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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 960 fasta sequence
[TGAAGGAGTAGAAAAAAAGCCACACCCACACGTGCCGCATAGACCATCGCGGACCAAAGGAAACTGAGAGGTCGTCGTCGTCGTTTGCTCCGGGATCGAGATGACGGAGGCGGGCGGCGAGCGCAGGATCGGCGTGGCCATGGACTTCTCGCCGAGCAGCAAGAAGGCGCTGCAGTGGGCGGCCGACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACATCCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGATATACCTTCGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGACTCTGCTGGGNAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAA-GCAAAGTAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAACAATCCAATGTATATTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGTGCCGTTTCATTTGCAGCTGTATTGGAGTATGTCCGTTGAATAATCCTGGATGTCTTTGTTTGCTGTTGTAAAAAAAGCTGGAAGCCTGGAATCGTAATACATGTTGTTAGTTCTAAAAAAGTTACTGCTATCTTTAAAAGAAAGACATTAATTAGCCCAACACGGCAACACTGGCAGGTACGCTGTACATTTTATACATCTGCACTAGGCACACTGTGAAATCTGAGTTATCCTTGTTCAAAACTGCAAAAATTATACTAGTTGCTAAAAA]
[+] EMBL CF314369 [TGAAGGAGTAGAAAAAAAGCCACACCCACACGTGCCGCATAGACCATCGCGGACCAAAGGAAACTGAGAGGTCGTCGTCGTCGTTTGCTCCGGGATCGAGATGACGGAGGCGGGCGGCGAGCGCAGGATCGGCGTGGCCATGGACTTCTCGCCGAGCAGCAAGAAGGCGCTGCAGTGGGCGGCCGACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACATCCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGATATACCTTCGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGACTCTGCTGGGNAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAA GCAAAGTAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAA ]
[-] EMBL CF314076 [ GGCTGT GGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGATTCTGCTGGG AAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAACAATCCAATGTATATTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGTGCCGTTTCATTTGCAGCTGTATTGGAGTATGTCCGTTGAATAATCCTGGATGTCTTTGTTTGCTGTTGTAAAAAAAGCTGGAAGCCTGGAATCGTAATACATGTTGTTAGTTCTAAAAAAGTTACTGCTATCTTTAAAAGAAAGACATTAATTAGCCCAACACGGCAACACTGGCAGGTACGCTGTACATTTTATACATCTGCACTAGGCACACTGTGAAATCTGAGTTATCCTTGTTCAAAACTGCAAAAATTATACTAGTTGCTAAAAA]
consensusID : consensus_9726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 874 fasta sequence
[CCAGCGCAAACCCGGGGGGACGCGCACAAAGCCACACCCACACGTGCCGCATAGACCATCGCGGACCAAAGGAAACTGAGAGGTCGTCGTCGTCGTTTGCTCCGGGATCGAGATGACGGAGGCGGGCGGCGAGCGCAGGATCGGCGTGGCCATGGACTTCTCGCCGAGCAGCAAGAAGGCGCTGCAGTGGGCGGCCGACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACATCCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTAGTCTCACACCGGATCACCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGATATACCTTCGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAACAATCCAATGTATATTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGTGCTGTTTCATTTGCAGCTGTATTGGAGTATGTCCGTATAGTTGAATAATCCTGGATGTCTTTGTTTGCTGTTGTACCTGGAAGCTGGAAGCCTGGAATCGTAATACATGTTGTTAGTTCTGAACATGTTACTGCTATCTTTAAAAGAAAGACTTAATTAGCCCCAAAAAAAAAA]
[+] EMBL CF314075 [CCAGCGCAAACCCGGGGGGACGCGCACAAAGCCACACCCACACGTGCCGCATAGACCATCGCGGACCAAAGGAAACTGAGAGGTCGTCGTCGTCGTTTGCTCCGGGATCGAGATGACGGAGGCGGGCGGCGAGCGCAGGATCGGCGTGGCCATGGACTTCTCGCCGAGCAGCAAGAAGGCGCTGCAGTGGGCGGCCGACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACATCCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTAGTCTCACACCGGATCACCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGATATACCTTCGGACGAAGAGGTGTTCGACATGCTCAACGCCG ]
[+] EMBL AK108159 [ CACCCACACGTGCCGCATAGACCATCGCGGACCAAAGGAAACTGAGAGGTCGTCGTCGTCGTTTGCTCCGGGATCGAGATGACGGAGGCGGGCGGCGAGCGCAGGATCGGCGTGGCCATGGACTTCTCGCCGAGCAGCAAGAAGGCGCTGCAGTGGGCGGCCGACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACATCCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACCGCTGATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGATATACCTTCGGACGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAACAATCCAATGTATATTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGTGCTGTTTCATTTGCAGCTGTATTGGAGTATGTCCGTATAGTTGAATAATCCTGGATGTCTTTGTTTGCTGTTGTACCTGGAAGCTGGAAGCCTGGAATCGTAATACATGTTGTT ]
[+] EMBL BI801155 [ ACCTTCGGACGAAGA GTGTTCGACATGCTCAAC CCGTGTCCCGGGAGAAGGAGCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGTCTGTGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCACCCGTGGCCTCGGCCAGATCCAGAGGATTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGC TCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAACAATCC ATGTATATTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGGGCTGTTTCATTTGCAGCTGTATTGGAGTATGTCCGTATAGTTGAATAATCCTGGATGTCTTTGTTTGCTGTTGTACCTGGAAGCTGGAAGCCTGGAATCGTAATACATGTTGTTAGTTCTGAACATGTTACTGCTATCTTTAAAAGAAAGACTTAATTAGCCCCAAAAAAAAAA]
[-] EMBL CF314370 [ GTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGCTGTCCGTGGTGCTGAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGAGCTCAATCTCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGACTCTGCTGGGAAGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAGTAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAACAATCCAATGTATATTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGTGCTGTTTCATTTGCAGCTGTATTGGAGTATGTCCGTATAGTTGAATAATCCTGGATGTCTTTGTTTGCTGTTGTACCTGGAAGCTGGAAGCCTGGAATCGTAATACATGTTGTTAGTTCTGACCAaaaaaaa ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9726#0 ------------TGAAGGAGTAGAAAAAAAGCCACACCCACACGTGCCGCATAGACCATC 48
consensus_9726#1 CCAGCGCAAACCCGGGGGGACGCGCACAAAGCCACACCCACACGTGCCGCATAGACCATC 60
* ** * *********************************
consensus_9726#0 GCGGACCAAAGGAAACTGAGAGGTCGTCGTCGTCGTTTGCTCCGGGATCGAGATGACGGA 108
consensus_9726#1 GCGGACCAAAGGAAACTGAGAGGTCGTCGTCGTCGTTTGCTCCGGGATCGAGATGACGGA 120
************************************************************
consensus_9726#0 GGCGGGCGGCGAGCGCAGGATCGGCGTGGCCATGGACTTCTCGCCGAGCAGCAAGAAGGC 168
consensus_9726#1 GGCGGGCGGCGAGCGCAGGATCGGCGTGGCCATGGACTTCTCGCCGAGCAGCAAGAAGGC 180
************************************************************
consensus_9726#0 GCTGCAGTGGGCGGCCGACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACAT 228
consensus_9726#1 GCTGCAGTGGGCGGCCGACAACCTCCTCCGCAAGGGCGACACCCTCGTCCTCCTCCACAT 240
************************************************************
consensus_9726#0 CCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTGGTCTCACACCGGATCACCGCT 288
consensus_9726#1 CCGGCACCACGGCCGCGACGAGGCCAAGAACGTCCTCTAGTCTCACACCGGATCACCGCT 300
************************************** *********************
consensus_9726#0 GATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGATATACCTTCGGA 348
consensus_9726#1 GATCCCGCTCGAGGAGCTCATGGAGACGGCGGTGAGGCAGCGCTATGATATACCTTCGGA 360
************************************************************
consensus_9726#0 CGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGCTGTCCGTGGTGCT 408
consensus_9726#1 CGAAGAGGTGTTCGACATGCTCAACGCCGTGTCCCGGGAGAAGGAGCTGTCCGTGGTGCT 420
************************************************************
consensus_9726#0 GAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGGGAGCTCAATC 468
consensus_9726#1 GAAGATGTACTGGGGCGAGCCGAGGGAGAAGGTGTGCGAGGCTGTGGGGG-AGCTCAATC 479
************************************************** *********
consensus_9726#0 TCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGACTCTGCTGGGNA 528
consensus_9726#1 TCGAATCGCTCGTCATGGGCAGCCGTGGCCTCGGCCAGATCCAGAGGATTCTGCTGGGAA 539
************************************************ ********* *
consensus_9726#0 AGTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAG-CAAAG 587
consensus_9726#1 -GTGTGACTAACTACGTGCTGTCGAATGCGTCTTGCCCTGTGACCGTCGTCAAGGCAAAG 598
***************************************************** *****
consensus_9726#0 TAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAACAATCCAATGTATA 647
consensus_9726#1 TAGTCGCTACTCTTACAGCAATGCAAACCTGCATCCTGGACAGAAACAATCCAATGTATA 658
************************************************************
consensus_9726#0 TTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGTGCCGTTTCATTTGCAGCT 707
consensus_9726#1 TTGCGTGTTGTACCCTAACTTGTCACCTAATAGTACTGCAGTGCTGTTTCATTTGCAGCT 718
******************************************** ***************
consensus_9726#0 GTATTGGAGTATGTCCGT-----TGAATAATCCTGGATGTCTTTGTTTGCTGTTGTAAA- 761
consensus_9726#1 GTATTGGAGTATGTCCGTATAGTTGAATAATCCTGGATGTCTTTGTTTGCTGTTGTACCT 778
****************** **********************************
consensus_9726#0 AAAAGCTGGAAGCCTGGAATCGTAATACATGTTGTTAGTTCTAAAAAAGTTACTGCTATC 821
consensus_9726#1 GGAAGCTGGAAGCCTGGAATCGTAATACATGTTGTTAGTTCTGAACATGTTACTGCTATC 838
**************************************** ** * ************
consensus_9726#0 TTTAAAAGAAAGACATTAATTAGCCCAACACGGCAACACTGGCAGGTACGCTGTACATTT 881
consensus_9726#1 TTTAAAAGAAAGAC-TTAATTAGCCCCAAAAAAAAAA----------------------- 874
************** *********** * * **
consensus_9726#0 TATACATCTGCACTAGGCACACTGTGAAATCTGAGTTATCCTTGTTCAAAACTGCAAAAA 941
consensus_9726#1 ------------------------------------------------------------
consensus_9726#0 TTATACTAGTTGCTAAAAA 960
consensus_9726#1 -------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||