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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9739#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1141 fasta sequence
[AAGCAGCAGCAGCAGATTCGTCCGCGTCGCTCTGTCTGACAGTGTGGGCCCTCCCCGAGATGCAGGCGTGGTTCTCCGGCACGGGGCCCTCCGCCTCGTCGGCGTCGTCGTCGTCGTCGCCGCCGCAGCCGTCGCTGCTCGCGGAATGGAACTCCTACGCCGCCGCGCGCTCCGCGGAGGAGGAGGAGGACGGCGGCGGGGGAGGCTTCGGGATCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACCGCGTCTCCGGCACCTTCGGCGTGGTATCTAAAGGTGTTCTAGGGTTGCCAGGCAGCTTCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCCTTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCATGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTGGATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCACTTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCCATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTGCTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATATGTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCAGGAAAATGGAAATCTATCGAGATTCGAGAGTCAATAGTTTGTGAAATTTGGAACACTTGCACTGTAACTTACCTTCAATCTTGCATTGGGGGATTTCCCTTTTTTGACTTTAATCTGCCCATCTGCCTTACTACTCTTCAGATATTTGTTTTTATATTGAAGTCCCAATTTATGTGAATAT]
[+] EMBL AK061418 [AAGCAGCAGCAGCAGATTCGTCCGCGTCGCTCTGTCTGACAGTGTGGGCCCTCCCCGAGATGCAGGCGTGGTTCTCCGGCACGGGGCCCTCCGCCTCGTCGGCGTCGTCGTCGTCGTCGCCGCCGCAGCCGTCGCTGCTCGCGGAATGGAACTCCTACGCCGCCGCGCGCTCCGCGGAGGAGGAGGAGGACGGCGGCGGGGGAGGCTTCGGGATCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACCGCGTCTCCGGCACCTTCGGCGTGGTATCTAAAGGTGTTCTAGGGTTGCCAGGCAGCTTCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCCTTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCATGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTGGATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCACTTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCCATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTGCTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATATGTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCAGGAAAATGGAAATCTATCGAGATTCGAGAGTCAATAGTTTGTGAAATTTGGAACACTTGCACTGTAACTTACCTTCAATCTTGCATTGGGGGATTTCCCTTTTTTGACTTTAATCTGCCCATCTGCCTTACTACTCTTCAGATATTTGTTTTTATATTGAAGTCCCAATTTATGTGAATAT]
[+] EMBL AK104440 [ TCTGACAGTGTGGGCCCTCCCCGAGATGCAGGCGTGGTTCTCCGGCACGGGGCCCTCCGCCTCGTCGGCGTCGTCGTCGTCGTCGCCGCCGCAGCCGTCGCTGCTCGCGGAATGGAACTCCTACGCCGCCGCGCGCTCCGCGGAGGAGGAGGAGGACGGCGGCGGGGGAGGCTTCGGGATCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACCGCGTCTCCGGCACCTTCGGCGTGGTATCTAAAGGTGTTCTAGGGTTGCCAGGCAGCTTCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCCTTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCATGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTGGATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCACTTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCCATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTGCTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATATGTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCAGGAAAATGGAAATCTATCGAGATTCGAGAGTCAATAGTTTGTGAAATTTGGAACACTTGCACTGTAACTTACCTTCAATCTTGCATTGGGGGATTTCCCTTTTTTGACTTTAATCTGCCCATCTGCCTT ]
[-] EMBL CA999344 [ TCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCCTTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCATGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTGGATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGAGGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGGTGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCATATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCACTTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCCATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTGCTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATATGTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCAGGAAAAT ]
consensusID : consensus_9739#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 869 fasta sequence
[CCGGCGAGTCGCAGCCGTCCCTCCTCGCCGACTGGAACTCCTACGCCGCCTCCCGCCCCGACGCCTCCTCCTCCTCCCCTCTCCCTTTCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACACCGTCTCCGGCACCTTCAGCGTGGTGACCAAGGGCGTGCGGGAGCTGCCGGGGAGCTTCCAGAGCGCGACGAGCAGCTTCCCGTCGGGGAAGGCGCTCATGTACTTCGGACTCTTCCTCGCCACCGGCATCTTCTTCGTCTTCATCGCGTTCGCGCTCTTCCTCCCCGTCATGGTGATCATGCCGCAGAAGTTCGCCATCTGCTTCACGCTCGGCTGCGGGCTCATCATCGCATCCATCTTCGCGCTCAAAGGACCCGCCAGCCAGTTCGCCCACATGACCTCCATGGAGAGGCTACCATTTACAGGGGCACTTATTGGATGCATGGTTGGTACCATTTATGTGTCAATGTTTCTTCACAGCTATTTCCTCTCAGTGATATTCTCTGTCCTTCAGGTTCTATCTCTTGCTTACTACACCATATCCTACTTTCCTGGGGGTTCCAGTGGATTGAAATTTATCTCCTCGAGTCTCTTGTCATCAGTAACGAGCTGTTTTGGCCGGTAACCTGAGTAGGATGACAACTACTTGATCATATATCCTTCATTTTTCTTGCAATATTTTTGTATGTAGCACTGATCAACGATAGAGAGATTGTGACACCCCTCCTACTCATGCTTGTTGCTGTTTAGACTAAGATCAATACGGGGTGAAAAGGTTTGTCGTACTTATGTATCTGAAGGTC---------ATATTGTGGAAATAAAGCTGTCCTTTCCTTGTGTAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK109425 [CCGGCGAGTCGCAGCCGTCCCTCCTCGCCGACTGGAACTCCTACGCCGCCTCCCGCCCCGACGCCTCCTCCTCCTCCCCTCTCCCTTTCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACACCGTCTCCGGCACCTTCAGCGTGGTGACCAAGGGCGTGCGGGAGCTGCCGGGGAGCTTCCAGAGCGCGACGAGCAGCTTCCCGTCGGGGAAGGCGCTCATGTACTTCGGACTCTTCCTCGCCACCGGCATCTTCTTCGTCTTCATCGCGTTCGCGCTCTTCCTCCCCGTCATGGTGATCATGCCGCAGAAGTTCGCCATCTGCTTCACGCTCGGCTGCGGGCTCATCATCGCATCCATCTTCGCGCTCAAAGGACCCGCCAGCCAGTTCGCCCACATGACCTCCATGGAGAGGCTACCATTTACAGGGGCACTTATTGGATGCATGGTTGGTACCATTTATGTGTCAATGTTTCTTCACAGCTATTTCCTCTCAGTGATATTCTCTGTCCTTCAGGTTCTATCTCTTGCTTACTACACCATATCCTACTTTCCTGGGGGTTCCAGTGGATTGAAATTTATCTCCTCGAGTCTCTTGTCATCAGTAACGAGCTGTTTTGGCCGGTAACCTGAGTAGGATGACAACTACTTGATCATATATCCTTCATTTTTCTTGCAATATTTTTGTATGTAGCACTGATCAACGATAGAGAGATTGTGACACCCCTCCTACTCATGCTTGTTGCTGTTTAGACTAAGATCAATACGGGGTGAAAAGGTTTGTCGTACTTATGTATCTGAAGGTC ATATTGTGGAAATAAAGCTGTCCTTTCCTTGTGTAAAAAAAAAAAAAAAAAAAAGGCCACAT]
[+] EMBL AK068813 [CCGGCGAGTCGCAGCCGTCCCTCCTCGCCGACTGGAACTCCTACGCCGCCTCCCGCCCCGACGCCTCCTCCTCCTCCCCTCTCCCTTTCGACATCGAGGCCGCCGTCCGCTCCGCCAACGACACCGTCTCCGGCACCTTCAGCGTGGTGACCAAGGGCGTGCGGGAGCTGCCGGGGAGCTTCCAGAGCGCGACGAGCAGCTTCCCGTCGGGGAAGGCGCTCATGTACTTCGGACTCTTCCTCGCCACCGGCATCTTCTTCGTCTTCATCGCGTTCGCGCTCTTCCTCCCCGTCATGGTGATCATGCCGCAGAAGTTCGCCATCTGCTTCACGCTCGGCTGCGGGCTCATCATCGCATCCATCTTCGCGCTCAAAGGACCCGCCAGCCAGTTCGCCCACATGACCTCCATGGAGAGGCTACCATTTACAGGGGCACTTATTGGATGCATGGTTGGTACCATTTATGTGTCAATGTTTCTTCACAGCTATTTCCTCTCAGTGATATTCTCTGTCCTTCAGGTTCTATCTCTTGCTTACTACACCATATCCTACTTTCCTGGGGGTTCCAGTGGATTGAAATTTATCTCCTCGAGTCTCTTGTCATCAGTAACGAGCTGTTTTGGCCGGTAACCTGAGTAGGATGACAACTACTTGATCATATATCCTTCATTTTTCTTGCAATATTTTTGTATGTAGCACTGATCAACGATAGAGAGATTGTGACACCCCTCCTACTCATGCTTGTTGCTGTTTAGACTAAGATCAATACGGGGTGAAAAGGTTTGTCGTACTTATGTATCTGAAGGTC ATATTGTGGAAATAAAGCTGTCCT ]
[+] EMBL BI804667 [ AGAGATTGTGACACCCCTCCTACTCATGCTTGTTGCTGTTTAGACTAAGATC ATACGGGGTGAAAAGGTTTGTCGTACTTATGTATCTGAAGGTCCTTGCGATTATATTGTGGAAATAAAGCTGTCCTTTCCTTGTGTAAAAAA ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9739#0 AAGCAGCAGCAGCAGATTCGTCCGCGTCGCTCTGTCTGACAGTGTGGGCCCTCCCCGAGA 60
consensus_9739#1 ------------------------------------------------------------
consensus_9739#0 TGCAGGCGTGGTTCTCCGGCACGGGGCCCTCCGCCTCGTCGGCGTCGTCGTCGTCGTCGC 120
consensus_9739#1 -----------------------------------------------------CCGGCGA 7
** **
consensus_9739#0 CGCCGCAGCCGTCGCTGCTCGCGGAATGGAACTCCTACGCCGCCGCGCGCTCCGCGGAGG 180
consensus_9739#1 -GTCGCAGCCGTCCCTCCTCGCCGACTGGAACTCCTACGCCGCCTCCCGCCCCG------ 60
* ********** ** ***** ** ****************** * *** ***
consensus_9739#0 AGGAGGAGGACGGCGGCGGGGGAGGCTTCGGGATCGACATCGAGGCCGCCGTCCGCTCCG 240
consensus_9739#1 ------ACGCCTCCTCCTCCTCCCCTCTCCCTTTCGACATCGAGGCCGCCGTCCGCTCCG 114
* * * * * ** ***************************
consensus_9739#0 CCAACGACCGCGTCTCCGGCACCTTCGGCGTGGTATCTAAAGGTGTTCTAGGGTTGCCAG 300
consensus_9739#1 CCAACGACACCGTCTCCGGCACCTTCAGCGTGGTGACCAAGGGCGTGCGGGAGCTGCCGG 174
******** **************** ******* * ** ** ** * * * **** *
consensus_9739#0 GCAGCTTCAAGTCCACAACAAGCAGTGTTCCATCGAGCAAATCACTTGTGTATTTTGGCC 360
consensus_9739#1 GGAGCTTCCAGAGCGCGACGAGCAGCTTCCCGTCGGGGAAGGCGCTCATGTACTTCGGAC 234
* ****** ** * * ** ***** * ** *** * ** * ** **** ** ** *
consensus_9739#0 TTTTTCTTGCTAGTGGAATATTCCTAGTTTTCATTGCGTTCACGATATTTCTGCCAGTCA 420
consensus_9739#1 TCTTCCTCGCCACCGGCATCTTCTTCGTCTTCATCGCGTTCGCGCTCTTCCTCCCCGTCA 294
* ** ** ** * ** ** *** * ** ***** ****** ** * ** ** ** ****
consensus_9739#0 TGGTAATCATGCCTCAAAAGTTTGCCATCTGTTTCACGGCGGGATGCGCCTTCATAATTG 480
consensus_9739#1 TGGTGATCATGCCGCAGAAGTTCGCCATCTGCTTCACGCTCGGCTGCGGGCTCATCATCG 354
**** ******** ** ***** ******** ****** ** **** **** ** *
consensus_9739#0 GATCATTCTTTGCGCTAAAAGGGCCGAAGAATCAGCTCTATCATATGATTTCCAAAGAGA 540
consensus_9739#1 CATCCATCTTCGCGCTCAAAGGACCCGCCAGCCAGTTCGCCCACATGACCTCCATGGAGA 414
*** **** ***** ***** ** * *** ** ** **** **** ****
consensus_9739#0 GGTTACCTTTCACCATGGGATTTGTGGGCAGCATGGCTGCTACCATCTACGTGTCAATGG 600
consensus_9739#1 GGCTACCATTTACAGGGGCACTTATTGGATGCATGGTTGGTACCATTTATGTGTCAATGT 474
** **** ** ** ** * ** * ** ****** ** ****** ** *********
consensus_9739#0 TGCTCCATAGCTACATACTTTCAGTTTTCTTCTCTTGTCTTCAGGTACTTGCGCTAGCAT 660
consensus_9739#1 TTCTTCACAGCTATTTCCTCTCAGTGATATTCTCTGTCCTTCAGGTTCTATCTCTTGCTT 534
* ** ** ***** * ** ***** * ****** ******** ** * ** ** *
consensus_9739#0 ATTATGCTATTTCATACTTCCCCGGGGGATCTGCTGGAATGAAGTTTCTATCATCTGCAC 720
consensus_9739#1 ACTACACCATATCCTACTTTCCTGGGGGTTCCAGTGGATTGAAATTTATCTCCTCGAGTC 594
* ** * ** ** ***** ** ***** ** **** **** *** * ** ** *
consensus_9739#0 TTGTGTCCTCTGTGCTGAGATGCTTTGGGCGATGAGCTCACCCGTTAGTTGCTCTCACCC 780
consensus_9739#1 TCTTGTCATCAGTAACGAGCTGTTTTGGCCGGTAACCTGA---GTAGGATGA-------C 644
* **** ** ** *** ** ***** ** * * ** * ** * ** *
consensus_9739#0 ATCCATTTGGCGCGCATTCATCGTAACCTTGTGTAGTTCCATTACAGTTTTGTCTTTTTG 840
consensus_9739#1 AACTACTTGA-------TCAT-ATATCCTTCATTTTTCTTGCAATATTTTTGTATGTA-G 695
* * * *** **** ** **** * * * * ****** * * *
consensus_9739#0 CTTTTGCTATAGAGGTAGTGCCTGTCAAGATGACCCTGGTGCTGGTGTCCATTGAAATAT 900
consensus_9739#1 CACTGATCAACGATAGAGAGATTGT---GACACCCCTCCTACTCATGCTTGTTGCTGTTT 752
* * * ** ** * *** ** **** * ** ** *** * *
consensus_9739#0 GTGTGTATACCACTGTCCTGTATTGGGAGCTCTGTTCCTTGGATTGAATTATGAAAATCA 960
consensus_9739#1 AGACTAAGATCA--ATACGGGGTGAAAAGGTTTGTCGTACTTATGTA--TCTGAAGGTCA 808
* * ** * * * * ** * *** ** * * **** ***
consensus_9739#0 GGAAAATGGAAATCTATCGAGATTCGAGAGTCAATAGTTTGTGAAATTTGGAACACTTGC 1020
consensus_9739#1 T-ATTGTGGAAAT------AAAGCTGTCCTTTCCTTGT--GTAAAAAAAAAAAAAAAAAA 859
* ******* * * * * * ** ** *** ** *
consensus_9739#0 ACTGTAACTTACCTTCAATCTTGCATTGGGGGATTTCCCTTTTTTGACTTTAATCTGCCC 1080
consensus_9739#1 AAGGCCACAT-------------------------------------------------- 869
* * ** *
consensus_9739#0 ATCTGCCTTACTACTCTTCAGATATTTGTTTTTATATTGAAGTCCCAATTTATGTGAATA 1140
consensus_9739#1 ------------------------------------------------------------
consensus_9739#0 T 1141
consensus_9739#1 -
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||