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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9756#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 845 fasta sequence
[GAGGGCTCTCCCACAACAGCTTGGACACGAGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCT-GCT-TGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCT-TTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTT-CCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACA-CA-AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATC-CAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAAAATTTCTGGAGACTCATCCACCCTTAACAAAAAA]
[+] EMBL BI813523 [GAGGGCTCTCCCACAACAGCTTGGACACGAGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCT GCT TGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCT TTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTT CCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC ACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATC CAAAAAaaaaa ]
[+] EMBL BI811060 [ AAAGAGCTCTCCCTTGTAGCACCAA CTGGCTGTGAAGTCGGTGAAGGACCTTCCAGCCCTATCTGGTTTCCTGTTCGGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTGTTGAGGAGTTA GCA TTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGA CAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACACCACAGGTTGTTAATCTTGAAGAATTTGGGCTGT CAGTCACTTG ]
[+] EMBL BM419487 [ CGTGGCCTAGAGAGTGAGATGTGAAGACCCNACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATATCNCAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAAAA ]
[+] EMBL BI813328 [ ctgCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACA CA AGGTTGTTAATCTTGAAGAATTT GGCTGT CAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTATTGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAA CAAAATATC CAAAAAGGGAAAATGTCCAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTCATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGTAGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCGGAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAGATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTTGTGGAAACATTTCTGGAGACTCATCCACCCTTAACAAAAAA]
consensusID : consensus_9756#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 556 fasta sequence
[TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCTTTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC-AATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC-ACTAAAAGACAGTAGATTGGTAGAGACACAAGGTAAGGGCATTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAAAAA]
[+] EMBL BQ907314 [TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCTTTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC AATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCC ACTAAAAGACAGTAGATTGGTAGAGACACAAGGTAAGGGCATTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAA ]
[+] EMBL BI812061 [ AGCTGAGGGCTCTCCCACACAGCTTGGACACGAGGCCACCCGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTGAAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGGGTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCAAATTTGAGCTGTGTTGAGGAGTTAGGCAGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCACCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGAGAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACAC AGGTAAGGGC TTGGATTTGTATTTGTTGATACATATTTTTATTCTATCGTTATCTAAAATAGTGGAAACATATTTTAATTTCAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9756#0 ------------------------------------------------------------
consensus_9756#1 TGGAACCCCTGTGACCGGAAAAGGGGGAACCTCATTTCCAAGGTTGTGTGTCTGCCCTCT 60
consensus_9756#0 -----------------------------------GAGGGCTCTCCCACAACAGCTTGGA 25
consensus_9756#1 TTGAAGAGGTTGGACATTGATAACTGCCCCAAGCTGAGGGCTCTCCCACA-CAGCTTGGA 119
*************** *********
consensus_9756#0 CACGAG-CCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTG 84
consensus_9756#1 CACGAGGCCACCAGTTTGAAAGAGCTCTCCCTTGTAGCAGCAAGCTGCTTGAAGTCGGTG 179
****** *****************************************************
consensus_9756#0 AAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGG 144
consensus_9756#1 AAGGACCTTCCATCCCTATCTGGTTTCCTTTCTGTTTGTAGATGTGAAGGCCTGGAGAGG 239
************************************************************
consensus_9756#0 GTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCCCAATTTGAGCTGTG 204
consensus_9756#1 GTTACAGAACTTCCCAAGTGAGAAAGCTGTTTGTAAGTGTTTGTCC-AATTTGAGCTGTG 298
********************************************** *************
consensus_9756#0 TTGAGGAGTTAGGCACGTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCA 264
consensus_9756#1 TTGAGGAGTTAGGCA-GTTTGGAGCAGCTATGGTTGGATGTGAATATGGAGGACTCATCA 357
*************** ********************************************
consensus_9756#0 CCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGA 324
consensus_9756#1 CCGTGGGTGCATGGGCTTCGAGAGCAGTACCGCCACCTGGATGTCTACACGTGGCCTAGA 417
************************************************************
consensus_9756#0 GAGTGAGATGTGAAGACCCAACTAAAAGACAGTAGATTGGTAGAGACACAAGGTTGTTAA 384
consensus_9756#1 GAGTGAGATGTGAAGACCCA-CTAAAAGACAGTAGATTGGTAGAGACACAAGGT------ 470
******************** *********************************
consensus_9756#0 TCTTGAAGAATTTGGGCTGTGCAGTCACTTGTAATATGTATTTTTGTTTTACCTAGTTAT 444
consensus_9756#1 -----AAGGGCATTGGATTTGTATTTGT---TGATACATATTTTTATTCTATC--GTTAT 520
*** * ** * ** * * * *** ******* ** ** * *****
consensus_9756#0 TGGTCTTTGAAATATTAAAAAAATGTTATTTTTTAAAAAAAATAAATAAAACCAAAATAT 504
consensus_9756#1 C------TAAAATAGTGGAAACATATTTTAATTTCAAAAAAA------------------ 556
* ***** * *** ** ** * *** *******
consensus_9756#0 CCAAAAAGGGAAAATGTCAAAAAAAATATTTTTTCTTTAGCTCTTGTAAAATATATTGTC 564
consensus_9756#1 ------------------------------------------------------------
consensus_9756#0 ATGTTTCGTTAGATTTTGCGTGTGTGTTTCTTTTCTTTTTATTTTTTATTGTAGGTGTGT 624
consensus_9756#1 ------------------------------------------------------------
consensus_9756#0 AGGTAACTCCGCCTATGTCATCGTAGGTATAACTAAATGACATAGCCGGTCCCAAGCCCG 684
consensus_9756#1 ------------------------------------------------------------
consensus_9756#0 GAAAAAGGAGGAGAGGATAGTTTGGTATAGATGTGTGTTGAAATGATGCTCCGTTGCTAG 744
consensus_9756#1 ------------------------------------------------------------
consensus_9756#0 ATCATTGGGAATTTTCTGCACTTTTATTAGATTAATTTCATTTTCAGTGATGGAATAGTT 804
consensus_9756#1 ------------------------------------------------------------
consensus_9756#0 GTGGAAAAATTTCTGGAGACTCATCCACCCTTAACAAAAAA 845
consensus_9756#1 -----------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||