These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9754#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1106 fasta sequence [CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCGCCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCGACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGGCCCACGACCTCGGGTCCGCGGCCGTCACCGCAGGCGTCGCCCTCGCCCTCCTCCGCTTCTTCGAGGAGCTCGCCAAGCGCGGGGTCTTCGAGCAGAAACTCAATAGAAAACTTGTGCATATAACTATCGGTATGGTATTCTTGCTCTTTTGGCCTCTTTTCAGCTCAGGAAGCTATGCTCCTTTCCTGGCTGCAGTAGCACCAGGGATTAATATTATAAGGATGCTTCTGCTGGGGTTAGGAGTAATGAAAAATGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGGGAAC-TTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCA-ATGGCACTAGCTGGTTTCATGGCTTCAATT-GGGTATATGCATTACTT-CCAGTCATTC-GGTTTCATTGAAGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATGTTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCCAATGGTATGAACAAAATTGCCCACTGGTACTTTTACCAACTAGCATTATGTACTTCCTTGNGAAAAAAANAAACATTATATACTTTGTACAGATTTAGCTAGATATTTGNAGTATGTCAAAAAAAAAAAAAAAAAAAAAAACGGCCG] [+] EMBL AK061265 [CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCGCCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCGACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGGCCCACGACCTCGGGTCCGCGGCCGTCACCGCAGGCGTCGCCCTCGCCCTCCTCCGCTTCTTCGAGGAGCTCGCCAAGCGCGGGGTCTTCGAGCAGAAACTCAATAGAAAACTTGTGCATATAACTATCGGTATGGTATTCTTGCTCTTTTGGCCTCTTTTCAGCTCAGGAAGCTATGCTCCTTTCCTGGCTGCAGTAGCACCAGGGATTAATATTATAAGGATGCTTCTGCTGGGGTTAGGAGTAATGAAAAATGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGGGAAC TTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCA ATGGCACTAGCTGGTTTCATGGCTTCAATT GGGTATATGCATTACTT CCAGTCATTC GGTTTCATTGAAGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATGTTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCCAATGGTATGAACAAAATTGCCCAC ] [+] EMBL CA767039 [ TTCAGCTCAGGAAGCTATGCTCCTTACCTGGCTGCAGTAGCACCAGGGATTAATATTATAAGGATGCTTCTGCTGGGGTTAGGAGTAATGAAAAATGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGGGAAC TTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAACAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCA ATGGCACTAGCTGGTTTCATGGCTTCAATT GGGTATATGCATTACTT CCAGTCATTC GGTTTCATTGAGGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCCGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGNTTTCTGATGGTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAANGAATATTTCGATAAGGAACTTTGGTTCCAATGGTATGAACAAAATTGCCCACTGGTACTTTTACCAACTAGCATTATGTACTTCCTTGNGAAAAAAANAAACATTATATACTTTGTACAGATTTAGCTAGATATTTGNAGTATGTCAAAAAAAAAAAAAAAAAAAAAAACGGCCG] [+] EMBL OS0191A [ TGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGGGAAC TTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCA ATGGCACTAGCTGGTTTCATGGCTTCAATTGGGGTATATGCATTACTTNCCAGTAATTCGGGTTTCATT ] [+] EMBL BI810540 [ AGCTATGGTAAAATCAATGA CCGATCTGGAGACCCGAGGGAACTTTCTCAAGGGTCCCCTGTATTATGCTACCACTATAACTTTT CCACTTCTATATTCTGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATAGCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCATATGCAGGCAGCATAGCACATGGCACTAGCTGGTTTCATGGCTTCAATT GGGTATATGCATTACTT CCAGTCATTC GGTTTCATTGAGGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATGTTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCC ATGGTATGAAC AAATTGCCCACTGGTACTTTTACCAACTAaaaaaa ] [+] EMBL C97954 [ CCAAC AGTCATATGC GGC NCATAGCA ATGGCACTAGCTGGTTNCATGGCTTCAATT GGGNATATNCATTACTT CCAGTCATTC GGTTTCATTGAAGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTTGTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAACTTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCNTGTTTTCTGATGTTTACCTTTGAAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGTTCCAATGGTATGAACAAAAa ] consensusID : consensus_9754#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 369 fasta sequence [CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCGCCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCGACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGGCCCACGACCTCGGGTCCGCGGCCGTCANCGNAGCGTCGCCTCGCCCTCCTCCGCTTTCTTCGAGGAGCTCGCAANCGCGGGGGTCTTCGAGAGAAACTCAATAGAAANTTGTGCATATAACTATCGGTATGGTAATCTTTGTCCTTTTGGGCTCTTTTTAAGGTAAGAAAATCTNAATTTTTTTTTGGT] [+] EMBL C74572 [CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCGCCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCGACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGGCCCACGACCTCGGGTCCGCGGCCGTCANCGNAGCGTCGCCTCGCCCTCCTCCGCTTTCTTCGAGGAGCTCGCAANCGCGGGGGTCTTCGAGAGAAACTCAATAGAAANTTGTGCATATAACTATCGGTATGGTAATCTTTGTCCTTTTGGGCTCTTTTTAAGGTAAGAAAATCTNAATTTTTTTTTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9754#0 CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCG 60 consensus_9754#1 CGCTACCCTCATCCGCGCCGCGCTCTCGCCCGCAATCGAGGCCGCCCCTCTCGCCGCCCG 60 ************************************************************ consensus_9754#0 CCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCG 120 consensus_9754#1 CCGCCGCCGCCGCCGCCTCCTGCTCCTTCGACCTGCCCCGGCCCCGCCGCCTCGTCGCCG 120 ************************************************************ consensus_9754#0 ACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGG 180 consensus_9754#1 ACGGGAGCCGGAGGAAGGGGACGATGGCTGCGGCGATCCCGCCCGAGGCAAGCGGCCTGG 180 ************************************************************ consensus_9754#0 CCCACGACCTCGGGTCCGCGGCCGTCACCGCAGGCGTCGCCCTCGCCCTCCTCCGCTT-C 239 consensus_9754#1 CCCACGACCTCGGGTCCGCGGCCGTCANCGNAG-CGTCGCC-TCGCCCTCCTCCGCTTTC 238 *************************** ** ** ******* **************** * consensus_9754#0 TTCGAGGAGCTCGCCAAGCGCGGGG-TCTTCGAGCAGAAACTCAATAGAAAACTTGTGCA 298 consensus_9754#1 TTCGAGGAGCTCGC-AANCGCGGGGGTCTTCGAG-AGAAACTCAATAGAAAN-TTGTGCA 295 ************** ** ******* ******** **************** ******* consensus_9754#0 TATAACTATCGGTATGGTATTCTT-GCTCTTTTGGCCTCTTTTCA-GCTCAGGAAGCTAT 356 consensus_9754#1 TATAACTATCGGTATGGTAATCTTTGTCCTTTTGGGCTCTTTTTAAGGTAAGAAAATCTN 355 ******************* **** * ******* ******* * * * ** ** consensus_9754#0 GCTCCTTTCCTGGCTGCAGTAGCACCAGGGATTAATATTATAAGGATGCTTCTGCTGGGG 416 consensus_9754#1 AATTTTTTTTTGGT---------------------------------------------- 369 * *** *** consensus_9754#0 TTAGGAGTAATGAAAAATGAAGCTATGGTAAAATCAATGAGCCGATCTGGAGACCCGAGG 476 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 GAACTTCTCAAGGGTCCACTGTATTATGCTACCACTATAACTTTTGCCACTTCTATATTC 536 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 TGGAGAACCTCTCCAATCGCTATAGCCCTTATTTGCAACTTATGTGCTGGGGACGGAATA 596 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 GCAGACATAGTGGGGAGACGTCTTGGCCAAGAAAAGCTTCCATACAACCCCAACAAGTCA 656 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 TATGCAGGCAGCATAGCAATGGCACTAGCTGGTTTCATGGCTTCAATTGGGTATATGCAT 716 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 TACTTCCAGTCATTCGGTTTCATTGAAGAAAGCTGGTCCTTGGCTTTTGGCTTCCTTGTT 776 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 GTTTCTGTAACTGCAGCACTTGTAGAGTCCCATCCCATCAGCACACATTTGGATGACAAC 836 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 TTGACTGTTCCTTTAACATCATTCCTAGTTGGTAGCCTTGTTTTCTGATGTTTACCTTTG 896 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 AAGGAAAATTACTGGGAGATCTTCTGACATGTAAGGAATATTTCAATAAGGAACTTTGGT 956 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 TCCAATGGTATGAACAAAATTGCCCACTGGTACTTTTACCAACTAGCATTATGTACTTCC 1016 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 TTGNGAAAAAAANAAACATTATATACTTTGTACAGATTTAGCTAGATATTTGNAGTATGT 1076 consensus_9754#1 ------------------------------------------------------------ consensus_9754#0 CAAAAAAAAAAAAAAAAAAAAAAACGGCCG 1106 consensus_9754#1 ------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||