These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9780#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 993 fasta sequence [CTTCTCGTCGTGCGCCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAACCCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGCGATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGCGGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGTGGTGACGGTGCCTAGC-GGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAAGTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATTCCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCA-ATGG-CCGTGGGTCTCACAAGTC-AAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCA-CGGAAATCA-AAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATCTTGGTTTCAACTGTTCCCCTGTTCTTGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTCTGCAGCAGCAATGAGAAATTACAGTTTTGACAGTGGAAAAAAAAAAAAAAAAAAA] [+] EMBL CF276229 [CTTCTCGTCGTGCGCCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAACCCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGCGATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGCGGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGTGGTGACGGTGCCTAGCGGGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAAGTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATTCCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACAT ] [+] EMBL AK061501 [ TCGTGCGCCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAACCCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGCGATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGCGGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGTGGTGACGGTGCCTAGC GGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAAGTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATTCCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCA ATGG CCGTGGGTCTCACAAGTC AAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCA CGGAAATCA AAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATCTTGGTTTCAACTGTTCCCCTGTTCTTGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTCTGCAGCAGCAATGAGAAATTACAGTTTTGACAGTGG ] [+] EMBL AK102823 [ CCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAACCCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGCGATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGCGGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGAGGAGGAGGTGGTGACGGTGCCTAGC GGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAAGTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATTCCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATCACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGAAGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAATGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCA ATGG CCGTGGGTCTCACAAGTC AAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCA CGGAAATCA AAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATCTTGGTTTCAACTGTTCCCCTGTTCTTGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTCTGCAGCAGCAATGAGAAAT ] [+] EMBL BI813488 [ ACCATCACATAGGCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCGCAAAGCACATGGTCCGCGGGTCTCACAAGTCAAAACCAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCAGCGGAAATCACAAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTCTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGCCCTTGCCTAAaaaaaaa ] [-] EMBL CF276230 [ GCAGCCCAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCA ATGG CCGTGGGTCTCACAAGTC AAACAAGCGTGAAAAGCTTGACTGGAATTTTTTTAGACCA CGGAAATCA AAATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCATTTGTACTCTGTATTTGATTAGCATTTTTTCCTGTTTCGCGAGTTATATTTAAAAAGCTGGTAACCAGTAGTTTATTTACAGTAAAATGTTTGTCCTTGCCTAATTTTGGTTTCAACTGTTCCCCTGTTCTTGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTTTGCAGCAGCAATGAGAAATTACAGTTTTGACAAAGAAAAAAAAAAAAAAAAAAAA] consensusID : consensus_9780#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 229 fasta sequence [TCTTCGCAAAGCCATGGCCCCCGGGTCTCACAAGTCAAACCAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCCCGGAAATCCAAATGAAGTCCGGAGTTAGCGTAGCCCAAACTTTGCTCTTGTACCCCACTTTGTACTCTCTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTAAATCTAGAAAGCTGGTAACCCCGTAGTTTATTTACCAGTAAATGTTTGGT] [-] EMBL CB966192 [TCTTCGCAAAGCCATGGCCCCCGGGTCTCACAAGTCAAACCAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCCCGGAAATCCAAATGAAGTCCGGAGTTAGCGTAGCCCAAACTTTGCTCTTGTACCCCACTTTGTACTCTCTATCTGATTAGCATTTTCTCCTGTTTCGCGAGTAAATCTAGAAAGCTGGTAACCCCGTAGTTTATTTACCAGTAAATGTTTGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9780#0 CTTCTCGTCGTGCGCCTCCTCCCCGCGGCGACGGCTTCCGCGAGCCGCGTAAACCCTAAC 60 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 CCTAAATCGGTAAGCGAAGCAGCGGCAGCGGCAGAGGCGGCGGCGGAGGAGGAAGGTGGC 120 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 GATGGCGGCGAAGCGGGAGCTCTCGAGCACCCTCAGGAACCTCAAGTTTATGCAGCGGGC 180 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 GGCTGTTGCGCAGAAGGTTGAGGAGAAGCCCAAGGTTGAGGCGGCGGCGGCGGCGGCGGA 240 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 GGAGGAGGTGGTGACGGTGCCTAGCGGAGGTGTTGGCTCGTCGGTTAAAGTCGCTCGGAA 300 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 GTGCGTAGTTATCATGGAGGGTAATCCACACCCTGGAGCTGCAAAGGGTCGAATGTCATT 360 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 CCTGAATTTCAACCCATCCATTGATAAATTAACTCAAGAGGCAACGGGTGGCCGCCAATC 420 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 ACAGTTAGCATCACCTAGTAATAATCATCAGGATGGTTCGAATTCCAGCAGAACGGATGA 480 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 AGTATCAAGAACAAGATTTAGTGACTTCAACATTGATAGTTCAGAAAGCATATCTCTGAA 540 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 TGAACTAAAGAGGAAACAGCCTGAGCTTGAAATGGAAACACCACCATCACATAGGCAGCC 600 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 CAAGACCACAGGTAAGAGTATCGATGGTGATTCATCTTCCCAAAGCAATGGCCGT-GGGT 659 consensus_9780#1 ----------------------------------TCTTCGCAAAGCCATGGCCCCCGGGT 26 ***** ****** ****** **** consensus_9780#0 CTCACAAGTCAAACAAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCACGGAAATCAA 719 consensus_9780#1 CTCACAAGTCAAACCAGCGTGAAAAGCTTGACTGGAATCTTCTTAGACCCCGGAAATCCA 86 ************** ********************************** ******** * consensus_9780#0 AATGAAGTCCGGAGTTAGCGTAGCCAAAACTTTGCTCTTGTACCCCA-TTTGTACTCTGT 778 consensus_9780#1 AATGAAGTCCGGAGTTAGCGTAGCCCAAACTTTGCTCTTGTACCCCACTTTGTACTCTCT 146 ************************* ********************* ********** * consensus_9780#0 ATCTGATTAGCATTTTCTCCTGTTTCGCGAGTTATATCTAGAAAGCTGGTAACCA-GTAG 837 consensus_9780#1 ATCTGATTAGCATTTTCTCCTGTTTCGCGAGT-AAATCTAGAAAGCTGGTAACCCCGTAG 205 ******************************** * ******************* **** consensus_9780#0 TTTATTTACAGTAAAATGTTTGTCCTTGCCTAATCTTGGTTTCAACTGTTCCCCTGTTCT 897 consensus_9780#1 TTTATTTACCAGTAAATGTTTGGT------------------------------------ 229 ********* ********* consensus_9780#0 TGATATGTTGTTTACTGCATTACTTTGCTGTAACAAGGTTCTGCAGCAGCAATGAGAAAT 957 consensus_9780#1 ------------------------------------------------------------ consensus_9780#0 TACAGTTTTGACAGTGGAAAAAAAAAAAAAAAAAAA 993 consensus_9780#1 ------------------------------------ |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||