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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9742#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1250 fasta sequence
[AAATTCCTCCCCCACACCACGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGGTCGGTATCTCCTAGTCCTCCTCCCCTCCCGAGTACTAACCCCGGGCTCGGGATTCGCCTTTGCCTCGCGCTTCGTTTGTCGGAGAGATCCCCGCCCTGAAGCTGAGCCTGAGATGTTTTGCTTTGCTCGTGTCGTGTAGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGGAAATCATTGACATGATTTGCTGTGGGATGCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGT-TACAATTGATATACCATT-TCCA-T-TTCGAGCATTACCT-GTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTC-TTGA-GCAACTACTCCGA-GTCATGCTTCCACGATTTTT-GAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTT-CGGGTGATTCTTCAAGGAAACCA-CTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCA-TTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCCAAAACTCTTCTGCCTCCATACACACTACAATTATGGTCCTGTGAAAAAAAAAA]
[+] EMBL AK071628 [AAATTCCTCCCCCACACCACGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGGTCGGTATCTCCTAGTCCTCCTCCCCTCCCGAGTACTAACCCCGGGCTCGGGATTCGCCTTTGCCTCGCGCTTCGTTTGTCGGAGAGATCCCCGCCCTGAAGCTGAGCCTGAGATGTTTTGCTTTGCTCGTGTCGTGTAGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGGAAATCATTGACATGATTTGCTGTGGGATGCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGT TACAATTGATATACCATT TCCA T TTCGAGCATTACCT GTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTC TTGA GCAACTACTCCGA GTCATGCTTCCACGATTTTT GAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTT CGGGTGATTCTTCAAGGAAACCA CTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCA TTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACA ]
[+] EMBL BI805420 [ ACAATCGAGGTNTACAATTGATATACCNTTGTCCACTGTTCGA CATTACCTGGTTGAAGCCCTTGAATCAAGT GCAAGCAAGTTCTTTGACGCAACTACTCCGAGGTCATGCTTCCACGATTTTTGGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCCGGGTGATTCTTCAAGGAAACCACCTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTA GCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACCAAATCCACTTTGCTTCTTTGTGGTCTTTGCCTGCAGATGCTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCAC ATGTGTTGTTGTAAGATTAAC ATATCCGACCCAAAACTCTTCTGCCTCCATACACACTACAATTATGGTCCTGTGAAAAAAAAAA]
consensusID : consensus_9742#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1090 fasta sequence
[CGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCAAAAACTCTTCTGCCTCCATACACATTACAAATTATGGTCCTGTGATATAAGGATTGTCTATGCAAGGAAGGGGTCGGATATGGTT]
[+] EMBL AK104105 [CGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGAT ]
[+] EMBL AK059776 [ TTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCAAAAACTCTTCTGCCTCCATACACATTACAAATTATGGTCCTGTGATATAAGGATTGTCTATGCAAGGAAGGGGTCGGATA ]
[+] EMBL AK104220 [ TTGCTCCAGTTCCCGGAGGGCCGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCCCCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCGTCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCCGAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGCGGAGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCGTCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCTGCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCTCCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTAGTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTGATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAGTTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACTACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAAGCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGATGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACA ]
[+] EMBL CF301697 [ TCGTTTTGCTCACAAAATCCATTTGCTTCTTTGTGGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACATACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCAAAAACTCTTCTGCCTCCATACACATTACAAATTATGGTCCTGTGATATAAGGATTGTCTATGCAAGGAAGGGGTCGGATATGGTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9742#0 AAATTCCTCCCCCACACCACGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGC 60
consensus_9742#1 -------------------CGCCTCCACCTCCGCCTCATTTGCTCCAGTTCCCGGAGGGC 41
*****************************************
consensus_9742#0 CGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCC 120
consensus_9742#1 CGCAACCACCGCTAGCCACTCACCCGGCACGGCATGGCTGCGTCGCTCCGGTCGCCGCCC 101
************************************************************
consensus_9742#0 CCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCG 180
consensus_9742#1 CCCTTCCCCGCCGCGGCGTTCCGCCGCCGCCGCGCCGTCGTGCGCGCCTCTTCCTCCTCG 161
************************************************************
consensus_9742#0 TCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCC 240
consensus_9742#1 TCGTCCTCCTCCTCGGCCGTGTCGTCCGCACCCAAGGCGCGCTTCGTCGCCCGCCGCTCC 221
************************************************************
consensus_9742#0 GAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCGGTCGGTATCTCCTAGTCCTCCTC 300
consensus_9742#1 GAGTCCACCTTCGTCCAGCAGCTCGCCCGCCCGCTCG----------------------- 258
*************************************
consensus_9742#0 CCCTCCCGAGTACTAACCCCGGGCTCGGGATTCGCCTTTGCCTCGCGCTTCGTTTGTCGG 360
consensus_9742#1 ------------------------------------------------------------
consensus_9742#0 AGAGATCCCCGCCCTGAAGCTGAGCCTGAGATGTTTTGCTTTGCTCGTGTCGTGTAGCGG 420
consensus_9742#1 ---------------------------------------------------------CGG 261
***
consensus_9742#0 AGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCG 480
consensus_9742#1 AGTACATGAGCTTGCCGGCGAGTCAGTACTCGGTGCTCGACGCGGAGCGCATCGAGCGCG 321
************************************************************
consensus_9742#0 TCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCT 540
consensus_9742#1 TCGACGAGTCCACCTTCCGCTGCTACGTCTACCGCTTCCGCTTCTTCGCGCTCGAGGTCT 381
************************************************************
consensus_9742#0 GCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCT 600
consensus_9742#1 GCCCCGTGCTACTTGTTCGCGTCGACGAGGAGCCCAACGGCTGCTGTATTAGCCTCCTCT 441
************************************************************
consensus_9742#0 CCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAGGAAATC 660
consensus_9742#1 CCTGCAAGCTCGAGGGATCACCGCTTGTGGAGGCTCAAAATGACAAGTTTTCAG------ 495
******************************************************
consensus_9742#0 ATTGACATGATTTGCTGTGGGATGCAGCTTCCATGGTGAATAAGGTGTTCTGCAACAGTA 720
consensus_9742#1 ---------------------------CTTCCATGGTGAATAAGGTGTTCTGCAACAGTA 528
*********************************
consensus_9742#0 GTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTG 780
consensus_9742#1 GTATGAGTGATTCAACATCTCAACAGCTTACATCGGATACTACAATCGAGGTTACAATTG 588
************************************************************
consensus_9742#0 ATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAG 840
consensus_9742#1 ATATACCATTTCCATTTCGAGCATTACCTGTTGAAGCCATTGAATCAAGTGGCAAGCAAG 648
************************************************************
consensus_9742#0 TTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACT 900
consensus_9742#1 TTCTTGAGCAACTACTCCGAGTCATGCTTCCACGATTTTTGAAGCAGCTTGTTAAAGACT 708
************************************************************
consensus_9742#0 ACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAA 960
consensus_9742#1 ACCAAGCATGGGCTTCGGGTGATTCTTCAAGGAAACCACTTGGCACTGGTGAAATATGAA 768
************************************************************
consensus_9742#0 GCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGA 1020
consensus_9742#1 GCTTCGCAGTGTCTCCATTAGGCATTATAGTCTTTTCTTGTTGCATTAGTTATTGCTTGA 828
************************************************************
consensus_9742#0 TGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGT 1080
consensus_9742#1 TGGGGTATAGAAAAGCTGTTTATACGTCGTTTTGCTCACAAAATCCATTTGCTTCTTTGT 888
************************************************************
consensus_9742#0 GGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACAT 1140
consensus_9742#1 GGTCTTTGCCTGAAGATGTTCTGTAGTGTGTATGGATTTGTGCCATGCGACCAGTCACAT 948
************************************************************
consensus_9742#0 ACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCCAAA 1200
consensus_9742#1 ACATTTGTAGGTTGTTCATTCACAATGTGTTGTTGTAAGATTAACAATATCCGACCAAAA 1008
******************************************************** ***
consensus_9742#0 ACTCTTCTGCCTCCATACACACTACAA-TTATGGTCCTGTGAAAAAAAAAA--------- 1250
consensus_9742#1 ACTCTTCTGCCTCCATACACATTACAAATTATGGTCCTGTGATATAAGGATTGTCTATGC 1068
********************* ***** ************** * ** *
consensus_9742#0 ----------------------
consensus_9742#1 AAGGAAGGGGTCGGATATGGTT 1090
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||