These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9762#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1251 fasta sequence [TCCCCATCCATCACGCGAGGCGCCGCCTCCGCCTCCGGCGACCCCCATCCATCACGCGACCGCCGCTTCGTCGGCATCCTCCCACCGCATCCATCCTGAAGAAGATCATCGTCAAAACATGTCGCTCATTTCGAAGCTGCGGTTGATCACTGTGGATGTCACCGGTACTCTGCTTGCCTACAAAGGGCAGCTTGGTGATTACTACTGTATGGCAGCTAAGGCTGCTGGGAAGCCATGTCCTGACTACCAGCGAATGCATGAGGGCTTCAAGCTTGCATACACCGAGATGGCAAGGCAATACCCATGCTTTGGATTTGCAGCGAAGATGCCGAATATCGACTGGTGGAGGATGTGCGTCAAGGATTCTTTTGTTAAGGCTGGTTATGAGTATGACGAGGAGACATTTGAGAAGATTTTCAAACGGATTTACTCTTCTTTTGGCTCGTCTGCTCCGTACTCGGTATTCCCTGATGCGCAGCCCTTCATGAGGTGGCTTCGCGGGAAGGGGCTCACGGTTGGAATTGTCAGCAACGCAGAATACCGTTACAAAGACGTCATCTTGCCTGCTCTAGGACTGAACCAGGGCTCCGAGTGGGACTTTGGGGTGTTCTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCA-GAAGAGG-CGC-TTCACATAGGCGAC-AGCATGCGCAAGGACTACACCCCTGCACGGAGCATC-GGAATGCACGCGCTGCTTCTGGACC-GATTCAAGACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGC-AACTGTGCTCCCTGACCTGGTAGCTGCTCAGGAGTGG-CTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAGAAATGTGCCA-TTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATAA---AAGCAGGGCAATTTCAGTTCTGTTTGTCATTCTATTCCCAAAAAAAAAA] [+] EMBL AK101330 [TCCCCATCCATCACGCGAGGCGCCGCCTCCGCCTCCGGCGACCCCCATCCATCACGCGACCGCCGCTTCGTCGGCATCCTCCCACCGCATCCATCCTGAAGAAGATCATCGTCAAAACATGTCGCTCATTTCGAAGCTGCGGTTGATCACTGTGGATGTCACCGGTACTCTGCTTGCCTACAAAGGGCAGCTTGGTGATTACTACTGTATGGCAGCTAAGGCTGCTGGGAAGCCATGTCCTGACTACCAGCGAATGCATGAGGGCTTCAAGCTTGCATACACCGAGATGGCAAGGCAATACCCATGCTTTGGATTTGCAGCGAAGATGCCGAATATCGACTGGTGGAGGATGTGCGTCAAGGATTCTTTTGTTAAGGCTGGTTATGAGTATGACGAGGAGACATTTGAGAAGATTTTCAAACGGATTTACTCTTCTTTTGGCTCGTCTGCTCCGTACTCGGTATTCCCTGATGCGCAGCCCTTCATGAGGTGGCTTCGCGGGAAGGGGCTCACGGTTGGAATTGTCAGCAACGCAGAATACCGTTACAAAGACGTCATCTTGCCTGCTCTAGGACTGAACCAGGGCTCCGAGTGGGACTTTGGGGTGTTCTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCA GAAGAGG CGC TTCACATAGGCGAC AGCATGCGCAAGGACTACACCCCTGCACGGAGCATC GGAATGCACGCGCTGCTTCTGGACC GATTCAAGACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGC AACTGTGCTCCCTGACCTGGTAGCTGCTCAGGAGTGG CTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAGAAATGTGCCA TTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATAA AAGCAGGGCAATTTCAGT ] [+] EMBL AK060153 [TCCCCATCCATCACGCGAGGCGCCGCCTCCGCCTCCGGCGACCCCCATCCATCACGCGACCGCCGCTTCGTCGGCATCCTCCCACCGCATCCATCCTGAAGAAGATCATCGTCAAAACATGTCGCTCATTTCGAAGCTGCGGTTGATCACTGTGGATGTCACCGGTACTCTGCTTGCCTACAAAGGGCAGCTTGGTGATTACTACTGTATGGCAGCTAAGGCTGCTGGGAAGCCATGTCCTGACTACCAGCGAATGCATGAGGGCTTCAAGCTTGCATACACCGAGATGGCAAGGCAATACCCATGCTTTGGATTTGCAGCGAAGATGCCGAATATCGACTGGTGGAGGATGTGCGTCAAGGATTCTTTTGTTAAGGCTGGTTATGAGTATGACGAGGAGACATTTGAGAAGATTTTCAAACGGATTTACTCTTCTTTTGGCTCGTCTGCTCCGTACTCGGTATTCCCTGATGCGCAGCCCTTCATGAGGTGGCTTCGCGGGAAGGGGCTCACGGTTGGAATTGTCAGCAACGCAGAATACCGTTACAAAGACGTCATCTTGCCTGCTCTAGGACTGAACCAGGGCTCCGAGTGGGACTTTGGGGTGTTCTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCA GAAGAGG CGC TTCACATAGGCGAC AGCATGCGCAAGGACTACACCCCTGCACGGAGCATC GGAATGCACGCGCTGCTTCTGGACC GATTCAAGACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGC AACTGTGCTCCCTGACCTGGTAGCTGCTCAGGAGTGG CTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAGAAATGTGCCA TTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATAA AAGCA ] [+] EMBL BI813368 [ CGCGCCATGAAGAGGCCGCTTTCACATAGCCGACAAGCATGCGCAAGG TACACCCCTGCACGGAGCATCGGGAAT CACGCGCTGCTTCTGGACCAGATTCAAGACC CCGAT CTGAGAGCTGGAGGAATTCTGGAGCAAACTGTGCTCCCTGACCTGGTA CTGCTCAGGAGTGGTCTCACCAAGAATCTCAAGGATGACCCAGTAGCAGCTGAAC AAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGA GCAAAAGAAATGTGCCA TTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAA CAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCAaaaaa ] [+] EMBL BI812105 [ CTGCTTCTGGACC GATTCAAG CCGCCGAT CTGAGAGCTGGAGGAAGTCTGGAGC AACTGTGCTCCCTGACCTGGTA CTGCTCAGGAGTGG CTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTG ACCAAATGTCTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGGCAAAAGAAATGTGCCACTTGATGTATTTGTATTGTACTGATGGAATAGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGATGCTGATTGCTGAATATGTCAAGC AATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCATGAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAATAAAAGAAGCAGGGC ATTTCAGTTCTGTTTGTCATTCTATTCCCAAAAAAAAAA] consensusID : consensus_9762#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 236 fasta sequence [GGCTCCGAGTGGGACTTTGGGGTGTACTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCAGAAGAGGCGCTTCACATAGGCGACAGCTTGCGCAAGGACTACACCCCTGCACGGAACATTTTAATGCACGCACCGCTTCTGGACCAATACAACACCGCCTATGCTGCGATCTCCAGGAACCCTATATCATT] [+] EMBL CA758089 [GGCTCCGAGTGGGACTTTGGGGTGTACTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGCACTGGAAATGGCGGGCAAGGTCGCGCCAGAAGAGGCGCTTCACATAGGCGACAGCTTGCGCAAGGACTACACCCCTGCACGGAACATTTTAATGCACGCACCGCTTCTGGACCAATACAACACCGCCTATGCTGCGATCTCCAGGAACCCTATATCATT] consensusID : consensus_9762#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 149 fasta sequence [CCCCCAAAAAGGGGGGTTTTTCCCCCGGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGCAAAGAAATGTCCATTGATGTATTTGTATTGTACTGATGGAATAGTTTATTGATGTTCTTGCTGCTGGATTATG] [+] EMBL BM037915 [CCCCCAAAAAGGGGGGTTTTTCCCCCGGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTTATGAAACGAGGGAGCAAAGAAATGTCCATTGATGTATTTGTATTGTACTGATGGAATAGTTTATTGATGTTCTTGCTGCTGGATTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9762#0 TCCCCATCCATCACGCGAGGCGCCGCCTCCGCCTCCGGCGACCCCCATCCATCACGCGAC 60 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 CGCCGCTTCGTCGGCATCCTCCCACCGCATCCATCCTGAAGAAGATCATCGTCAAAACAT 120 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 GTCGCTCATTTCGAAGCTGCGGTTGATCACTGTGGATGTCACCGGTACTCTGCTTGCCTA 180 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 CAAAGGGCAGCTTGGTGATTACTACTGTATGGCAGCTAAGGCTGCTGGGAAGCCATGTCC 240 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 TGACTACCAGCGAATGCATGAGGGCTTCAAGCTTGCATACACCGAGATGGCAAGGCAATA 300 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 CCCATGCTTTGGATTTGCAGCGAAGATGCCGAATATCGACTGGTGGAGGATGTGCGTCAA 360 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 GGATTCTTTTGTTAAGGCTGGTTATGAGTATGACGAGGAGACATTTGAGAAGATTTTCAA 420 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 ACGGATTTACTCTTCTTTTGGCTCGTCTGCTCCGTACTCGGTATTCCCTGATGCGCAGCC 480 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 CTTCATGAGGTGGCTTCGCGGGAAGGGGCTCACGGTTGGAATTGTCAGCAACGCAGAATA 540 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 CCGTTACAAAGACGTCATCTTGCCTGCTCTAGGACTGAACCAGGGCTCCGAGTGGGACTT 600 consensus_9762#1 -------------------------------------------GGCTCCGAGTGGGACTT 17 consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 TGGGGTGTTCTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGC 660 consensus_9762#1 TGGGGTGTACTCTGGAATAGTTGGTGTGGAGAAGCCAGATCCAAGTATCTACAGGATTGC 77 consensus_9762#2 --------------------CCCCCAAAAAGGGGGGTTTTTCCCCCGGTCACTGAGCTGA 40 ** * * * ** * ** consensus_9762#0 ACTGGAAATGGCGGGCAAGGTCGCGCCAGAAGAGGCGCTTCACATAGGCGACAGCATGCG 720 consensus_9762#1 ACTGGAAATGGCGGGCAAGGTCGCGCCAGAAGAGGCGCTTCACATAGGCGACAGCTTGCG 137 consensus_9762#2 ATTCCCTCTTGTTTCCTAG-TTATGAAACGAGGGAG----CAAAGAAATGTCCATTGATG 95 * * * * * ** * * * ** * ** * * * * * consensus_9762#0 CAAGGACTACACCCCTGCACGGAGCATCGGAATGCACGCGCTGCTTCTGGACCGATTCAA 780 consensus_9762#1 CAAGGACTACACCCCTGCACGGAACATTTTAATGCACGCACCGCTTCTGGACCAATACAA 197 consensus_9762#2 TATTTG-TATTGTACTG-ATGGAATAGTTTATTGATGTTCTTGCTGCTGGATTATG---- 149 * ** *** * *** * * ** *** ***** consensus_9762#0 GACCGCCGATGCTGAGAGCTGGAGGAAGTCTGGAGCAACTGTGCTCCCTGACCTGGTAGC 840 consensus_9762#1 CACCGCCTATGCTGCGATCTCCAGGAACCCTATATCATT--------------------- 236 consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 TGCTCAGGAGTGGCTCAGCAAGAATCTCAAGGATGAGCCAGTAGCAGCTGAACAAAATGT 900 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 CTGACCTTAGAAAATTCAGTTCCCCTGTCACTGAGCTGAATTCCCTCTTGTTTCCTAGTT 960 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 ATGAAACGAGGGAGGCAAAAGAAATGTGCCATTGATGTATTTGTATTGTACTGATGGAAT 1020 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 AGGTTATGTGATGGTTCTTGGCTGCTGGATTATGTAAGCTGTTTGGTGTTGAACTGTTGA 1080 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 TGCTGATTGCTGAATATGTCAAGCAAATCAGTGTGGCAGAGCATTGTTGTAGTCTCCCAT 1140 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 GAACTGTGTTTCAGCGAAGAAAACTAGTTTTGTTTGGCATCTTCGCCTGTCTGAAGCAAT 1200 consensus_9762#1 ------------------------------------------------------------ consensus_9762#2 ------------------------------------------------------------ consensus_9762#0 AAAAGCAGGGCAATTTCAGTTCTGTTTGTCATTCTATTCCCAAAAAAAAAA 1251 consensus_9762#1 --------------------------------------------------- consensus_9762#2 --------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||