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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1106 fasta sequence
[CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCGCCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCGACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGGCCCACGACCTCGGGTCCGCGGCCGTCACCGCAGGCGTCGCCCTCGCCCTCCTCCGCTTCTTCGAGGAGCTCGCCAAGCGCGGGGTCTTCGAGCAGAAACTCAATAGAAAACTTGTGCATATAACTATCGGTATGGTATTCTTGCTCTTTTGGCCTCTTTTCAGCTCAGGAAGCTATGCTCCTTTCCTGGCTGCAGTAGCACCAGGGATTAATATTATAAGGATGCTTCTGCTGGGGTTAGGAGTAATGAAAAATGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGGGAAC-TTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCA-ATGGCACTAGCTGGTTTCATGGCTTCAATT-GGGTATATGCATTACTT-CCAGTCATTC-GGTTTCATTGAAGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATGTTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCCAATGGTATGAACAAAATTGCCCACTGGTACTTTTACCAACTAGCATTATGTACTTCCTTGNGAAAAAAANAAACATTATATACTTTGTACAGATTTAGCTAGATATTTGNAGTATGTCAAAAAAAAAAAAAAAAAAAAAAACGGCCG]
[+] EMBL AK061265 [CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCGCCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCGACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGGCCCACGACCTCGGGTCCGCGGCCGTCACCGCAGGCGTCGCCCTCGCCCTCCTCCGCTTCTTCGAGGAGCTCGCCAAGCGCGGGGTCTTCGAGCAGAAACTCAATAGAAAACTTGTGCATATAACTATCGGTATGGTATTCTTGCTCTTTTGGCCTCTTTTCAGCTCAGGAAGCTATGCTCCTTTCCTGGCTGCAGTAGCACCAGGGATTAATATTATAAGGATGCTTCTGCTGGGGTTAGGAGTAATGAAAAATGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGGGAAC TTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCA ATGGCACTAGCTGGTTTCATGGCTTCAATT GGGTATATGCATTACTT CCAGTCATTC GGTTTCATTGAAGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATGTTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCCAATGGTATGAACAAAATTGCCCAC ]
[+] EMBL CA767039 [ TTCAGCTCAGGAAGCTATGCTCCTTACCTGGCTGCAGTAGCACCAGGGATTAATATTATAAGGATGCTTCTGCTGGGGTTAGGAGTAATGAAAAATGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGGGAAC TTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAACAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCA ATGGCACTAGCTGGTTTCATGGCTTCAATT GGGTATATGCATTACTT CCAGTCATTC GGTTTCATTGAGGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCCGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGNTTTCTGATGGTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAANGAATATTTCGATAAGGAACTTTGGTTCCAATGGTATGAACAAAATTGCCCACTGGTACTTTTACCAACTAGCATTATGTACTTCCTTGNGAAAAAAANAAACATTATATACTTTGTACAGATTTAGCTAGATATTTGNAGTATGTCAAAAAAAAAAAAAAAAAAAAAAACGGCCG]
[+] EMBL OS0191A [ TGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGGGAAC TTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCA ATGGCACTAGCTGGTTTCATGGCTTCAATTGGGGTATATGCATTACTTNCCAGTAATTCGGGTTTCATT ]
[+] EMBL BI810540 [ AGCTATGGTAAAATCAATGA CCGATCTGGAGACCCGAGGGAACTTTCTCAAGGGTCCCCTGTATTATGCTACCACTATAACTTTT CCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCACATGGCACTAGCTGGTTTCATGGCTTCAATT GGGTATATGCATTACTT CCAGTCATTC GGTTTCATTGAGGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATGTTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCC ATGGTATGAAC AAATTGCCCACTGGTACTTTTACCAACTAaaaaaa ]
[+] EMBL C97954 [ CCAAC AGTCATATGC GGC NCATAGCA ATGGCACTAGCTGGTTNCATGGCTTCAATT GGGNATATNCATTACTT CCAGTCATTC GGTTTCATTGAAGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCNTGTTTTCTGATGTTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCCAATGGTATGAACAAAAa ]
consensusID : consensus_9754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence
[CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCGCCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCGACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGGCCCACGACCTCGGGTCCGCGGCCGTCANCGNAGCGTCGCCTCGCCCTCCTCCGCTTTCTTCGAGGAGCTCGCAANCGCGGGGGTCTTCGAGAGAAACTCAATAGAAANTTGTGCATATAACTATCGGTATGGTAATCTTTGTCCTTTTGGGCTCTTTTTAAGGTAAGAAAATCTNAATTTTTTTTTGGT]
[+] EMBL C74572 [CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCGCCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCGACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGGCCCACGACCTCGGGTCCGCGGCCGTCANCGNAGCGTCGCCTCGCCCTCCTCCGCTTTCTTCGAGGAGCTCGCAANCGCGGGGGTCTTCGAGAGAAACTCAATAGAAANTTGTGCATATAACTATCGGTATGGTAATCTTTGTCCTTTTGGGCTCTTTTTAAGGTAAGAAAATCTNAATTTTTTTTTGGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9754#0 CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCG 60
consensus_9754#1 CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCG 60
************************************************************
consensus_9754#0 CCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCG 120
consensus_9754#1 CCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCG 120
************************************************************
consensus_9754#0 ACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGG 180
consensus_9754#1 ACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGG 180
************************************************************
consensus_9754#0 CCCACGACCTCGGGTCCGCGGCCGTCACCGCAGGCGTCGCCCTCGCCCTCCTCCGCTT-C 239
consensus_9754#1 CCCACGACCTCGGGTCCGCGGCCGTCANCGNAG-CGTCGCC-TCGCCCTCCTCCGCTTTC 238
*************************** ** ** ******* **************** *
consensus_9754#0 TTCGAGGAGCTCGCCAAGCGCGGGG-TCTTCGAGCAGAAACTCAATAGAAAACTTGTGCA 298
consensus_9754#1 TTCGAGGAGCTCGC-AANCGCGGGGGTCTTCGAG-AGAAACTCAATAGAAAN-TTGTGCA 295
************** ** ******* ******** **************** *******
consensus_9754#0 TATAACTATCGGTATGGTATTCTT-GCTCTTTTGGCCTCTTTTCA-GCTCAGGAAGCTAT 356
consensus_9754#1 TATAACTATCGGTATGGTAATCTTTGTCCTTTTGGGCTCTTTTTAAGGTAAGAAAATCTN 355
******************* **** * ******* ******* * * * ** **
consensus_9754#0 GCTCCTTTCCTGGCTGCAGTAGCACCAGGGATTAATATTATAAGGATGCTTCTGCTGGGG 416
consensus_9754#1 AATTTTTTTTTGGT---------------------------------------------- 369
* *** ***
consensus_9754#0 TTAGGAGTAATGAAAAATGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGG 476
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 GAACTTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTC 536
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 TGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATA 596
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 GCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCA 656
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 TATGCAGGCAGCATAGCAATGGCACTAGCTGGTTTCATGGCTTCAATTGGGTATATGCAT 716
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 TACTTCCAGTCATTCGGTTTCATTGAAGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTT 776
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 GTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAAC 836
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 TTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATGTTTACCTTTG 896
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 AAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGT 956
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 TCCAATGGTATGAACAAAATTGCCCACTGGTACTTTTACCAACTAGCATTATGTACTTCC 1016
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 TTGNGAAAAAAANAAACATTATATACTTTGTACAGATTTAGCTAGATATTTGNAGTATGT 1076
consensus_9754#1 ------------------------------------------------------------
consensus_9754#0 CAAAAAAAAAAAAAAAAAAAAAAACGGCCG 1106
consensus_9754#1 ------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||