These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1141 fasta sequence [AAGCAGCAGCAGCAGATTCGTCCGCGTCGCTCTGTCTGACAGTGTGGGCCCTCCCCGAGATGCAGGCGTGGTTCTCCGGCACGGGGCCCTCCGCCTCGTCGGCGTCGTCGTCGTCGTCGCCGCCGCAGCCGTCGCTGCTCGCGGAATGGAACTCCTACGCCGCCGCGCGCTCCGCGGAGGAGGAGGAGGACGGCGGCGGGGGAGGCTTCGGGATCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACCGCGTCTCCGGCACCTTCGGCGTGGTATCTAAAGGTGTTCTAGGGTTGCCAGGCAGCTTCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCCTTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCATGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTGGATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCACTTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCCATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTGCTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATATGTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCAGGAAAATGGAAATCTATCGAGATTCGAGAGTCAATAGTTTGTGAAATTTGGAACACTTGCACTGTAACTTACCTTCAATCTTGCATTGGGGGATTTCCCTTTTTTGACTTTAATCTGCCCATCTGCCTTACTACTCTTCAGATATTTGTTTTTATATTGAAGTCCCAATTTATGTGAATAT] [+] EMBL AK061418 [AAGCAGCAGCAGCAGATTCGTCCGCGTCGCTCTGTCTGACAGTGTGGGCCCTCCCCGAGATGCAGGCGTGGTTCTCCGGCACGGGGCCCTCCGCCTCGTCGGCGTCGTCGTCGTCGTCGCCGCCGCAGCCGTCGCTGCTCGCGGAATGGAACTCCTACGCCGCCGCGCGCTCCGCGGAGGAGGAGGAGGACGGCGGCGGGGGAGGCTTCGGGATCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACCGCGTCTCCGGCACCTTCGGCGTGGTATCTAAAGGTGTTCTAGGGTTGCCAGGCAGCTTCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCCTTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCATGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTGGATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCACTTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCCATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTGCTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATATGTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCAGGAAAATGGAAATCTATCGAGATTCGAGAGTCAATAGTTTGTGAAATTTGGAACACTTGCACTGTAACTTACCTTCAATCTTGCATTGGGGGATTTCCCTTTTTTGACTTTAATCTGCCCATCTGCCTTACTACTCTTCAGATATTTGTTTTTATATTGAAGTCCCAATTTATGTGAATAT] [+] EMBL AK104440 [ TCTGACAGTGTGGGCCCTCCCCGAGATGCAGGCGTGGTTCTCCGGCACGGGGCCCTCCGCCTCGTCGGCGTCGTCGTCGTCGTCGCCGCCGCAGCCGTCGCTGCTCGCGGAATGGAACTCCTACGCCGCCGCGCGCTCCGCGGAGGAGGAGGAGGACGGCGGCGGGGGAGGCTTCGGGATCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACCGCGTCTCCGGCACCTTCGGCGTGGTATCTAAAGGTGTTCTAGGGTTGCCAGGCAGCTTCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCCTTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCATGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTGGATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCACTTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCCATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTGCTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATATGTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCAGGAAAATGGAAATCTATCGAGATTCGAGAGTCAATAGTTTGTGAAATTTGGAACACTTGCACTGTAACTTACCTTCAATCTTGCATTGGGGGATTTCCCTTTTTTGACTTTAATCTGCCCATCTGCCTT ] [-] EMBL CA999344 [ TCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCCTTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCATGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTGGATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCACTTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCCATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTGCTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATATGTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCAGGAAAAT ] consensusID : consensus_9739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence [CCGGCGAGTCGCAGCCGTCCCTCCTCGCCGACTGGAACTCCTACGCCGCCTCCCGCCCCGACGCCTCCTCCTCCTCCCCTCTCCCTTTCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACACCGTCTCCGGCACCTTCAGCGTGGTGACCAAGGGCGTGCGGGAGCTGCCGGGGAGCTTCCAGAGCGCGACGAGCAGCTTCCCGTCGGGGAAGGCGCTCATGTACTTCGGACTCTTCCTCGCCACCGGCATCTTCTTCGTCTTCATCGCGTTCGCGCTCTTCCTCCCCGTCATGGTGATCATGCCGCAGAAGTTCGCCATCTGCTTCACGCTCGGCTGCGGGCTCATCATCGCATCCATCTTCGCGCTCAAAGGACCCGCCAGCCAGTTCGCCCACATGACCTCCATGGAGAGGCTACCATTTACAGGGGCACTTATTGGATGCATGGTTGGTACCATTTATGTGTCAATGTTTCTTCACAGCTATTTCCTCTCAGTGATATTCTCTGTCCTTCAGGTTCTATCTCTTGCTTACTACACCATATCCTACTTTCCTGGGGGTTCCAGTGGATTGAAATTTATCTCCTCGAGTCTCTTGTCATCAGTAACGAGCTGTTTTGGCCGGTAACCTGAGTAGGATGACAACTACTTGATCATATATCCTTCATTTTTCTTGCAATATTTTTGTATGTAGCACTGATCAACGATAGAGAGATTGTGACACCCCTCCTACTCATGCTTGTTGCTGTTTAGACTAAGATCAATACGGGGTGAAAAGGTTTGTCGTACTTATGTATCTGAAGGTC---------ATATTGTGGAAATAAAGCTGTCCTTTCCTTGTGTAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK109425 [CCGGCGAGTCGCAGCCGTCCCTCCTCGCCGACTGGAACTCCTACGCCGCCTCCCGCCCCGACGCCTCCTCCTCCTCCCCTCTCCCTTTCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACACCGTCTCCGGCACCTTCAGCGTGGTGACCAAGGGCGTGCGGGAGCTGCCGGGGAGCTTCCAGAGCGCGACGAGCAGCTTCCCGTCGGGGAAGGCGCTCATGTACTTCGGACTCTTCCTCGCCACCGGCATCTTCTTCGTCTTCATCGCGTTCGCGCTCTTCCTCCCCGTCATGGTGATCATGCCGCAGAAGTTCGCCATCTGCTTCACGCTCGGCTGCGGGCTCATCATCGCATCCATCTTCGCGCTCAAAGGACCCGCCAGCCAGTTCGCCCACATGACCTCCATGGAGAGGCTACCATTTACAGGGGCACTTATTGGATGCATGGTTGGTACCATTTATGTGTCAATGTTTCTTCACAGCTATTTCCTCTCAGTGATATTCTCTGTCCTTCAGGTTCTATCTCTTGCTTACTACACCATATCCTACTTTCCTGGGGGTTCCAGTGGATTGAAATTTATCTCCTCGAGTCTCTTGTCATCAGTAACGAGCTGTTTTGGCCGGTAACCTGAGTAGGATGACAACTACTTGATCATATATCCTTCATTTTTCTTGCAATATTTTTGTATGTAGCACTGATCAACGATAGAGAGATTGTGACACCCCTCCTACTCATGCTTGTTGCTGTTTAGACTAAGATCAATACGGGGTGAAAAGGTTTGTCGTACTTATGTATCTGAAGGTC ATATTGTGGAAATAAAGCTGTCCTTTCCTTGTGTAAAAAAAAAAAAAAAAAAAAGGCCACAT] [+] EMBL AK068813 [CCGGCGAGTCGCAGCCGTCCCTCCTCGCCGACTGGAACTCCTACGCCGCCTCCCGCCCCGACGCCTCCTCCTCCTCCCCTCTCCCTTTCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACACCGTCTCCGGCACCTTCAGCGTGGTGACCAAGGGCGTGCGGGAGCTGCCGGGGAGCTTCCAGAGCGCGACGAGCAGCTTCCCGTCGGGGAAGGCGCTCATGTACTTCGGACTCTTCCTCGCCACCGGCATCTTCTTCGTCTTCATCGCGTTCGCGCTCTTCCTCCCCGTCATGGTGATCATGCCGCAGAAGTTCGCCATCTGCTTCACGCTCGGCTGCGGGCTCATCATCGCATCCATCTTCGCGCTCAAAGGACCCGCCAGCCAGTTCGCCCACATGACCTCCATGGAGAGGCTACCATTTACAGGGGCACTTATTGGATGCATGGTTGGTACCATTTATGTGTCAATGTTTCTTCACAGCTATTTCCTCTCAGTGATATTCTCTGTCCTTCAGGTTCTATCTCTTGCTTACTACACCATATCCTACTTTCCTGGGGGTTCCAGTGGATTGAAATTTATCTCCTCGAGTCTCTTGTCATCAGTAACGAGCTGTTTTGGCCGGTAACCTGAGTAGGATGACAACTACTTGATCATATATCCTTCATTTTTCTTGCAATATTTTTGTATGTAGCACTGATCAACGATAGAGAGATTGTGACACCCCTCCTACTCATGCTTGTTGCTGTTTAGACTAAGATCAATACGGGGTGAAAAGGTTTGTCGTACTTATGTATCTGAAGGTC ATATTGTGGAAATAAAGCTGTCCT ] [+] EMBL BI804667 [ AGAGATTGTGACACCCCTCCTACTCATGCTTGTTGCTGTTTAGACTAAGATC ATACGGGGTGAAAAGGTTTGTCGTACTTATGTATCTGAAGGTCCTTGCGATTATATTGTGGAAATAAAGCTGTCCTTTCCTTGTGTAAAAAA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9739#0 AAGCAGCAGCAGCAGATTCGTCCGCGTCGCTCTGTCTGACAGTGTGGGCCCTCCCCGAGA 60 consensus_9739#1 ------------------------------------------------------------ consensus_9739#0 TGCAGGCGTGGTTCTCCGGCACGGGGCCCTCCGCCTCGTCGGCGTCGTCGTCGTCGTCGC 120 consensus_9739#1 -----------------------------------------------------CCGGCGA 7 ** ** consensus_9739#0 CGCCGCAGCCGTCGCTGCTCGCGGAATGGAACTCCTACGCCGCCGCGCGCTCCGCGGAGG 180 consensus_9739#1 -GTCGCAGCCGTCCCTCCTCGCCGACTGGAACTCCTACGCCGCCTCCCGCCCCG------ 60 * ********** ** ***** ** ****************** * *** *** consensus_9739#0 AGGAGGAGGACGGCGGCGGGGGAGGCTTCGGGATCGACATCGAGGCCGCCGTCCGCTCCG 240 consensus_9739#1 ------ACGCCTCCTCCTCCTCCCCTCTCCCTTTCGACATCGAGGCCGCCGTCCGCTCCG 114 * * * * * ** *************************** consensus_9739#0 CCAACGACCGCGTCTCCGGCACCTTCGGCGTGGTATCTAAAGGTGTTCTAGGGTTGCCAG 300 consensus_9739#1 CCAACGACACCGTCTCCGGCACCTTCAGCGTGGTGACCAAGGGCGTGCGGGAGCTGCCGG 174 ******** **************** ******* * ** ** ** * * * **** * consensus_9739#0 GCAGCTTCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCC 360 consensus_9739#1 GGAGCTTCCAGAGCGCGACGAGCAGCTTCCCGTCGGGGAAGGCGCTCATGTACTTCGGAC 234 * ****** ** * * ** ***** * ** *** * ** * ** **** ** ** * consensus_9739#0 TTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCA 420 consensus_9739#1 TCTTCCTCGCCACCGGCATCTTCTTCGTCTTCATCGCGTTCGCGCTCTTCCTCCCCGTCA 294 * ** ** ** * ** ** *** * ** ***** ****** ** * ** ** ** **** consensus_9739#0 TGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTG 480 consensus_9739#1 TGGTGATCATGCCGCAGAAGTTCGCCATCTGCTTCACGCTCGGCTGCGGGCTCATCATCG 354 **** ******** ** ***** ******** ****** ** **** **** ** * consensus_9739#0 GATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGA 540 consensus_9739#1 CATCCATCTTCGCGCTCAAAGGACCCGCCAGCCAGTTCGCCCACATGACCTCCATGGAGA 414 *** **** ***** ***** ** * *** ** ** **** **** **** consensus_9739#0 GGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGG 600 consensus_9739#1 GGCTACCATTTACAGGGGCACTTATTGGATGCATGGTTGGTACCATTTATGTGTCAATGT 474 ** **** ** ** ** * ** * ** ****** ** ****** ** ********* consensus_9739#0 TGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCAT 660 consensus_9739#1 TTCTTCACAGCTATTTCCTCTCAGTGATATTCTCTGTCCTTCAGGTTCTATCTCTTGCTT 534 * ** ** ***** * ** ***** * ****** ******** ** * ** ** * consensus_9739#0 ATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCAC 720 consensus_9739#1 ACTACACCATATCCTACTTTCCTGGGGGTTCCAGTGGATTGAAATTTATCTCCTCGAGTC 594 * ** * ** ** ***** ** ***** ** **** **** *** * ** ** * consensus_9739#0 TTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCC 780 consensus_9739#1 TCTTGTCATCAGTAACGAGCTGTTTTGGCCGGTAACCTGA---GTAGGATGA-------C 644 * **** ** ** *** ** ***** ** * * ** * ** * ** * consensus_9739#0 ATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTG 840 consensus_9739#1 AACTACTTGA-------TCAT-ATATCCTTCATTTTTCTTGCAATATTTTTGTATGTA-G 695 * * * *** **** ** **** * * * * ****** * * * consensus_9739#0 CTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATAT 900 consensus_9739#1 CACTGATCAACGATAGAGAGATTGT---GACACCCCTCCTACTCATGCTTGTTGCTGTTT 752 * * * ** ** * *** ** **** * ** ** *** * * consensus_9739#0 GTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCA 960 consensus_9739#1 AGACTAAGATCA--ATACGGGGTGAAAAGGTTTGTCGTACTTATGTA--TCTGAAGGTCA 808 * * ** * * * * ** * *** ** * * **** *** consensus_9739#0 GGAAAATGGAAATCTATCGAGATTCGAGAGTCAATAGTTTGTGAAATTTGGAACACTTGC 1020 consensus_9739#1 T-ATTGTGGAAAT------AAAGCTGTCCTTTCCTTGT--GTAAAAAAAAAAAAAAAAAA 859 * ******* * * * * * ** ** *** ** * consensus_9739#0 ACTGTAACTTACCTTCAATCTTGCATTGGGGGATTTCCCTTTTTTGACTTTAATCTGCCC 1080 consensus_9739#1 AAGGCCACAT-------------------------------------------------- 869 * * ** * consensus_9739#0 ATCTGCCTTACTACTCTTCAGATATTTGTTTTTATATTGAAGTCCCAATTTATGTGAATA 1140 consensus_9739#1 ------------------------------------------------------------ consensus_9739#0 T 1141 consensus_9739#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||