATTGCAAGGGCATGTGGACTCAATGGGTGTAGACTCTATTAATGTAATCGCCCATGG TTGTTTGTTATTTTTATTGATGTCCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTT AATGTTTGAAATTATCAATAGTTAGCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGA CAGCTTACGGATAGTTATTGCATGCTTTTAAAGCTAGAATTCCTTTCAAAAAAAAATGTT ATCGTTGACAACTTTTTCTAAAAAAAAAAAAAAAGA



consensusID : consensus_9721#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1403
fasta sequence
                              [TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGCTCCTGCAGGTTATACCTCTAGCAGTTTAGCTCATAGCTTCATTATTCCCATTTAGTCATTGTGTTTGAACTTTCTGCCAATTGCCACTACCATTTGCTAATCTGTGATTAGTGAATGGGATGCTGACTTGCTGCCGCTGTAGTTTGTAGGATTGGTAAAACATGAAGAGAAATGGGGATATTGCTGTTGAACTATCTATACTTCTATACTATGAGCTGGTGGTTCTGCCAACCACCACCACCACCACCACTGAAATATGGGCCATGGTGTTAGTATAAGTTTCTGAGTGCTTGGTCAGCTTTTTTCTGTACTTCTGTAGAATAGTTGTGTAGTCTTTACTCTCTAGCTGGTATTTGAAGTACTATATAAACTAAAGTTCTTTAATTTTATATTGATTTACCTTTTGTCATCTTGATTCAACTAAAGAAAACCCACAAACTTTTTAGGTTTTAATTGTAATTTAAAATGACATAGACAGCACAATTCATTGAAGAGTACATATTTTGTAATCATATCAAAGGACATATTGTTAGCACAATTGGAGTCATCTATCTATACTGAAACAAACTATGCCATTTTTCTTTCTGTTTGTTAATACAAAGAAGCTAATATTTGTTGCAACACGGATGTAATTTGTTTGTTGCTGTTTTGAATCTGGTGTAACGCACAGGTATTTGGCTAGTCTATATTTATTATTTGTACCTTTTGAACTTGCTTGTTTCATTAGTCGATTATTTGTTTTATAAGATGTTATTTGCTATATTTGTATCTCTTTTTACCAAATTTATACTTGCAATGTTCAAAAATTTTTGGCATGTAATGTGAAATTGTGAAGTAGGGCTAGTCAACCATAAATTCCTGGCTATGCCAGTCTCCGTCCGGTTACCAGAGGAGCTCAATCCAGTTGCTTGCAGCTTGTATCAGGCGGTGAGCAGCTCACTCCTGTAGATCCGCTTGCTTGCAGCTTGGATCGGGCTGGGAGAAGCTTATTTTGGGACAAACGGAAGGAGGCAAAGATGAACTTTTTATGGAACGGAGGGAGT]

[+] EMBL AK110926             [TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGCTCCTGCAGGTTATACCTCTAGCAGTTTAGCTCATAGCTTCATTATTCCCATTTAGTCATTGTGTTTGAACTTTCTGCCAATTGCCACTACCATTTGCTAATCTGTGATTAGTGAATGGGATGCTGACTTGCTGCCGCTGTAGTTTGTAGGATTGGTAAAACATGAAGAGAAATGGGGATATTGCTGTTGAACTATCTATACTTCTATACTATGAGCTGGTGGTTCTGCCAACCACCACCACCACCACCACTGAAATATGGGCCATGGTGTTAGTATAAGTTTCTGAGTGCTTGGTCAGCTTTTTTCTGTACTTCTGTAGAATAGTTGTGTAGTCTTTACTCTCTAGCTGGTATTTGAAGTACTATATAAACTAAAGTTCTTTAATTTTATATTGATTTACCTTTTGTCATCTTGATTCAACTAAAGAAAACCCACAAACTTTTTAGGTTTTAATTGTAATTTAAAATGACATAGACAGCACAATTCATTGAAGAGTACATATTTTGTAATCATATCAAAGGACATATTGTTAGCACAATTGGAGTCATCTATCTATACTGAAACAAACTATGCCATTTTTCTTTCTGTTTGTTAATACAAAGAAGCTAATATTTGTTGCAACACGGATGTAATTTGTTTGTTGCTGTTTTGAATCTGGTGTAACGCACAGGTATTTGGCTAGTCTATATTTATTATTTGTACCTTTTGAACTTGCTTGTTTCATTAGTCGATTATTTGTTTTATAAGATGTTATTTGCTATATTTGTATCTCTTTTTACCAAATTTATACTTGCAATGTTCAAAAATTTTTGGCATGTAATGTGAAATTGTGAAGTAGGGCTAGTCAACCATAAATTCCTGGCTATGCCAGTCTCCGTCCGGTTACCAGAGGAGCTCAATCCAGTTGCTTGCAGCTTGTATCAGGCGGTGAGCAGCTCACTCCTGTAGATCCGCTTGCTTGCAGCTTGGATCGGGCTGGGAGAAGCTTATTTTGGGACAAACGGAAGGAGGCAAAGATGAACTTTTTATGGAACGGAGGGAGT]


>consensus_9721#1 TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCA CTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCG CCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGG GACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCT GCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTG CCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGC TCCTGCAGGTTATACCTCTAGCAGTTTAGCTCATAGCTTCATTATTCCCATTTAGTCATT GTGTTTGAACTTTCTGCCAATTGCCACTACCATTTGCTAATCTGTGATTAGTGAATGGGA TGCTGACTTGCTGCCGCTGTAGTTTGTAGGATTGGTAAAACATGAAGAGAAATGGGGATA TTGCTGTTGAACTATCTATACTTCTATACTATGAGCTGGTGGTTCTGCCAACCACCACCA CCACCACCACTGAAATATGGGCCATGGTGTTAGTATAAGTTTCTGAGTGCTTGGTCAGCT TTTTTCTGTACTTCTGTAGAATAGTTGTGTAGTCTTTACTCTCTAGCTGGTATTTGAAGT ACTATATAAACTAAAGTTCTTTAATTTTATATTGATTTACCTTTTGTCATCTTGATTCAA CTAAAGAAAACCCACAAACTTTTTAGGTTTTAATTGTAATTTAAAATGACATAGACAGCA CAATTCATTGAAGAGTACATATTTTGTAATCATATCAAAGGACATATTGTTAGCACAATT GGAGTCATCTATCTATACTGAAACAAACTATGCCATTTTTCTTTCTGTTTGTTAATACAA AGAAGCTAATATTTGTTGCAACACGGATGTAATTTGTTTGTTGCTGTTTTGAATCTGGTG TAACGCACAGGTATTTGGCTAGTCTATATTTATTATTTGTACCTTTTGAACTTGCTTGTT TCATTAGTCGATTATTTGTTTTATAAGATGTTATTTGCTATATTTGTATCTCTTTTTACC AAATTTATACTTGCAATGTTCAAAAATTTTTGGCATGTAATGTGAAATTGTGAAGTAGGG CTAGTCAACCATAAATTCCTGGCTATGCCAGTCTCCGTCCGGTTACCAGAGGAGCTCAAT CCAGTTGCTTGCAGCTTGTATCAGGCGGTGAGCAGCTCACTCCTGTAGATCCGCTTGCTT GCAGCTTGGATCGGGCTGGGAGAAGCTTATTTTGGGACAAACGGAAGGAGGCAAAGATGA ACTTTTTATGGAACGGAGGGAGT



consensusID : consensus_9721#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1236
fasta sequence
                              [TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGACATTTAGTAACCACTATAAAAGCGTGGTGCTAATCAGAAGGGGATCAGATGGCATCGGCACTGGCTTTATTATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAGGGTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTGGAGAATGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCGTTCAGCTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGATCAGTCATAAGACCGGCAAACCAAAATGGAATGATGGGCAGCCAGGATGTTGTCTACAGTGCCGCTGCAAGACATGGCGCCTCAGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGAGTACTATATTCAATGTCTACAAATAGCCAAGTTGCGTATGCTCGATCAAGTACTACTGTTCACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCTGCAATAACCACTGAGAAGATGATAGAACTTGTAGTAAAACCTCTAAATGATTCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCATGTGGACTCAATGGGTGTAGACTCTATTAATGTAATCGCCCATGGTTGTTTGTTATTTTTATTGATGTCCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTAGCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTACGGATAGTTATTGCATGCTTTTAAAGCTAGAATTCCTTTCAAAAAAAAATGT]

[+] EMBL AK059752             [TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGACATTTAGTAACCACTATAAAAGCGTGGTGCTAATCAGAAGGGGATCAGATGGCATCGGCACTGGCTTTATTATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAGGGTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTGGAGAATGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCGTTCAGCTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGATCAGTCATAAGACCGGCAAACCAAAATGGAATGATGGGCAGCCAGGATGTTGTCTACAGTGCCGCTGCAAGACATGGCGCCTCAGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGAGTACTATATTCAATGTCTACAAATAGCCAAGTTGCGTATGCTCGATCAAGTACTACTGTTCACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCTGCAATAACCACTGAGAAGATGATAGAACTTGTAGTAAAACCTCTAAATGATTCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCATGTGGACTCAATGGGTGTAGACTCTATTAATGTAATCGCCCATGGTTGTTTGTTATTTTTATTGATGTCCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTAGCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTACGGATAGTTATTGCATGCTTTTAAAGCTAGAATTCCTTTCAAAAAAAAATGT]


>consensus_9721#2 TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCGCCA CTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCTCCG CCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCTCGG GACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCCTCT GCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGGCTG CCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCCGGC TCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGACATTTAGTAACCAC TATAAAAGCGTGGTGCTAATCAGAAGGGGATCAGATGGCATCGGCACTGGCTTTATTATT GGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAGGGTTATGA TCTTGCAATTATTAAAGTTAATGGAGTGAGTGGAGAATGCCCAATTCTTCAATTTGGTGA TTTAGAAGGTGTGGCGCATAGGGCCAATGTCGTTCAGCTTGGATATATCCTTGGGTCACA GTTTGCTTTAAACTTGGACCCCTCAGTATCTCCTGGATCAGTCATAAGACCGGCAAACCA AAATGGAATGATGGGCAGCCAGGATGTTGTCTACAGTGCCGCTGCAAGACATGGCGCCTC AGGATCTGCAGTGATGTTTGATGATAAAGTTATTGGAGTACTATATTCAATGTCTACAAA TAGCCAAGTTGCGTATGCTCGATCAAGTACTACTGTTCACATGGCCTTGAAGAATTGGTT GCATCCAAATGATGCTGCAATAACCACTGAGAAGATGATAGAACTTGTAGTAAAACCTCT AAATGATTCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCATGTGGACT CAATGGGTGTAGACTCTATTAATGTAATCGCCCATGGTTGTTTGTTATTTTTATTGATGT CCTCTTTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTT AGCTAGCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTACGGATAGTTATTGCAT GCTTTTAAAGCTAGAATTCCTTTCAAAAAAAAATGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9721#0      GCCGCTCTGTCAAGGGCCTACTACTACAGCGTTGCGCCGTCCGCCTGCGTCCTTGCTTGA 60
consensus_9721#2      ------------------------------------------------------------
consensus_9721#1      ------------------------------------------------------------
                                                                                  

consensus_9721#0      TGCTTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCG 120
consensus_9721#2      ---TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCG 57
consensus_9721#1      ---TTCGCACGCGCGTGACGGCGCCGCCGTTCCTCGCCTCTCTCCTCTCTCCTCTCTCCG 57
                         *********************************************************

consensus_9721#0      CCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCT 180
consensus_9721#2      CCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCT 117
consensus_9721#1      CCACTCCGCCTCTCCCCCATCCCATCGTCCACCCGGCCCGAGCTGCGGAGGCGCAGACCT 117
                      ************************************************************

consensus_9721#0      CCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCT 240
consensus_9721#2      CCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCT 177
consensus_9721#1      CCGCCGCTGCGCCCGCATCGGCACAGCTACAGACCAACGCGGCCGCCGGCGCTGGGAGCT 177
                      ************************************************************

consensus_9721#0      CGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCC 300
consensus_9721#2      CGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCC 237
consensus_9721#1      CGGGACGCGAGGACAGCGGTACAGCCGGACCCCCGGCTGACTGACGCAGTGCCGCCTGCC 237
                      ************************************************************

consensus_9721#0      TCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGG 360
consensus_9721#2      TCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGG 297
consensus_9721#1      TCTGCCCGTCGCGGCGTCGCCGTTAGCCTCTTCTCTTGCTCTCTGCCCTCTGCGCTACGG 297
                      ************************************************************

consensus_9721#0      CTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCC 420
consensus_9721#2      CTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCC 357
consensus_9721#1      CTGCCGGCTCGTGTGACTCAGTGGCTGTGAAGTCCTTCCCAGCGGGCGAGACGGCGACCC 357
                      ************************************************************

consensus_9721#0      GGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGAC--ATTTAGTA 478
consensus_9721#2      GGCTCCTGCAGTTGAGTTGCCATGGATATTGAGCGACAAGTTCAAGAGAC--ATTTAGTA 415
consensus_9721#1      GGCTCCTGCAGGTTATACCTCTAGCAGTTTAGCTCATAGCTTCATTATTCCCATTTAGTC 417
                      *********** * *     *  * *  **     * *  ****  *  *  ******* 

consensus_9721#0      ACCACTATAAAAGCGTGGTGCTAATCAGAAGGGG-ATCAGATGGCATCGG--CACTGGCT 535
consensus_9721#2      ACCACTATAAAAGCGTGGTGCTAATCAGAAGGGG-ATCAGATGGCATCGG--CACTGGCT 472
consensus_9721#1      ATTG-TGTTTGAACTTTCTGCCAATTGCCACTACCATTTGCTAATCTGTGATTAGTGAAT 476
                      *    * *   * * *  *** ***    *     **  * *    *  *   * **  *

consensus_9721#0      TTATTATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAG 595
consensus_9721#2      TTATTATTGGTAAAACAAGGAAAAGTTATGTTGCGATGACATGCTACCATGTCATCTCAG 532
consensus_9721#1      GGGATGCTGACTTGCTGCCGCTGTAGTTTGTAGGATTGGTAAAACATGAAGAGAAATGGG 536
                          *  **          *      * *** *   **  *    *  * *  *  *  *

consensus_9721#0      GTAACCCCTCTGGTGCTTTAAAGGTCAGACTACCTAGGGACACAAAGGATTATGTTGCTG 655
consensus_9721#2      G----------------------------------------------------------- 533
consensus_9721#1      GATATTGCTGTTGAACTATCTATACTTCTATACTATGAG---CTGGTGGTTCTGCCAACC 593
                      *                                                           

consensus_9721#0      AGCTGCTATATGAGCATCAGGGTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTG 715
consensus_9721#2      ---------------------GTTATGATCTTGCAATTATTAAAGTTAATGGAGTGAGTG 572
consensus_9721#1      ACCACCACCACCACCACTGAAATATGGGCCATGGTGTTAGTATAAGTTTCTGAGTGCTTG 653
                                            *   *  * **   *** ** *  *    *****  **

consensus_9721#0      GAGAATGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCG 775
consensus_9721#2      GAGAATGCCCAATTCTTCAATTTGGTGATTTAGAAGGTGTGGCGCATAGGGCCAATGTCG 632
consensus_9721#1      GTCA--GCTTTTTTCTGTACTTCTGTAGAATAGTTG-TGTAGTCTTTACTCTCTAGCTGG 710
                      *  *  **    ****  * **  **    ***  * *** *    **    * *  * *

consensus_9721#0      T---TCAGCTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTAT 832
consensus_9721#2      T---TCAGCTTGGATATATCCTTGGGTCACAGTTTGCTTTAAACTTGGACCCCTCAGTAT 689
consensus_9721#1      TATTTGAAGTACTATATAAACTAAAGTTC---TTTAATTTTATATTGATTTACCTTTTGT 767
                      *   * *  *   *****  **   **     ***  *** *  ***     *    * *

consensus_9721#0      C-TCCTGGATCAGTCATA--AGACCGGCAAACCAAAATGGAAT-GATGGGCAGCCAGGAT 888
consensus_9721#2      C-TCCTGGATCAGTCATA--AGACCGGCAAACCAAAATGGAAT-GATGGGCAGCCAGGAT 745
consensus_9721#1      CATCTTGATTCAACTAAAGAAAACCCACAAACTTTTTAGGTTTTAATTGTAATTTAAAAT 827
                      * ** **  ***   * *  * ***  *****      **  *  ** *  *   *  **

consensus_9721#0      GTTGTCTACAGTGC----CGCTGCAAGACATGGCGCCTCAGGATC-TGCAGTGATGTTTG 943
consensus_9721#2      GTTGTCTACAGTGC----CGCTGCAAGACATGGCGCCTCAGGATC-TGCAGTGATGTTTG 800
consensus_9721#1      GACATAGACAGCACAATTCATTGAAGAGTACA-TATTTTGTAATCATATCAAAGGACATA 886
                      *   *  ****  *    *  ** *    *       *    *** *           * 

consensus_9721#0      ATGATAAAGTTATTGGAGTACTATATTCA-ATGTCTACAAATA--GCCAAGTTGCGTA-T 999
consensus_9721#2      ATGATAAAGTTATTGGAGTACTATATTCA-ATGTCTACAAATA--GCCAAGTTGCGTA-T 856
consensus_9721#1      TTGTTAGCACAATTGGAGTCATCTATCTATACTGAAACAAACTATGCCATTTTTCTTTCT 946
                       ** **     ********  * ***  * *     *****    ****  ** * *  *

consensus_9721#0      GCTCGATCAAGTACTACTGTTCACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCT 1059
consensus_9721#2      GCTCGATCAAGTACTACTGTTCACATGGCCTTGAAGAATTGGTTGCATCCAAATGATGCT 916
consensus_9721#1      GTTTGTTAATACAAAGAAGCTAATATT-TGTTGCAACACGGATGTAATTTGTTTGTTGCT 1005
                      * * * * *   *     * * * **    *** *  *  * *   **     ** ****

consensus_9721#0      GCAATAACCACTGAGAAGATGATAGA-ACTTG--TAGTAAAACCTC------TAAATGAT 1110
consensus_9721#2      GCAATAACCACTGAGAAGATGATAGA-ACTTG--TAGTAAAACCTC------TAAATGAT 967
consensus_9721#1      GTTTTGAATCTGGTGTAACGCACAGGTATTTGGCTAGTCTATATTTATTATTTGTACCTT 1065
                      *   * *     * * *    * **  * ***  ****  *   *       *  *   *

consensus_9721#0      TCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCATGTGGACT-CAATGG 1169
consensus_9721#2      TCAGAGTTAGACGATTGATTGGACTGGCTATGGATTGCAAGGGCATGTGGACT-CAATGG 1026
consensus_9721#1      TTGAACTTGCTTGTTTCATTAG-TCGATTATTTGTTTTATAAG-ATGTTATTTGCTATAT 1123
                      *   * **    * ** *** *   *  ***   **  *   * ****    * * **  

consensus_9721#0      GTGTAGACTCTATTAATGTAATCGCCCATG-GTTGTTTGTTATTTTTATTGATGTCCTCT 1228
consensus_9721#2      GTGTAGACTCTATTAATGTAATCGCCCATG-GTTGTTTGTTATTTTTATTGATGTCCTCT 1085
consensus_9721#1      TTGTATCTCTTTTTACCAAATTTATACTTGCAATGTTCAAAAATTTTTGGCATGTAATGT 1183
                       ****     * ***    * *    * **   ****    * ****    ****  * *

consensus_9721#0      TTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTAGCTA 1288
consensus_9721#2      TTCCATGGGAATATGTTGTCTATGTAATTTTTAATGTTTGAAATTATCAATAGTTAGCTA 1145
consensus_9721#1      GAAATTGTGAAGTAG--GGCTAGTCAACCATAAATTCCTGGCTATGCCAGTCTCCGTCCG 1241
                           ** ***   *  * ***   **   * ***   **    *  ** *      *  

consensus_9721#0      GCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTA---CGGATAGTTATT-GCATG 1344
consensus_9721#2      GCTATTAGATCTTGTTCTTTTCAGCTGATGGACAGCTTA---CGGATAGTTATT-GCATG 1201
consensus_9721#1      GTTACCAGAGGA-GCTCAATCCAGTTGCTTG-CAGCTTGTATCAGGCGGTGAGCAGCTCA 1299
                      * **  ***    * **  * *** ** * * ******    * *   ** *   **   

consensus_9721#0      CTTTTAAAGCTAGAATTCCTTTCAAAAAAAAATGTTATCGTTGACAACTTTTTCTAAAAA 1404
consensus_9721#2      CTTTTAAAGCTAGAATTCCTTTCAAAAAAAAATGT------------------------- 1236
consensus_9721#1      CTCCTGTAGATCCGCTTGCTTGCAGCTTGGATCGGGCTGGGAGAAGCTTATTTTGGGACA 1359
                      **  *  ** *    ** *** **      *  *                          

consensus_9721#0      AAAAAAAAAAGA-------------------------------- 1416
consensus_9721#2      --------------------------------------------
consensus_9721#1      AACGGAAGGAGGCAAAGATGAACTTTTTATGGAACGGAGGGAGT 1403
                                                                  




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)