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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9737#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1532 fasta sequence
[CGCCACCCCGGCGATCTCCGTCGACCCACCCGCCCGCCGCCACCGCGGATCTCGCTCGGTTTCGCCGACCCTGACGGGGAACCAACCAGAGCTATAAGACGCGCCCCTCCCCCCTCTCGCTCTCGATCGAGTCCGCGGGCGTGGTTCTGTTCTCCGATTCCTTCCCAGGATGGCTGCTTCCACGTCCCAGCATGCGCTCGTATCCGTCAAGTCGTTGTGCACCGGTGCCAACTTTGGTTTCGAAAAGAGAACCAGCAAAGTGCGTTTTGTTTTGGTTGGGAGGTGCTGCTCGGGCACCCGGAAATTGGGTTTGGTATGCGCTTCAAACTCACATTCTTCGGTGATGGAGCCGGCTCAGCTACCATTGAGCCCCGAGAGCGGAAACACCCCAAAGAAATCAAGTGAAAGTGCGCTCATATTGATCCGGCATGGTGAATCGCTATGGAATGAGAAAAATCTATTTACTGGCTGCGTCGATGTGCCCCTGACCCCAAAGGGTGTTGACGAGGCAATTGAGGCGGGTAAAAGGATATGCAATATCCCAGTTGATGTAATATACACCTCGTCACTAATTCGTGCTCAGATGACCGCTATGCTTGCCATGATGCAGCATCGTCGTAAGAAGGTTCCAATTGTTGTGCACAGTGAGAGCGAACAAGCTCACAGGTGGAGCAAGATATACAGTGAAGAGACAAAGAAGCAATCAATTCCTGTCATAACAGCTTGGCAGCTGAATGAACGAATGTATGGGGAACTACAAGGCCTTAACAAGCAAGAAACTGCTGATCGTTTTGGCAAAGAACAAGTTCATGAATGGCGTCGCAGTTACGACATTCCTCCCCCAAATGGCGAGAGCCTAGAGATGTGTGCAGAGAGAGCAGTTGCTTATTTTAAAGATCAAATTGTACCTCAGCTTGTGGCAGGAAAGCATGTGATGATTGCTGCCCATGGCAATTCACTTCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGGTTATCAGCCTTGAACTGTCTACTGGCATTCCTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAGTCCGGCAGGCCCTTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTC-TTTTTCGTTTCGTTTGA-AA-CCATGCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACAAACGGGGATGAA-TTTACA-TCACCA-TTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAAAAGTGTGTGAGCTATTCTGCCTTTTATACTTCTCCTGGCGAGCG]
[+] EMBL AK101802 [CGCCACCCCGGCGATCTCCGTCGACCCACCCGCCCGCCGCCACCGCGGATCTCGCTCGGTTTCGCCGACCCTGACGGGGAACCAACCAGAGCTATAAGACGCGCCCCTCCCCCCTCTCGCTCTCGATCGAGTCCGCGGGCGTGGTTCTGTTCTCCGATTCCTTCCCAGGATGGCTGCTTCCACGTCCCAGCATGCGCTCGTATCCGTCAAGTCGTTGTGCACCGGTGCCAACTTTGGTTTCGAAAAGAGAACCAGCAAAGTGCGTTTTGTTTTGGTTGGGAGGTGCTGCTCGGGCACCCGGAAATTGGGTTTGGTATGCGCTTCAAACTCACATTCTTCGGTGATGGAGCCGGCTCAGCTACCATTGAGCCCCGAGAGCGGAAACACCCCAAAGAAATCAAGTGAAAGTGCGCTCATATTGATCCGGCATGGTGAATCGCTATGGAATGAGAAAAATCTATTTACTGGCTGCGTCGATGTGCCCCTGACCCCAAAGGGTGTTGACGAGGCAATTGAGGCGGGTAAAAGGATATGCAATATCCCAGTTGATGTAATATACACCTCGTCACTAATTCGTGCTCAGATGACCGCTATGCTTGCCATGATGCAGCATCGTCGTAAGAAGGTTCCAATTGTTGTGCACAGTGAGAGCGAACAAGCTCACAGGTGGAGCAAGATATACAGTGAAGAGACAAAGAAGCAATCAATTCCTGTCATAACAGCTTGGCAGCTGAATGAACGAATGTATGGGGAACTACAAGGCCTTAACAAGCAAGAAACTGCTGATCGTTTTGGCAAAGAACAAGTTCATGAATGGCGTCGCAGTTACGACATTCCTCCCCCAAATGGCGAGAGCCTAGAGATGTGTGCAGAGAGAGCAGTTGCTTATTTTAAAGATCAAATTGTACCTCAGCTTGTGGCAGGAAAGCATGTGATGATTGCTGCCCATGGCAATTCACTTCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGGTTATCAGCCTTGAACTGTCTACTGGCATTCCTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAGTCCGGCAGGCCCTTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTC TTTTTCGTTTCGTTTGA AA CCATGCAGCATGTAACATGGATGTCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACAAACGGGGATGAA TTTACA TCACCA TTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAATTGTGTGTGAGCTATTCTGCCTTTTATACTTCTCCTGGCGAGCG]
[+] EMBL CB619775 [ CCACCCCCTCGAAGCCACCGCGGATCTCGCTCGGTTTCGCCGACCCTGACGGGGAACCAACCAGAG GCGCCCCTCCCCCCTCTCGCTCTCGATCGAGTCCGCGGGCGTGGTGCTGTTCTCCGATTCCTTCCCAGGATGGCTGCTTCCACGTCCCAGCATGCGCTCGTATCCGTCAAGTCGTTGTGCACCGGTGCCAACTTTGGTTTCGAAAAGAGAACCAGCAAAGTGCGTTTTGTTTTGGTTGGGAGGTGCTGCTCGGGCACCCGGAAATTGGGTTTGGTATGCGCTTCAAACTCACATTCTTCGGTGATGGAGCCGGCTCAGCTACCATTGAGCCCCGAGAGCGGAAACACCCCAAAGAAATCAAGTGAAAGTGCGCTCATATTGATCCGGCATGGTGAATCGCTATGGAATGAGAAAAATCTATTTACTGGCTGCGTCGATGTGCCCCTGACCCCAAAGGGTGTTGACGAGGCAATTGAGGCGGGTAAAAGGATATGCAATATCCCAGTTGATGTAATATACACCTCGTCACTAATTCGTGCTCAGATGACCGCTATGCTTGCCATGATGCAGCATCGTCGTAAGAAGGTTCCAATTGTTGTGCACAGTGAGAGCGAACAAGCTCACAGGTGGAGCAAGATATACAGTGAAGAGACAAAGAAGCAATCAATTCCTGTCATAACAGCTTGGCAGCTGAATGAACGAATGTATGGGGAACTACAAGGCCTTAACAAGCAAGA ]
[-] EMBL CB619776 [ CAAATGGCGAGAGCCTAGAGATGTGTGCAGAGAGAGCAGTTGCTTATTTTAAAGATCAAATTGTACCTCAGCTTGTGGCAGGAAAGCATGTGATGATTGCTGCCCATGGCAATTCACTTCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGGTTATCAGCCTTGAACTGTCTACTGGCATTCCTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAGTCCGGCAGGCCCTTCTGAGGCAGGTGTTTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATAAAAAAAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTC TTTTTCGTTTCGTTTGA AA CCATGCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACAAACGGGGATGAA TTTACA TCACCA TTATGGTGTCGTTTTGTGGCTCACCATTCATAAGATGTTGGGATAACAGAAATTTGTAAT ]
[+] EMBL BI804190 [ CTTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTCTTTTTTCGTTTCGTTTGA AACCCATGCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACCAACGGGGATGAA TTTACA TCACCACTTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACCAAAAa ]
[+] EMBL BI804318 [ TTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAGACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGAATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCATACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTCTTTTTTCGTTTCGTTTGACAA CCATGCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGATACAAACGGGGATGAAGTTTACAGTCACCA TGGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAAAA ]
consensusID : consensus_9737#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 151 fasta sequence
[AGACAAGGGGGATGAATTTACATCACCATTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAGTTGTGTGTGAGCTATTCTGCCTTTAAAAAAAAAAAAAAAAAAA]
[-] EMBL CA761165 [AGACAAGGGGGATGAATTTACATCACCATTGTGTTCTCGTTTTGTGGCTCACCATTCATAAGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAGTTGTGTGTGAGCTATTCTGCCTTTAAAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9737#0 CGCCACCCCGGCGATCTCCGTCGACCCACCCGCCCGCCGCCACCGCGGATCTCGCTCGGT 60
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 TTCGCCGACCCTGACGGGGAACCAACCAGAGCTATAAGACGCGCCCCTCCCCCCTCTCGC 120
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 TCTCGATCGAGTCCGCGGGCGTGGTTCTGTTCTCCGATTCCTTCCCAGGATGGCTGCTTC 180
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 CACGTCCCAGCATGCGCTCGTATCCGTCAAGTCGTTGTGCACCGGTGCCAACTTTGGTTT 240
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 CGAAAAGAGAACCAGCAAAGTGCGTTTTGTTTTGGTTGGGAGGTGCTGCTCGGGCACCCG 300
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 GAAATTGGGTTTGGTATGCGCTTCAAACTCACATTCTTCGGTGATGGAGCCGGCTCAGCT 360
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 ACCATTGAGCCCCGAGAGCGGAAACACCCCAAAGAAATCAAGTGAAAGTGCGCTCATATT 420
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 GATCCGGCATGGTGAATCGCTATGGAATGAGAAAAATCTATTTACTGGCTGCGTCGATGT 480
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 GCCCCTGACCCCAAAGGGTGTTGACGAGGCAATTGAGGCGGGTAAAAGGATATGCAATAT 540
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 CCCAGTTGATGTAATATACACCTCGTCACTAATTCGTGCTCAGATGACCGCTATGCTTGC 600
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 CATGATGCAGCATCGTCGTAAGAAGGTTCCAATTGTTGTGCACAGTGAGAGCGAACAAGC 660
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 TCACAGGTGGAGCAAGATATACAGTGAAGAGACAAAGAAGCAATCAATTCCTGTCATAAC 720
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 AGCTTGGCAGCTGAATGAACGAATGTATGGGGAACTACAAGGCCTTAACAAGCAAGAAAC 780
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 TGCTGATCGTTTTGGCAAAGAACAAGTTCATGAATGGCGTCGCAGTTACGACATTCCTCC 840
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 CCCAAATGGCGAGAGCCTAGAGATGTGTGCAGAGAGAGCAGTTGCTTATTTTAAAGATCA 900
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 AATTGTACCTCAGCTTGTGGCAGGAAAGCATGTGATGATTGCTGCCCATGGCAATTCACT 960
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 TCGTTCAATTATAATGCACTTAGACAAGTTGACTTCTCAAGAGGTTATCAGCCTTGAACT 1020
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 GTCTACTGGCATTCCTATGCTGTATATATTTAAGGAAGGAAAATTTATTAGACGGGGGAG 1080
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 TCCGGCAGGCCCTTCTGAGGCAGGTGTCTATGCCTACACCAGGAGCTTGGCTCAGTACAG 1140
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 ACAGAAGCTTGACAACATGTTTCAGTAACCATCTGCTCTGTTTCCACCAGCATCTGAGGA 1200
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 ATTTTCATCCGTCGAACATACAGTTTATCCCCCCATCTGCCACAAAGAAGTGGCTAAGCA 1260
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 TACTATTCAGTATGGGCTGCAGTTTGTAGCATCCTTCTTTTTCGTTTCGTTTGAAACCAT 1320
consensus_9737#1 ------------------------------------------------------------
consensus_9737#0 GCAGCATGTAACATGGATATCTAGAGACTTTAGGGACAAATTAGGTGATGACCTAGAAGA 1380
consensus_9737#1 -----------------------------------------------------------A 1
*
consensus_9737#0 TACAAACGGGGATGAATTTACATCACCATTGTGTTCTCGTTTTGTGGCTCACCATTCATA 1440
consensus_9737#1 GACAAG-GGGGATGAATTTACATCACCATTGTGTTCTCGTTTTGTGGCTCACCATTCATA 60
**** *****************************************************
consensus_9737#0 AGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAAAAGTGTGTGAGC 1500
consensus_9737#1 AGATGTTGCGATAACAGAAATTTGTAATGGATTCATATACTGGACAAGTTGTGTGTGAGC 120
*********************************************** **********
consensus_9737#0 TATTCTGCCTTTTATACTTCTCCTGGCGAGCG 1532
consensus_9737#1 TATTCTGCCTTTAAAAAAAAAAAAAAAAAAA- 151
************ * * *
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||