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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9751#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1195 fasta sequence
[TTTTTTTTTTTTTTTCAGGTTAAAAATGAGATACCTAAAGCTGACAAGAGAAGATTGATGTAAATATCATAACAGCCCTAAAAAATTACTACGTCTTCTAGCTGTTCGATGGAGAACCCTTTTGCTTTCTCTCCACGAGCTGTCAGTTTCGCTATGACAACGTAAAAGTTTTATTAAATCGACCCTTACATGTGTTTTCTCCCATTGGCTACTACTGTTGCACTGGATAGCTCCCACTCTTCCTGCTGCTTCACAAGATGCCGGAGGGGTGTGAGGTCCTGCTTCGGTCGTTGATCTATCGTCCTCATGGGCTAAGCATGGAAGGGATATATACTCTCCGCCATTATTAGGACGGCATGCAGGGCAATAGAATGTTTTTGGAGGGGGTCCATGCAATTTGATACAATCAAAATGATACCATTCGTCACATTGATCACATGCGATCATGGCCCTATTATCATATGGCTTACGGCAAATGCAATATAGAACACTGCGGTCTCGTAGTAACTTCAGTTCCTTCTCAACATGCACAGTAAGACTTTCG-CCTTCAATAATAAGTCCATACACAAGG-TCAAGGGCGAGCTTACCAGAATCAAGTGTAGTCTTT-TCTGCTTTGGCCAGCCACTGCAGACTAGTTTCCTTTATTTTATTAATCTCCAACTTGAAGAAATCTTCACCACATATCTCTAAACTTGAACCCTCATTATCAAGCATCAGTACTTGTTGGATCGGTATCTTTTTTCCACCACACAAGAGAATATGTATTCGTTTTTNCCAGGAATATCTGCTCAACATTGACTCAATTCTGCAACTG-ATCTGGTGATCATATAAGCCAG-CAGCCGATGTTGCCTTTAGAGCAAT-CAAAAGAGATCTGTGCATGACACTAAGATCTTCTCCATGGTAAGAGTCTGCATCATGCAATATTTGCATAAGGTAGGACTTAAATTTATGAGCTTTCTCAGCAATTTCTTCTAATAAATCCAACTCCTCAATCCCTGAATAGAAACCCTTGGCAAAAGAGCGGAGCCCGATTAATGCAGGAAGTGCTGGACGATTCCCTTTAGATATCTTCTCCTGTAGTCTATTCTGTAATGGGTCCCCACTTTCTAAATGAAAGCAAAAAGGACAGGTCCATTCACGAGTCACTTGTGTAGAAGCAGGCAGTGGTTCGACACAGGAGCTATGATACCTCGCT]
[+] EMBL CA762550 [TTTTTTTTTTTTTTTCAGGTTAAAAATGAGATACCTAAAGCTGACAAGAGAAGATTGATGTAAATATCATAACAGCCCTAAAAAATTACTACGTCTTCTAGCTGTTCGATGGAGAACCCTTTTGCTTTCTCTCCACGAGCTGTCAGTTTCGCTATGACAACGTAAAAGTTTTATTAAATCGACCCTTACATGTGTTTTCTCCCATTGGCTACTACTGTTGCACTGGATAGCTCCCACTCTTCCTGCTGCTTCACAAGATGCCGGAGGGGTGTGAGGTCCTGCTTCGGTCGTTGATCTATCGTCCTCATGGGCTAAGCATGGAAGGGATATATACTCTCCGCCATTATTAGGACGGCATGCAGGGCAATAGAATGTTTTTGGAGGGGGTCCATGCAATTTGATACAATCAAAATGATACCATTCGTCACATTGATCACATGCGATCATGGCCCTATTATCATATGGCTTACGGCAAATGCAATATAGAACACTGCGGTCTCGTAGTAACTTCAGTTCCTTCTCAACATGCACAGTAAGACTTTCG CCTTCAATAATAAGTCCATACACAAGG TCAAGGGCGAGCTTACCAGAATCAAGTGTAGTCTTT TCTGCTTTGGCCAGCCACTGCAGACTAGTTTCCTTTATTTTATTAATCTCCAACTTGAAGAAATCTTCACCACATATCTCTAAAC ]
[-] EMBL OS2011A [ aAAGACTTNCGCCCTTCAATAATAAGGCCATACACAAGGNTCAAGGGCGAGC TACCAGAANCAAGTGTAGCCTTTNCCTGCTTTGGCCAGCCACTGCAGACTAGTTNCCTTTATTTTATTAATCTCCAACTTGAAGAAATCTTCACCACATATCTCTAAACTTGAACCCTCATTATCAAGCATCAGTACTTGTTGGATCGGTATCTTTTTTCCACCACACAAGAGAATATGTATTCGTTTTTNCCAGGAATATCTGCTCAACATTGACTCAATTCTGCAACTG ATCTGGTGATCATATAAGCCAG CAGCCGATGTTGCCTTTAGAGCAAT CAAAAGAGATCTGTGCATGACACTAAGATCTTCTCCATGGTAAGAGTCTGCATCATG ]
[-] EMBL C98755 [ AATATGTATTCGTTTTTTCCAGGAATATCTGCTCAACATTGACTCAATTCTGCAACTGAATCTGGTGATCATATAAGCCAGNCAGCCGATGTTGCCTTTAGAGCAATCCAAAAGAGATCTGTGCATGACACTAAGATCTTCTCCATGGTAAGAGTCTGCATCATGCAATATTTGCATAAGGTAGGACTTAAATTTATGAGCTTTCTCAGCAATTTCTTCTAATAAATCCAACTCCTCAATCCCTGAATAGAAACCCTTGGCAAAAGAGCGGAGCCCGATTAATGCAGGAAGTGCTGGACGATTCCCTTTAGATATCTTCTCCTGTAGTCTATTCTGTAATGGGTCCCCACTTTCTAAATGAAAGCAAAAAGGACAGGTCCATTCACGAGTCACTTGTGTAGAAGCAGGCAGTGGTTCGACACAGGAGCTATGATACCTCGCT]
consensusID : consensus_9751#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 494 fasta sequence
[TTTTTTTTTTGGCAAGCTACAAATATTTGATTAATAGTAAAGTACTTAAGGTTCAAACCGCAATACATCCATTGACAGCACCAGATCATAATAAAAGAATTGCCTCAAGAATTTTCATGTTAAAAATGAGATACCTAAAGCTGACAAGAGAAGATTGATGTAAATATCATAACAGCCCTAAAAAATTACTACGTCTTCTAGCTGTTCGATGGAGAACCCTTTTGCTTTCTCTCCACGAGCTGTCAGTTTCGCTATGACAACGTAGAAGTTTTATTAAATCGACCCTTACATGTGTTTTCTCCCATTGGCTACTACTG-TTGCACTGGATAGCTCCCACTCTT-CCT-GCTGC-TTCACAAGA-TGCCGGAGGGGTGTGAGGTCCT-GCTT-CGG-TCGTT-GATCTAT-CGTCCTCATGGGCTAAGCCATGGAAGTGATATTATAACTCTCCGCCATTATTAGGACGGCATGCAGGGCAATAGAATGTTTTTGGAGGGGGTCCA]
[-] EMBL BI809923 [TTTTTTTTTTGGCAAGCTACAAATATTTGATTAATAGTAAAGTACTTAAGGTTCAAACCGCAATGCATCCATTGACAGCACCAGACCATAATAAAAGAATTGCCTCAAGAATTTTCATGTTAAAAATGAGATACCTAAAGCTGACAAGAGAAGATTGATGTAAATATCATAACAGCCCTAAAAAATTACTACGTCTTCTAGCTGTTCGATGGAGAACCC TTTGCTTTCTCTCCACGAGCTGTCAGTTTCGCTATGACAACGTAGAAGTTTTATTAAATCGA CCTTACATGTG TTTCTCCCATTGGCTACTACTGTTTGCACTGGATAGCTCCCACTCTT CCT GCTGC TTCACAAGA TGCCGGAGGGGTGTGAGGTCCT GCTT CGGATCGTT GATCTAT CGTCCTCATGGGC ]
[-] EMBL C98756 [ TTTTTGGCAANCTACAAATATTTGATTAATAGTAAAGTACTTAAGGTTCAAACCGCAATACATCCATTGACAGCACCAGATCATAATAAAAGAATTGCCTCAAGAATTTTCATGTTAAAAATGAGATACCTAAAGCTGACAAGAGAAGATTGATGTAAATATCATAACAGCCCTAAAAAATTACTACGTCTTCTAGCTGTTCGATGGAGAACCCTTTTGCTTTCTCTCCACGAGCTGTCAGTTTCGCTATGACAACGTAGAAGTTTTATTAAATCGACCCTTACATGTGTTTTCTCCCATTGGCTACTACTG TTGCACTGGATAGCTCCCACNCTTACCTNGCTGCTTTCANAAGATTGCCGGAGGGGTGTGAGGGCCTGGCTTACGG TCGTTGGATCTATCCGTCCTCATGGGCTAAGCCATGGAAGTGATATTATAACTCTCC ]
[-] EMBL AK062465 [ CCGCAATACATCCATTGACAGCACCAGATCATAATAAAAGAATTGCCTCAAGAATTTTCATGTTAAAAATGAGATACCTAAAGCTGACAAGAGAAGATTGATGTAAATATCATAACAGCCCTAAAAAATTACTACGTCTTCTAGCTGTTCGATGGAGAACCCTTTTGCTTTCTCTCCACGAGCTGTCAGTTTCGCTATGACAACGTAGAAGTTTTATTAAATCGACCCTTACATGTGTTTTCTCCCATTGGCTACTACTG TTGCACTGGATAGCTCCCACTCTT CCT GCTGC TTCACAAGA TGCCGGAGGGGTGTGAGGTCCT GCTT CGG TCGTT GATCTAT CGTCCTCATGGGCTAAG CATGGAAGTGATA TAT ACTCTCCGCCATTATTAGGACGGCATGCAGGGCAATAGAATGTTTTTGGAGGGGGTCCA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9751#0 ------------------------------------------------------------
consensus_9751#1 TTTTTTTTTTGGCAAGCTACAAATATTTGATTAATAGTAAAGTACTTAAGGTTCAAACCG 60
consensus_9751#0 ----------------------------------------TTTTTTTTTTTTTTTCAGGT 20
consensus_9751#1 CAATACATCCATTGACAGCACCAGATCATAATAAAAGAATTGCCTCAAGAATTTTCATGT 120
* * ****** **
consensus_9751#0 TAAAAATGAGATACCTAAAGCTGACAAGAGAAGATTGATGTAAATATCATAACAGCCCTA 80
consensus_9751#1 TAAAAATGAGATACCTAAAGCTGACAAGAGAAGATTGATGTAAATATCATAACAGCCCTA 180
************************************************************
consensus_9751#0 AAAAATTACTACGTCTTCTAGCTGTTCGATGGAGAACCCTTTTGCTTTCTCTCCACGAGC 140
consensus_9751#1 AAAAATTACTACGTCTTCTAGCTGTTCGATGGAGAACCCTTTTGCTTTCTCTCCACGAGC 240
************************************************************
consensus_9751#0 TGTCAGTTTCGCTATGACAACGTAAAAGTTTTATTAAATCGACCCTTACATGTGTTTTCT 200
consensus_9751#1 TGTCAGTTTCGCTATGACAACGTAGAAGTTTTATTAAATCGACCCTTACATGTGTTTTCT 300
************************ ***********************************
consensus_9751#0 CCCATTGGCTACTACTGTTGCACTGGATAGCTCCCACTCTTCCTGCTGCTTCACAAGATG 260
consensus_9751#1 CCCATTGGCTACTACTGTTGCACTGGATAGCTCCCACTCTTCCTGCTGCTTCACAAGATG 360
************************************************************
consensus_9751#0 CCGGAGGGGTGTGAGGTCCTGCTTCGGTCGTTGATCTATCGTCCTCATGGGCTAAGC-AT 319
consensus_9751#1 CCGGAGGGGTGTGAGGTCCTGCTTCGGTCGTTGATCTATCGTCCTCATGGGCTAAGCCAT 420
********************************************************* **
consensus_9751#0 GGAAGGGATAT-ATA-CTCTCCGCCATTATTAGGACGGCATGCAGGGCAATAGAATGTTT 377
consensus_9751#1 GGAAGTGATATTATAACTCTCCGCCATTATTAGGACGGCATGCAGGGCAATAGAATGTTT 480
***** ***** *** ********************************************
consensus_9751#0 TTGGAGGGGGTCCATGCAATTTGATACAATCAAAATGATACCATTCGTCACATTGATCAC 437
consensus_9751#1 TTGGAGGGGGTCCA---------------------------------------------- 494
**************
consensus_9751#0 ATGCGATCATGGCCCTATTATCATATGGCTTACGGCAAATGCAATATAGAACACTGCGGT 497
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 CTCGTAGTAACTTCAGTTCCTTCTCAACATGCACAGTAAGACTTTCGCCTTCAATAATAA 557
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 GTCCATACACAAGGTCAAGGGCGAGCTTACCAGAATCAAGTGTAGTCTTTTCTGCTTTGG 617
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 CCAGCCACTGCAGACTAGTTTCCTTTATTTTATTAATCTCCAACTTGAAGAAATCTTCAC 677
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 CACATATCTCTAAACTTGAACCCTCATTATCAAGCATCAGTACTTGTTGGATCGGTATCT 737
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 TTTTTCCACCACACAAGAGAATATGTATTCGTTTTTNCCAGGAATATCTGCTCAACATTG 797
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 ACTCAATTCTGCAACTGATCTGGTGATCATATAAGCCAGCAGCCGATGTTGCCTTTAGAG 857
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 CAATCAAAAGAGATCTGTGCATGACACTAAGATCTTCTCCATGGTAAGAGTCTGCATCAT 917
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 GCAATATTTGCATAAGGTAGGACTTAAATTTATGAGCTTTCTCAGCAATTTCTTCTAATA 977
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 AATCCAACTCCTCAATCCCTGAATAGAAACCCTTGGCAAAAGAGCGGAGCCCGATTAATG 1037
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 CAGGAAGTGCTGGACGATTCCCTTTAGATATCTTCTCCTGTAGTCTATTCTGTAATGGGT 1097
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 CCCCACTTTCTAAATGAAAGCAAAAAGGACAGGTCCATTCACGAGTCACTTGTGTAGAAG 1157
consensus_9751#1 ------------------------------------------------------------
consensus_9751#0 CAGGCAGTGGTTCGACACAGGAGCTATGATACCTCGCT 1195
consensus_9751#1 --------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||