These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1250 fasta sequence [AAATTCCTCCCCCACACCACGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGGTCGGTATCTCCTAGTCCTCCTCCCCTCCCGAGTACTAACCCCGGGCTCGGGATTCGCCTTTGCCTCGCGCTTCGTTTGTCGGAGAGATCCCCGCCCTGAAGCTGAGCCTGAGATGTTTTGCTTTGCTCGTGTCGTGTAGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGGAAATCATTGACATGATTTGCTGTGGGATGCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGT-TACAATTGATATACCATT-TCCA-T-TTCGAGCATTACCT-GTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTC-TTGA-GCAACTACTCCGA-GTCATGCTTCCACGATTTTT-GAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTT-CGGGTGATTCTTCAAGGAAACCA-CTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCA-TTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCCAAAACTCTTCTGCCTCCATACACACTACAATTATGGTCCTGTGAAAAAAAAAA] [+] EMBL AK071628 [AAATTCCTCCCCCACACCACGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGGTCGGTATCTCCTAGTCCTCCTCCCCTCCCGAGTACTAACCCCGGGCTCGGGATTCGCCTTTGCCTCGCGCTTCGTTTGTCGGAGAGATCCCCGCCCTGAAGCTGAGCCTGAGATGTTTTGCTTTGCTCGTGTCGTGTAGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGGAAATCATTGACATGATTTGCTGTGGGATGCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGT TACAATTGATATACCATT TCCA T TTCGAGCATTACCT GTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTC TTGA GCAACTACTCCGA GTCATGCTTCCACGATTTTT GAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTT CGGGTGATTCTTCAAGGAAACCA CTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCA TTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACA ] [+] EMBL BI805420 [ ACAATCGAGGTNTACAATTGATATACCNTTGTCCACTGTTCGA CATTACCTGGTTGAAGCCCTTGAATCAAGT GCAAGCAAGTTCTTTGACGCAACTACTCCGAGGTCATGCTTCCACGATTTTTGGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCCGGGTGATTCTTCAAGGAAACCACCTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTA GCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACCAAATCCACTTTGCTTCTTTGTGGTCTTTGCCTGCAGATGCTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCAC ATGTGTTGTTGTAAGATTAAC ATATCCGACCCAAAACTCTTCTGCCTCCATACACACTACAATTATGGTCCTGTGAAAAAAAAAA] consensusID : consensus_9742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1090 fasta sequence [CGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCAAAAACTCTTCTGCCTCCATACACATTACAAATTATGGTCCTGTGATATAAGGATTGTCTATGCAAGGAAGGGGTCGGATATGGTT] [+] EMBL AK104105 [CGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGAT ] [+] EMBL AK059776 [ TTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCAAAAACTCTTCTGCCTCCATACACATTACAAATTATGGTCCTGTGATATAAGGATTGTCTATGCAAGGAAGGGGTCGGATA ] [+] EMBL AK104220 [ TTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACA ] [+] EMBL CF301697 [ TCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCAAAAACTCTTCTGCCTCCATACACATTACAAATTATGGTCCTGTGATATAAGGATTGTCTATGCAAGGAAGGGGTCGGATATGGTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9742#0 AAATTCCTCCCCCACACCACGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGC 60 consensus_9742#1 -------------------CGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGC 41 ***************************************** consensus_9742#0 CGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCC 120 consensus_9742#1 CGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCC 101 ************************************************************ consensus_9742#0 CCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCG 180 consensus_9742#1 CCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCG 161 ************************************************************ consensus_9742#0 TCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCC 240 consensus_9742#1 TCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCC 221 ************************************************************ consensus_9742#0 GAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGGTCGGTATCTCCTAGTCCTCCTC 300 consensus_9742#1 GAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCG----------------------- 258 ************************************* consensus_9742#0 CCCTCCCGAGTACTAACCCCGGGCTCGGGATTCGCCTTTGCCTCGCGCTTCGTTTGTCGG 360 consensus_9742#1 ------------------------------------------------------------ consensus_9742#0 AGAGATCCCCGCCCTGAAGCTGAGCCTGAGATGTTTTGCTTTGCTCGTGTCGTGTAGCGG 420 consensus_9742#1 ---------------------------------------------------------CGG 261 *** consensus_9742#0 AGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCG 480 consensus_9742#1 AGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCG 321 ************************************************************ consensus_9742#0 TCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCT 540 consensus_9742#1 TCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCT 381 ************************************************************ consensus_9742#0 GCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCT 600 consensus_9742#1 GCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCT 441 ************************************************************ consensus_9742#0 CCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGGAAATC 660 consensus_9742#1 CCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAG------ 495 ****************************************************** consensus_9742#0 ATTGACATGATTTGCTGTGGGATGCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTA 720 consensus_9742#1 ---------------------------CTTCCATGGTGAATAAGGTGTTCTGCAACAGTA 528 ********************************* consensus_9742#0 GTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTG 780 consensus_9742#1 GTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTG 588 ************************************************************ consensus_9742#0 ATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAG 840 consensus_9742#1 ATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAG 648 ************************************************************ consensus_9742#0 TTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACT 900 consensus_9742#1 TTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACT 708 ************************************************************ consensus_9742#0 ACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAA 960 consensus_9742#1 ACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAA 768 ************************************************************ consensus_9742#0 GCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGA 1020 consensus_9742#1 GCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGA 828 ************************************************************ consensus_9742#0 TGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGT 1080 consensus_9742#1 TGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGT 888 ************************************************************ consensus_9742#0 GGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACAT 1140 consensus_9742#1 GGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACAT 948 ************************************************************ consensus_9742#0 ACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCCAAA 1200 consensus_9742#1 ACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCAAAA 1008 ******************************************************** *** consensus_9742#0 ACTCTTCTGCCTCCATACACACTACAA-TTATGGTCCTGTGAAAAAAAAAA--------- 1250 consensus_9742#1 ACTCTTCTGCCTCCATACACATTACAAATTATGGTCCTGTGATATAAGGATTGTCTATGC 1068 ********************* ***** ************** * ** * consensus_9742#0 ---------------------- consensus_9742#1 AAGGAAGGGGTCGGATATGGTT 1090 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||