These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [NGCCAGGTACCCGGTTCCGAAATTTCCCGGGTCGACCCCACGCTGTCCCCTGACACCAAAATTGAGAGTTAAGAGATACCATCTTACGCATGCAACCTCTGTCATGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCCAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCANATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATCTTTATACTGGAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGGCTGGTGCTCTTCCTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCCAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTATGTGTTCGTGCCAATAATATAGAAGCTCAATAAGCAGAGTAAAAAAAA] [+] EMBL BQ907184 [NGCCAGGTACCCGGTTCCGAAATTTCCCGGGTCGACCCCACGCTGTCCCCTGACACCAAAATTGAGAGTTAAGAGATACCATCTTACGCATGCAACCTCTGTCATGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCCAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCANATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATCTTTATACTGGAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGGCTGGTGCTCTTCCTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCCAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTATGTGTTCGTGCCAATAATATAGAAGCTCAATAAGCAGAGTAAAAAAAA] consensusID : consensus_9753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 684 fasta sequence [AGGCCGAGACAAGGGGGAAGAAAAGAGGCTGCCAGCAAATGGGAGAGTAAGAGATAGCATCTTACGCATGCCAACCTCTGTCATGGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTTAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACACGTCCGGAAGGCCAATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCCCCAAGTGGTGATCTTTATACTGGAGG-AAAGACAGGGTTG-TTGCTCTGGGCAGTCACTCTTTCTGGAATT-TTGCTGGCTGGTGC-TCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTTTGAGTGAATAAAACTATGTAAGTAATGTTTTTATGTGTTCGTGCAATAATATAGAAGCTCGATAAGCAGAGTAAACATATGGGGTTCAAAAAAAAAAAAA] [-] EMBL CA762808 [AGGCCGAGACAAGGGGGAAGAAAAGAGGCTGCCAGCAAATGGGAGAGTAAGAGATAGCATCTTACGCATGCCAACCTCTGTCATGGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTTAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACACGTCCGGAAGGCCAATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCCCCAAGTGGTGATCTTTATACTGGAGG AAAGACAGGGTTG TTGCTCTGGGCAGTCACTCTTTCTGGAATT TTGCTGGCTGGTGC TCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTTTGAGTGAATAAAACTATGTAAGTAATGTTTTTATGTGTTCGTGCAATAATATAGAAGCTCGATAAGCAGAGTAAACATATGGGGTTCAAAAAAAAAAAAA] [+] EMBL CB630985 [ AGAGTAAGAGATAGCATCTTACGCATGGCAACCTCTGTCATGGCCTCTTGTGCTCTAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGACCTGGAGGAGGACTGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATCTTTATACTGGAGG AAAGACAGGGTTG TTGCTCTGGGCAGTCACTCTTTCTGGAATT CTGCTGGCTGGTGC TCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAG ] [+] EMBL BI810336 [ TGGAGGTAAAGACAGGGTTGTTTGCTCTGGCAAGTCACTCTTTCTGGAATTCTTGCTGGCTGGTGCATCTTCTTGTCTACCATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCCACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCC ] consensusID : consensus_9753#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGTTAGTACACGCTACAGAGTTTAGCACTGGAAAAACTGCATAGAGGTTAAGCTTCAAGTTAGTAGCTTAATTGCCCCTTGTTTCATGTATGCACAAGCACACCATTCTTTTCAGTGGCTCAAACTATTTCAGAAAAAAATCAGAGAACTAGCACTGATTCTAATGGATGACACTATCAACATAGTACTATTTTATATATGAACATATGTAATGTTAACATGTAGGACCTGGAGGAGGACCGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGTCAGGGCTGAGGTTGAAAGCAAAATTAGAGAAAAATCAACAATAGTAAAATCTGCTCATCACTATATTTCTTTTCCATTGTAATTAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGGTAAAACATTCATCTGAATAGAAGAACAGCAGGCATAACATTCAT] [+] EMBL CF308328 [CATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCATCAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGCCTTTCGGTTAGTACACGCTACAGAGTTTAGCACTGGAAAAACTGCATAGAGGTTAAGCTTCAAGTTAGTAGCTTAATTGCCCCTTGTTTCATGTATGCACAAGCACACCATTCTTTTCAGTGGCTCAAACTATTTCAGAAAAAAATCAGAGAACTAGCACTGATTCTAATGGATGACACTATCAACATAGTACTATTTTATATATGAACATATGTAATGTTAACATGTAGGACCTGGAGGAGGACCGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGTCAGGGCTGAGGTTGAAAGCAAAATTAGAGAAAAATCAACAATAGTAAAATCTGCTCATCACTATATTTCTTTTCCATTGTAATTAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGGAGCTAATGTTGATGGATACAGGTAAAACATTCATCTGAATAGAAGAACAGCAGGCATAACATTCAT] consensusID : consensus_9753#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CATAATGGATATTTGCTGTATTTATTGTAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATGTTTATACTGGAGGTAAGCACATATAACCATCCCAAAAGGCCAAACACTTTTTAGCGCTCACCGCTACTTAAAAAATATCAGACAAATCAATTTCCAAAGCACATATAATTTTCATCCCTTGCTTTATGCAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGGCTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTATGTGTTCGTGCAATAATATAGAAGCTCAATAAGCAGAGTAAAAAAAAAAAACAAAAAAA] [-] EMBL CF308327 [CATAATGGATATTTGCTGTATTTATTGTAGCCCAATATATAACCCAGAGGAATGGTCACCAAGTGGTGATGTTTATACTGGAGGTAAGCACATATAACCATCCCAAAAGGCCAAACACTTTTTAGCGCTCACCGCTACTTAAAAAATATCAGACAAATCAATTTCCAAAGCACATATAATTTTCATCCCTTGCTTTATGCAGGAAAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGGCTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAGAAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACAGCTATGTTCCTAGAATTAACTTCTGAGTGAATAAAACTATGTAAGTAATGTTCTTATGTGTTCGTGCAATAATATAGAAGCTCAATAAGCAGAGTAAAAAAAAAAAACAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9753#0 NGCCAGGTACCCGGTTCCGAAATTTCCCGGGTCGACCCCACGCTGTCCCCTGACACCAAA 60 consensus_9753#1 -------------AGGCCGAGA----CAAGGGGGAAGAAAAGAGG----CTGCCAGCAAA 39 consensus_9753#3 ------------------------------------------------------------ consensus_9753#2 ------------------------------------------------------------ consensus_9753#0 ATTGAGAGTTAAGAGATACCATCTTACGCATGC-AACCTCTGTCATG-CCTCTTGTGCTC 118 consensus_9753#1 TGGGAGAGT-AAGAGATAGCATCTTACGCATGCCAACCTCTGTCATGGCCTCTTGTGCTC 98 consensus_9753#3 ------------------------------------------------------------ consensus_9753#2 ------------------------------------------------------------ consensus_9753#0 TAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCAT 178 consensus_9753#1 TAAAACCATCTCCATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCAT 158 consensus_9753#3 ------------------------------------------------------------ consensus_9753#2 ------------CATCTCCATTTTTGGAACAGACGCGAATCCGAGCCATCCAACCATCAT 48 consensus_9753#0 CAAGGCCATCCTTGTTCAGAGTAATGGCCCAAAAAGCAAAGAAGATCCAGACTTCTCAGC 238 consensus_9753#1 CAAGGCCATCCTTGTTTAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGC 218 consensus_9753#3 -----------------------------CATAATGGATATTTGCTGTATTTATTGTAGC 31 consensus_9753#2 CAAGGCCATCCTTGTTCAGAGTAATGGCCAAAAAAGCAAAGAAGATCCAGACTTCTCAGC 108 * ** * * * * * * * *** consensus_9753#0 CTTTCGG-----ACCTGGAGGAGGACTGAAC-CTGAAAGACGGTGTTGACGCGTCCGGAA 292 consensus_9753#1 CTTTCGG-----ACCTGGAGGAGGACTGAAC-CTGAAAGACGGTGTTGACACGTCCGGAA 272 consensus_9753#3 CCAATAT-----ATAACCCAGAGGAATGGTCACCAAGTGGTGATGTTTATACTGGAGGTA 86 consensus_9753#2 CTTTCGGTTAGTACACGCTACAGAGTTTAGCACTGGAAAA-ACTGCATAGAGGTT---AA 164 * * ** * * * ** * * consensus_9753#0 GGC-CANATCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGG--AGCTAATGTT 349 consensus_9753#1 GGC-CAA-TCAAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTATGG--AGCTAATGTT 328 consensus_9753#3 AGCACATATAACCATCCCAAAAGGCCAAACACTTTTTAGCGCTCACCGCTACTTAAAAAA 146 consensus_9753#2 GCTTCAAGTTAGTAGCTTAATTGCCCCTTGTTTCAT--GTATGCACAA--GCACACCATT 220 ** * * * * * * * * * consensus_9753#0 GATGGATACAGCCCAATATATAACCCAGAGGAAT-GGTCACCAAGTGGTGATCTTTATAC 408 consensus_9753#1 GATGGATACAGCCCAATATATAACCCAGAGGAAT-GGTCCCCAAGTGGTGATCTTTATAC 387 consensus_9753#3 TATC-AGACAAATCAATTTCCAAAGCACAT--AT-AATTTTCATCCCTTG--CTTTATGC 200 consensus_9753#2 CTTTTCAGTGGCTCAAACTATTTCAGAAAAAAATCAGAGAACTAGCACTGATTCTAATGG 280 * *** * * * ** * ** * ** consensus_9753#0 TGGAGGA----AAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGG 464 consensus_9753#1 TGGAGGA----AAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTTTGCTGG 443 consensus_9753#3 ---AGGA----AAGACAGGGTTGTTGCTCTGGGCAGTCACTCTTTCTGGAATTCTGCTGG 253 consensus_9753#2 ATGACACTATCAACATAGTACTATT-TTATATATGAACATATGTAATGTTAACATGTAGG 339 * ** * ** * ** * * ** * ** * ** ** consensus_9753#0 --CTGGTGCTCTTCCTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAG 522 consensus_9753#1 --CTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAG 501 consensus_9753#3 --CTGGTGCTCTTCTTGTCTACAATACTAGTGCCTTGGCTTCTTGAAGCTTGTTTTGAAG 311 consensus_9753#2 ACCTGGAGGAGGACCGAACCTGAAAGACGGTGTTGACGCGTCCGGAAGGCCAATCAAGGT 399 **** * * * ** *** ** ** **** * consensus_9753#0 AAAACCAACTTATTGTAGTGCCATGCCAGGTTTACATATTCTAGAATGGATCTGTGTACA 582 consensus_9753#1 AAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACA 561 consensus_9753#3 AAAACCAACTTATTGTAGTGCCATGCAAGGTTTACATATTCTAGAATGGATCTGTGTACA 371 consensus_9753#2 CAGGGCTGAGGTTGAAAGCAAAATTAGAGAAAAATCAACAATAGTA-AAATCTGCTCATC 458 * * * ** ** ** * * *** * ***** * consensus_9753#0 GCTATGTTCCTAGA--ATTAACTTCTGAGTGAATAAAACTAT--GTAAGTAATGTTCTTA 638 consensus_9753#1 GCTATGTTCCTAGA--ATTAACTTTTGAGTGAATAAAACTAT--GTAAGTAATGTTTTTA 617 consensus_9753#3 GCTATGTTCCTAGA--ATTAACTTCTGAGTGAATAAAACTAT--GTAAGTAATGTTCTTA 427 consensus_9753#2 ACTATATTTCTTTTCCATTGTAATTAGGGGAAAGGGGTCTACCAGTTTGCCAGCAAGTAT 518 **** ** ** *** * * * ** *** ** * * * consensus_9753#0 TGTGTTCGTGCCAATA-ATATAGA-AGCTCAATAAGCAGAGTAAAAAAAA---------- 686 consensus_9753#1 TGTGTTCGTGC-AATA-ATATAGA-AGCTCGATAAGCAGAGTAAACATATGGGGTTCAAA 674 consensus_9753#3 TGTGTTCGTGC-AATA-ATATAGA-AGCTCAATAAGCAGAGTAAAAAAAAAAAACAAAAA 484 consensus_9753#2 GGAGCTAATGTTGATGGATACAGGTAAAACATTCATCTGAATAGAAGAACAGCAGGCATA 578 * * * ** ** *** ** * * * * * ** ** * * consensus_9753#0 ---------- consensus_9753#1 AAAAAAAAAA 684 consensus_9753#3 AA-------- 486 consensus_9753#2 ACATTCAT-- 586 |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||