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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9733#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1412 fasta sequence
[CCTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCGACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGGGCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCGGCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAGGAGGAAGGGATCGAGGTGGCGTGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCGGCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCACATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACCGAGGTCTGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGTCAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCACGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACACCGGCCAGGTCAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTGGCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTACACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAGATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGT-CACCCGGGGCGTC--CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCC-GGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG-CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTTGGCAATGCGTGTCAAATGTGTCACAATCCTTTCAAAGGATGGTTGTAAATTAAAGGTGTGAGATTTCCATGAGCTGGATGCTGGAGTTTATA]
[+] EMBL AK072176 [CCTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCGACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGGGCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCGGCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAGGAGGAAGGGATCGAGGTGGCGTGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCGGCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCACATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACCGAGGTCTGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGTCAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCACGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACACCGGCCAGGTCAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTGGCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTACACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAGATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGT CACCCGGGGCGTC CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGTCAGCCCC GGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGAT ]
[+] EMBL AK072014 [ CTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCGACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGGGCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCGGCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAGGAGGAAGGGATCGAGGTGGCGTGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCGGCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCACATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACCGAGGTCTGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGTCAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCACGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACACCGGCCAGGTCAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTGGCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTACACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAGATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGT CACCCGGGGCGTC CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCC GGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTTGGCTTTGCGTGTCAAATGTGTCACAATCCTTTCAAAGGATGGTTGTAAATTAAAGGTGTGAGATTTCCATGAGCTGGATGCTGGAGTTTATA]
[+] EMBL AK105268 [ CTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCGACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGGGCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCGGCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAGGAGGAAGGGATCGAGGTGGCGTGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCGGCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCACATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACCGAGGTCTGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGTCAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCACGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACACCGGCCAGGTCAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTGGCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTACACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAGATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGT CACCCGGGGCGTC CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCC GGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTTGGC ]
[+] EMBL BI813283 [ cGCGTCCACCCACGCAGTCCGCCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGCATCGGCCAGCCCCAGGAACCGGCCCTCC CCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAAC AATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAGCCCAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTaaaaaa ]
[+] EMBL BI802391 [ gcCCTTCATCGAGCGCTGCATCGGCCAGCCCC GGAACC GCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCCGGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGTACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAGCTCCAGCGAGTAG CAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTGTAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCTTTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTTGGCTTaaaaaaa ]
consensusID : consensus_9733#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 716 fasta sequence
[GGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCCCTGCATCCTCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACGCCGGCCAGGTGTTCGACACGGTCATATGCCTCTTCTGCTGGATGATCTGGAAAGAAAGGAGCACAAGAGTCTTTGAAGCCTTCACCCACTAGTTACTGTAGGTCGCAGATTGCACAATTGATGAGCGGAGGACATGGAAGATGGCTGGACTAGGTGCCTAGCATAGCACAACAGATTGGTAACCTGAAGTGTAGCATTGTGCCGACGAGCCCAGGTCATCAGGCACTTTGCCTTGGTTTTATGACAGGGCTCGCTTCGCATCTCAGTCTCACGCCCGATATGCTTCATCCTCTGTGTTTTGGCTGAGCATTTACAAAGTCTATAAATTTTTACCCCCTCCCTCCTTAATACAAGTTCGGTCGGCATTCTTTGTCAGCCCAGCGAAAAAAATAGTTTTGTTGGAGTCTTTGTGGTTGTATTTCGTACCAATACTTGTTCTTGCATCTCTTTGTACTAATTGTAGNGCCACCTCAAATTTTATAGTACTTGGCATGCTATTTAATGCTATGAACTCTCAAGTGAGGTGAAATGTTAACTGAACAAGTAATAAATATCGATTGGTGG]
[+] EMBL CA766731 [GGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTACGCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCCCTGCATCCTCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACGCCGGCCAGGTGTTCGACACGGTCATATGCCTCTTCTGCTGGATGATCTGGAAAGAAAGGAGCACAAGAGTCTTTGAAGCCTTCACCCACTAGTTACTGTAGGTCGCAGATTGCACAATTGATGAGCGGAGGACATGGAAGATGGCTGGACTAGGTGCCTAGCATAGCACAACAGATTGGTAACCTGAAGTGTAGCATTGTGCCGACGAGCCCAGGTCATCAGGCACTTTGCCTTGGTTTTATGACAGGGCTCGCTTCGCATCTCAGTCTCACGCCCGATATGCTTCATCCTCTGTGTTTTGGCTGAGCATTTACAAAGTCTATAAATTTTTACCCCCTCCCTCCTTAATACAAGTTCGGTCGGCATTCTTTGTCAGCCCAGCGAAAAAAATAGTTTTGTTGGAGTCTTTGTGGTTGTATTTCGTACCAATACTTGTTCTTGCATCTCTTTGTACTAATTGTAGNGCCACCTCAAATTTTATAGTACTTGGCATGCTATTTAATGCTATGAACTCTCAAGTGAGGTGAAATGTTAACTGAACAAGTAATAAATATCGATTGGTGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9733#0 CCTCGCCCCACTTTCCCCGCCTCGGGTCGCGCCGCCGCGTCCCCGCCGCGCCGCGACGCG 60
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 ACGCAACGCATGCCCCCCAACCCGACTCCGCCGCGGCGCGCGACGACGACGACGACGAGG 120
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 GCGACCAGCGGCGTCCGCCGGGGGGAGGAGGAGCAGGGGGGCATGGCGGTGTCGGCGTCG 180
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 GCGGGGGAGGAGGAGGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTAC 240
consensus_9733#1 --------------GGAGGCGTTCGAGGAGGTGGACCCGACGGGGCGGTTCGGGCGGTAC 46
**********************************************
consensus_9733#0 GCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCAG-GAGGA 299
consensus_9733#1 GCCGACGTGCTCGGCCTCGGCTCCGTGAAGAAGGTGTACCGCGGGTTCGACCCCTGCATC 106
**************************************************** *
consensus_9733#0 AGGGATCGAGGTGGCG--TGGAACCGCGTGCGGCTGCGCGCGCTCGCCGACCGCGACCCG 357
consensus_9733#1 CTCCACCGCGACCTCAACTGCAGCAACGTCTTCATCAACGGCAACGCCGGCCAGGTGTTC 166
* ** * * ** * * *** * ** ***** ** *
consensus_9733#0 GCCATGGTGGAGCGCCTCCACGCCGAGGTGCGCCTCCTCCGCTCCCTCCACCACGAGCAC 417
consensus_9733#1 GACACGGTCATATGCCTCTTCTGCTGGATG----ATCTGGAAAGAAAGGAGCACAAGAGT 222
* ** *** ***** * * * ** ** * *** **
consensus_9733#0 ATCATCGGCTTCCACAAGGTCTGGCTCGACCGCGACGCCGGCGTGCTCAACTTCATCACC 477
consensus_9733#1 CTTTGAAGCCTTCACCCA--CTAGTTACTGTAGGTCGCAGAT-TGCACAATTGATGAGCG 279
* ** * *** ** * * * *** * *** *** * *
consensus_9733#0 GAGGTC-TGCACCTCCGGCAGCCTCCGCGAGTACCGCGACCGCCACCGCCACGTCTCCGT 536
consensus_9733#1 GAGGACATGGAAGATGGCTGGACTAGGTGCCTAGCATAGC-ACAACAGATTGGTAACC-T 337
**** * ** * * * ** * * ** * * * ** * ** ** *
consensus_9733#0 CAAGGCGCTCAAGAAGTGGGCGCGCCAGATCCTCCTCGGACTCGACCACCTCCACACCCA 596
consensus_9733#1 GAAGTGTAGCATTGTGCCGACGAGCCCAGGTCATCAGGCACTTTGCCTTGGTTTTATG-A 396
*** ** * * ** *** * * * *** ** * *
consensus_9733#0 CGACCCCTGCATCATCCACCGCGACCTCAACTGCAGCA-ACGTCTTCATCAACGGCAACA 655
consensus_9733#1 CAGGGCTCGCTTCG--CATCTCAGTCTCACGCCCGATATGCTTCATCCTCTGTGTTTTGG 454
* * ** ** ** * * **** * * * ** ** ** *
consensus_9733#0 CCGGCCAGGT-CAAGATCGGGGACCTCGGGCTGGCGGCGATCGTGGACAAGACCCACGTG 714
consensus_9733#1 CTGAGCATTTACAAAGTCTATAAATTTTTACCCCCTCCCTCCTTAATACAAGTTCGGTCG 514
* * ** * *** ** * * * * * * * * * *
consensus_9733#0 GCGCACACGATCCTGGGCACGCCGGAGTTCATGGCGCCGGAGCTGTACACGGAGACGTAC 774
consensus_9733#1 GCATTCTTTGTC---AGCCCAGCGAAAAAAATAGTTTTGTTGGAGTCTTTGTGGTTGTAT 571
** * ** ** * ** * ** * * * ** * * ***
consensus_9733#0 ACGGAGTCGGTGGACATCTACTCGTACGGGATGTGCGTGCTGGAGATGGTGACGCGGGAG 834
consensus_9733#1 TTCGTACCAAT--ACTTGTTCTTGCATC---TCTTTGTACTAATTGTAGNGCCACCTCAA 626
* * * ** * * ** * * * * ** ** * * * * * *
consensus_9733#0 ATGCCCTACGCCGAGTGCGACAGCGTCGTGCAGATCTACCACAGCGTCACCCGGGGCGTC 894
consensus_9733#1 ATTTTATA----GTACTTGGCA-TGCTATTTAATGCTATGA-ACTCTCAAGTGAGGTGAA 680
** ** * * ** * * * *** * * *** * ** *
consensus_9733#0 CCCCCCGCCGCGCTCAAGCGCATCAGGGACCCCGAGCTCCGCGCCTTCATCGAGCGCTGC 954
consensus_9733#1 ATGTTAACTG------AACAAGTAATAAATATCGATTGGTGG------------------ 716
* * * * * * * *** *
consensus_9733#0 ATCGGCCAGCCCCGGAACCGGCCCTCCGCCGCCGAGCTCCTCCGCGACCCCTTCTTCGCC 1014
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 GGCATCGACGACGACGATAGCACCGGCACGCTCGGCTAGCCTGTTAACCAGCTGGGTAGT 1074
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 ACTAGAAATTATTGTATGTGAATTCGATTGGAAACAAATAAACGTTCTAAACGAATTAAG 1134
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 CTCCAGCGAGTAGCAAATGTTTATAGGTTCATGTCTCACCGGCGCTCGAGCTGTAGCCTG 1194
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 TAGCTTTGGATGTGGTTAATTAGTGGCTAGTACTGTAGTATTTATTGTACTGTTTGTTCT 1254
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 TTGGTTTGTACTGATTTGATTCATGAGCTTCAAAGAAATGGAAGATGAGGAGCTGTATTT 1314
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 GGCTTTGGCAATGCGTGTCAAATGTGTCACAATCCTTTCAAAGGATGGTTGTAAATTAAA 1374
consensus_9733#1 ------------------------------------------------------------
consensus_9733#0 GGTGTGAGATTTCCATGAGCTGGATGCTGGAGTTTATA 1412
consensus_9733#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||