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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9734#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 873 fasta sequence
[CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAGAGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTTGAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC-AAC-AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC]
[+] EMBL AK069687 [CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAGAGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTTGAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCTCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGT ]
[-] EMBL CA763637 [ TCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCAATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGT ATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGGTTACCAAGAAATTTCACAAAAA ]
[+] EMBL BI807351 [ GCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGC AAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC ATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC AATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTTTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGGTACTATCAAGTGTTAGTAGTGATTACCAAGAAAaaa ]
[+] EMBL CA758113 [ CAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCAGACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGC AAC AAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTATTGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC]
[+] EMBL BI802412 [ TATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAAACAAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACTATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAA ]
consensusID : consensus_9734#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 695 fasta sequence
[CGGGACCAGCTGAGGATTTGAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAAAAAAAGAAAAAAAAAA]
[-] EMBL CA758990 [CGGGACCAGCTGAGGATTTGAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGTCACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTGGCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGGTCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCTCTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAAAATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTACAATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTGGTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTTGCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGTCATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAGGAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAAAAAAAGAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9734#0 CCCACAAAGGCACAAACCGCGTCTCCCTCTCCCTCTCTCCGCCCATCCATCCTCCTAGAG 60
consensus_9734#1 ------------------------------------------------------------
consensus_9734#0 AGGGAGCGCGCGCAAGGAGGAGGAACAAGGGCTCCTCGGATCGGGACCAGCTGAGGATTT 120
consensus_9734#1 -----------------------------------------CGGGACCAGCTGAGGATTT 19
*******************
consensus_9734#0 GAACAAGTCAGCTTGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGT 180
consensus_9734#1 GAACAAGTCAGCTNGTCGCCACCATGGTTCTTGATTCATTATCATCTCCTCACAGGAGGT 79
************* **********************************************
consensus_9734#0 CACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTG 240
consensus_9734#1 CACAGAACACATTTTTTCTATCATCCCCAAAGAAGCTTCAATCATCGAAGGATGATGTTG 139
************************************************************
consensus_9734#0 GCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGG 300
consensus_9734#1 GCAGTTGGTCTGCACTGGTTGAGCGGCATCGCTTCCTCTTGACAACACTAGTGGTTCTGG 199
************************************************************
consensus_9734#0 TCTTTCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCT 360
consensus_9734#1 TCTTCCTGTGCACCATCTATCTGTACTTTGCAGTTACCTTGGGGGCACCTGATGCTTGCT 259
**** *******************************************************
consensus_9734#0 CTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAA 420
consensus_9734#1 CTGGATTAGCGGGCACTGAAAAGGCTGTATGTCGGGCAAAATCTGCTCTTCGACATGGAA 319
************************************************************
consensus_9734#0 AATTGAAATTTTTCTAGCGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC 480
consensus_9734#1 AATTGAAATTTTTCTAGTGCTGTCGTGCATACTCTCGAAGACCAAGTTACTGAGGCTTAC 379
***************** ******************************************
consensus_9734#0 AATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTG 540
consensus_9734#1 AATGCGCCCTTCAGGTCACCCACAGCTTATTCTTCATACATTGAATCTGTATATTTTGTG 439
************************************************************
consensus_9734#0 GTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTT 600
consensus_9734#1 GTGGATGTATTGCTTTGTATTCATGTTGTACTTTGTTGAGAGACCTGCTATTCAATAGTT 499
************************************************************
consensus_9734#0 GCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGT 660
consensus_9734#1 GCAACAAATCTGCTAGTGATAGAGAGAATTTATATGTTGTGTAAACGGTACAAGGTAGGT 559
************************************************************
consensus_9734#0 CATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAG 720
consensus_9734#1 CATCATATTATTTTTTGTCATGGTGTACTAAAAACACCATGCCATTACTAATCCATCCAG 619
************************************************************
consensus_9734#0 GAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATACT 780
consensus_9734#1 GAGACCCTGATACTGTCTCCATCCTGGCATACTGTAATTCATTTGAAACTGCATGATAAA 679
**********************************************************
consensus_9734#0 ATCAAGTGTTAGTAGTGATTACCAAGAAATTTCACAAAAAAAAAAAAAAAAAAAAAAAAA 840
consensus_9734#1 AAAAAGAAAAAAAAAA-------------------------------------------- 695
* *** * *
consensus_9734#0 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAC 873
consensus_9734#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||