These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 747 fasta sequence [TTGTGAAGTCATCCATCAGGTACTGCACCGCAGCAGGTTTTCTACCGTATGATTCAGTTTAGCCACTCATAGATGCGCGTGTTCACACGCAAAGATA-TACTCACTGTGTGTTATGTAAGAGACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTCCTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCTGCAACACTTACTTGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGATGATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCTCATAGTTTGTAAACTAAATAGCAACGCTTTTTTGATTAAGCTGAACCTACCAAATTGGAGGTAAAGAGGCATTTGGATAGAATCCAAACTGTATAGTTCAGAACTTCAAAATTTCAAATGCATGATTGCCAATTTTTGTCAATAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCCTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGA] [+] EMBL BI811950 [TTGTGAAGTCATCCATCAGGTACTGCACCGCAGCAGGTTTTCTACCGTATGATTCAGTTTAGCCACTCATAGATGCGCGTGTTCACACGCAAAGATA TACTCACTGTGTGTTATGTAAGAGACCCGCAAAGATATATTCACTGTGTGTTATGTAAaaaaaaaa ] [+] EMBL CA998846 [ ACACGCAAAGATAGTACTCACTGTGTGTTATGTAAGAGACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTCCTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCTGCAACACTTACTTGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGATGATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCTCATAGTTTGTAAACTAAATAGCAACGCTTTTTTGATTAAGCTGAACCTACCAAATTGGAGGTAAAGAGGCATTTGGATAGAATCCAAACTGTATAGTTCAGAACTTCAAAATTTCAAATGCATGATTGCCAATTTTTGTCAATAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCCTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGA] [+] EMBL CA998097 [ ACACGCAAAGATA TACTCACTGTGTGTTATGTAAGAGACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTCCTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCTGCAACACTTACTTGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGATGATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCTCATAGTTTGTAAACTAAATAGCAACGCTTTT ] consensusID : consensus_9761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 712 fasta sequence [GTTCATCATGTAACACACCTTTTTCACTGCATCATCCATTGGTGTGTCAATAGCACAGATAAAGCAGCTAGCAGAC-GAGACAAGGGGATATGCCAGATGGCTGGAAAAGCACTATGATCTGAAGTTTGTGAAGTCATCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCTTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGCCTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAAAGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTACTTCAGATTGGCTCCTAGATAGGAACAAGAAAAGAGAGTAGTCATGGAATAAAG] [-] EMBL CB627779 [GTTCATCATGTAACACACCTTTTTCACTGCATCATCCATTGGTGTGTCAATAGCACAGATAAAGCAGCTAGCAGACAGATCCAAGGAGATATGCCAGATGGCTGGAAAAGCACTATGATCTGAAGTTTGTGAAGTCATCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCTTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGCCTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAAAGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTACTTCAGATTGGCTCCTAGATAGGAACAAGAAAAGAGAGTAGTCATGGAATAAAG] [-] EMBL CA760970 [ gGAC GAGACAAGGGGATATGCCAGATGGCTGGAAAAGCACTATGATCTGAAGTTTGTGAAGTCATCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCTTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGCCTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAAAGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAAAAAaaaaaaa ] [+] EMBL CA765147 [ GAC GAGACAAGGGGATATGCCAGATGGCTGGAAAAGCACTATGATCTGAAGTTTGTGAAGTC TCCATCAGATTGATAAATCTTGGATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTCTTCTTGATCGTTCTAACTGTCCAAGCTCAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTAACAACTGATTTATTTTGGACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAGAAGCAAGAATCATATACAATTTAATTTCCTTGGATGCCTGCAGGTAGGATGTGGAATTATTGAGCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAGACAGCCATGCCTTCTACTGACTTGACAACAATATATGTCCTTTTCCACACAAAAGATGTGCTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9761#0 TTGTGAAGTCATCCATCAGGTACTGCACCGCAGCAGGTTTTCTACCGTATGATTCAGTTT 60 consensus_9761#1 ----------GTTCATCATGTAACACACC--------TTTTTCACTGCATCATCCA--TT 40 * ***** *** **** **** ** * ** ** ** ** consensus_9761#0 AGCCACTCATAGATGCGCGTGTTCACACGCAAAGATATACTCACTGTGTGTTATGTAAGA 120 consensus_9761#1 GGTGTGTCAATAGCACAGATAAAGCAGCTAGCAGACGAG---ACAAGGGGATATGCCAGA 97 * *** * * * *** ** * * **** *** consensus_9761#0 GACCCGCAAAGATATATTCACTGTGTGTTATGTAAGAGACACTTGTTTGATACCATGGTC 180 consensus_9761#1 TGGCTGGAAAAGCAC-TATGATCTGAAGTTTGTGA-AGTCATCCATCAGAT-TGATAAAT 154 * * *** * * * ** * *** * ** ** * *** ** consensus_9761#0 CTTATCCACCTGCTGCTTCTCTTAGTTCGATGCTACAAAAGTCCATAGTTTTGCAATTCT 240 consensus_9761#1 CTTG--GATGTGAGAGAACTGTTGGATGCTTGAAAGAATAATCGCAAGGCACAGAAGTC- 211 *** * ** ** ** * * ** * ** * ** ** ** ** consensus_9761#0 GCAACACTTACT-TGAGTATGATTCTCATTGGTTTGTTTCTGCCGTATCTGTTCGTCGAT 299 consensus_9761#1 ATATCATTGGGAGTGAATAAAGCTACGAAAGATACTGACTGGATAAAGCTATATATGAAA 271 * ** * *** ** * * * * * * ** * * * consensus_9761#0 GATTTTTATTGGATATAGTTGTTGAGGTTCATCATGGTATGTGCTGATAGCTAGTATGCT 359 consensus_9761#1 GATACTTTGGTAAGACAGT-----AAACTCTTCTTGAT-CGTTCTAACTGTC--CAAGCT 323 *** ** * * *** * ** ** ** * ** ** * * * *** consensus_9761#0 CATAGTTTGTAAACTAAATAGCAACGCTTTTTTGATTAAGC-TGAACCTACCAAATTGGA 418 consensus_9761#1 CAGAGATTGCAACATGGAAGAACATGTAACAGTTTTTAGCTATCAACTGATTTATTTTGG 383 ** ** *** ** * * * * * *** * *** * * ** * consensus_9761#0 GGTAAAGAGGCATTTGGATAGAATCCAA-ACTGTATAGTTCAGAACTTCAAA-ATTTCAA 476 consensus_9761#1 ACGATCACTGTTCTCTTCTGGAGTTTGGGAGGGCAGAATATACAACCATGGATAGTGAAG 443 * * * * ** * * * * * * * *** * * * * consensus_9761#0 ATGCATGATTGCCAATTTTTGTCAATAGATTGATAAATCTTGGATGTGAGAGAACTGTTG 536 consensus_9761#1 AAGCAAGAATCATATACAATTTAATTTCCTTG--GATGCCTGCAGGTAGGA----TGTGG 497 * *** ** * * * * * * *** * * ** * ** ** *** * consensus_9761#0 GATGCTTGAAAGAATAATCGCAAGGCACAGAAGTCATATCATTGGGAGTGAATAAAGCTA 596 consensus_9761#1 AATTATTGA--GCAAGGTGACCAGCCATACTTGCCCTTTTCTACTGACTTAG-ACAGCCA 554 ** **** * * * * ** ** * * * * * * ** * * * *** * consensus_9761#0 CGAAAGATACTGACTGGATAAAGCTATATATGAAAGATACTTTGGTAAGACAGTAAACTC 656 consensus_9761#1 TGCCTTCTACTGACTTGACAA--CAATATATG-----TCCTTTTCCACACAAAAGATGTG 607 * ******** ** ** * ******* * **** * * * * consensus_9761#0 TTCCTGATCGTTCTAACTGTCCAAGCTCAGAGATTG-CAACATGGAAG--AACATGTAAC 713 consensus_9761#1 CTCATATTCAGGCTATTTATAATAGATGAAAATATGTCAACAAGATTCCTACTTCAGATT 667 ** * ** *** * * ** * * * ** ***** * * * consensus_9761#0 AGTTTTTAGCTATCAACT--------GATTTATTTTGGACGA--- 747 consensus_9761#1 GGCTCCTAGATAGGAACAAGAAAAGAGAGTAGTCATGGAATAAAG 712 * * *** ** *** ** * * **** * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||