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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9766#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 1377 fasta sequence
[CTGAAGGAGTAGAAAAGGACCGAGCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGG-TTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATAT--------AGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCCATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTTATGCCTGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGAGCAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACAAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCAATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCAAGCTTTTTGTGCACTTCCAACTAACTCGGATATTTATTTACGTAGGAGTACACTACAGGTATTTTTGTTTAATTGTTTGGCGAGACTGAAAATTTTGTCTGGACATGACAGTGAGATTAACAGTGGTAAATTCNNCAAAAAA]
[+] EMBL CF278810 [CTGAAGGAGTAGAAAAGGACCGAGCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGG TTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATAT AGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCAT ]
[+] EMBL AK066553 [ GCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGGTTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTC TCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATGTATGTAGAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCCATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTTATGCCTGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGAGCAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACAAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCCGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAA ]
[+] EMBL CA767356 [ GTATATGGTGTTGATGTTGGCTATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAACTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTTATGCCTGCTGTAGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGAGCAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGAT AAGGGCGCGGAAGGGAACAAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCAATGCTTTCCTAATTCCT ]
[-] EMBL CF278811 [ AGTGCAAGAATTGCAGCCGGAGGAAGCAAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCAAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCAATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCAAGCTTTTTGTGCACTTCCAACTAACTCGGATATTTATTTACGTAGGAGTACACTACAGGTATTTTTGTTTAATTGTTTGGCGAGACTGAAAATTTTGTCTGGACATGACAGTGAGATTAACAGTGGTAAATTCNNCAAAAAA]
consensusID : consensus_9766#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 818 fasta sequence
[CGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGGTTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCTATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTATGATTTGGTGCTGCCTTTTTAATGTCTGCATGATTGTCCACTTGCACAAGTCCTTTTAGCAGAGCTCTTATAATATGTCACT]
[+] EMBL CB677622 [CGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGGTTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCTATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGGTATGATTTGGTGCTGCCTTTTTAATGTCTGCATGATTGTCCACTTGCACAAGTCCTTTTAGCAGAGCTCTTATAATATGTCACT]
consensusID : consensus_9766#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 494 fasta sequence
[TCTCTTGGTATATCCCTGCTGTAGTCCAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGACAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACACAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCCAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCACAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCACAGCTTTTTGTGCACTTCCCAAAAAAAAAA]
[+] EMBL BI812443 [TCTCTTGGTATATCCCTGCTGTAGTCCAAGTAATGAAGACAGACTCGACATTGATTACACTTATCAAACCTCAATTTGAAGCTCGTCGATCTCAGGTAGGAGGTGGTGGGATTGTTCGGGACCCTCTGGTTCATAAAGAGGTGCTAGATAGGATAATTTCAGGCGTAGACAGTTTGGATTCTGCAACAAGGGCTGGATTGAATCTCCGATAAAGGGCGCGGAAGGGAACACAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGAGGAAGCCAAGTCAACATGATTATTTGTACCTAATGCCATATCTAGTTCACATAGAATAGCTGGAGAATACTTTCTGATCTTTTTACCACAGGATGTTACTTCAAATTGGCATAATGTGATGTGAGAATCCCTTTTGCATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAAAACCACAGCTTTTTGTGCACTTCCCAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9766#0 CTGAAGGAGTAGAAAAGGACCGAGCGAGAGGAGAGAAGGGGCGCCGCCGCCGCCGCCGCC 60
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 GCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAGCATATATATATCTCGTCGGCGAACT 120
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 GAGATAGGGTAACTGAGATTAGGGTTTGGCTCGGAGGGGGAGTGGAGCGGGAGGAGGAGG 180
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 AGGAGGCGAGGCGATGATGATGGTGGCTTCCAGGCTCCGATTCCACCAGCTTAGGCTGAT 240
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 TGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGGGATTTCGCGGCGGTGAGAACCCAAAA 300
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 GCTTCAGCTCGCCAAGAAGAAAAGACGATTGGATGAAGTGTGCCTTGAGAGATTTCAACA 360
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 GTATAGCAGGACGTACATCCAATCATGGATTCTTCAGGGTAAGGTCCTTGTGGATGGAAG 420
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 GGTTGTGAATAAAGCTGGAACACAAGTATCTGACAAGTCGATCATAGAAATCAAGGCTGA 480
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 AATTCCAAAATATAGCTGGTCATAAGCTTGAGGCGGCTATCAAAGAATTTGGTATTGACT 540
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------------------------------------------------------
consensus_9766#0 GTGATGAAAAGGTAGCCCTTGATTCAGGGTTATCCACTGGCGGTTTTACTGACTGTTTAC 600
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 ------------CGCCGCCGCCGCCGCCCGCCATCCGCGCCGCTTCTCCTTCTCCTACAG 48
consensus_9766#0 TCCAACATGGGGCATCACATGTATATGGTGTTGATGTTGGCCATGGACAGGTGGCTGAAA 660
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 CATATATATATCTCGTCGGCGAACTGAGATAGGGTAACTGAGATTAGGGTTTTGGCTCGG 108
consensus_9766#0 AAATTCGAGTGCATGAACGTGTTTCAGTAATTGAACGTACAAATTTAAGATATCTTACTG 720
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 AGGGGGAGTGGAGCGGGAGGAGGAGGAGGAGGCGAGGCGATGATGATGGTGGCTTCCAGG 168
consensus_9766#0 AACTGCCACAGCTGGTTGACTTGGTGACCCTGGATCTGTCATTCATCTCAATTCTCTTGG 780
consensus_9766#2 ----------------------------------------------------TCTCTTGG 8
consensus_9766#1 CTCCGATTCCACCAGCTTAGGCTGATTGGGGTCAGGCCGACCTGCTGCTCTCCGTCCCGG 228
** **
consensus_9766#0 T-TATGCCTGCTGT---AGTCAAAGTAATGAAGACAGACTCGACATTGATTACACTTATC 836
consensus_9766#2 TATATCCCTGCTGT---AGTCCAAGTAATGAAGACAGACTCGACATTGATTACACTTATC 65
consensus_9766#1 GATTTCGCGGCGGTGAGAACCCAAAAGCTTCAGCTCGCCAAGAAGAAAAGACGATTGGAT 288
* * * ** ** * * ** * ** * * ** * * *
consensus_9766#0 AAACCTCAATTTGAAGCTCGTCGATCTCA-GGTAGGAGGTGGTG--------GGATTGTT 887
consensus_9766#2 AAACCTCAATTTGAAGCTCGTCGATCTCA-GGTAGGAGGTGGTG--------GGATTGTT 116
consensus_9766#1 GAAGTGTGCCTTGAGAGATTTCAACAGTATAGCAGGACGTACATCCAATCATGGATTCTT 348
** **** ** * * * **** ** ***** **
consensus_9766#0 CGGGACC---CTCTGGTTCATAAAGAGGTGCTAGATAGGAT--AATTTCAGGCGTAGAGC 942
consensus_9766#2 CGGGACC---CTCTGGTTCATAAAGAGGTGCTAGATAGGAT--AATTTCAGGCGTAGA-C 170
consensus_9766#1 CAGGGTAAGGTCCTTGTGGATGGAAGGGTTGTGAATAAAGCTGGAACACAAGTATCTGAC 408
* ** ** ** ** * *** * *** * ** * * *
consensus_9766#0 AGTTTGGATTCTGCAACAAGGGCTGGATT----GAATCT--CCGATAAAGGGCGCGGAAG 996
consensus_9766#2 AGTTTGGATTCTGCAACAAGGGCTGGATT----GAATCT--CCGATAAAGGGCGCGGAAG 224
consensus_9766#1 AAGTCGATCATAGAAATCAAGGCTGAAATTCCAAAATATAGCTGGTCATAAGCTTGAGGC 468
* * * * ** * ***** * * *** * * * * * ** *
consensus_9766#0 GGA-ACA-AAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGA 1054
consensus_9766#2 GGA-ACACAAGAGTTTCTTGCTTGCTTCCATAGGATCCCAGTGCAAGAATTGCAGCCGGA 283
consensus_9766#1 GGCTATCAAAGAATTTGGTATTGACTGTGATGAAAAGGTAGCCCTTGATTCAGGGTTATC 528
** * **** *** * * ** ** * ** * ** * *
consensus_9766#0 GGAAGCAAAGTCAACATGATTATTTGTACCTA-ATGCCATATCTAGTTCACATAGAATAG 1113
consensus_9766#2 GGAAGCCAAGTCAACATGATTATTTGTACCTA-ATGCCATATCTAGTTCACATAGAATAG 342
consensus_9766#1 CACTGGCGGTTTTAC-TGACTGTTTACTCCAACATGGGGCATCACATGTATATGGTGTTG 587
* * ** *** * *** ** * *** *** * * ** * * *
consensus_9766#0 CTGGAGAATACTTTCTGATCTTTTTACCA---AGGATGTTACTTCAAATTGGCATAATGT 1170
consensus_9766#2 CTGGAGAATACTTTCTGATCTTTTTACCAC--AGGATGTTACTTCAAATTGGCATAATGT 400
consensus_9766#1 ATGTTGGCTATGGACAGGTGGCTGAAAAAATTCGAGTGCATGAACGTGTTTCAGTAATTG 647
** * ** * * * * * * * ** * ** ****
consensus_9766#0 GATGTGAGAATCCCTTTTGCAATGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAA 1230
consensus_9766#2 GATGTGAGAATCCCTTTTGCA-TGCTTTCCTAATTCCTATATCTGTAACAGAAACAGAAA 459
consensus_9766#1 AACGTACAAATTTAAGATATCTTACTGAACTGCCACAGCTGGTTGACTTGGTGACCCTGG 707
* ** *** * * ** ** * * ** * **
consensus_9766#0 AACCA-AGCTTTTTGTGCACTTCCAACTAACTCGGATATTTATTTACGTAGGAGTACACT 1289
consensus_9766#2 AACCACAGCTTTTTGTGCACTTCCCAAAAAAAAAA------------------------- 494
consensus_9766#1 ATCTGTCATTCATCTCAATTCTCTTGGTATGATTTGGTGCTGCCTTTTTAATGTCTGCAT 767
* * * * ** *
consensus_9766#0 ACAGGTATTTTTGTTTAATTGTTTGGCGAGACTGAAAATTTTGTCTGGACATGACAGTGA 1349
consensus_9766#2 ------------------------------------------------------------
consensus_9766#1 GATTGTCCACTTGCACAAGTCCTTTTAGCAGAGCTCTTATAATATGTCACT--------- 818
consensus_9766#0 GATTAACAGTGGTAAATTCNNCAAAAAA 1377
consensus_9766#2 ----------------------------
consensus_9766#1 ----------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||