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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9786#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 746 fasta sequence
[GGCCTATCTTCCTCGTCCTCTTCCTCCTCCTCCTCCTGCCTAGCCTATTTTGCTTTGGTCGATTGCTGCTGCTGTGGTGGTGGTGGACTGGTGGTGGCGGCTAGCGAGATAATAAGAGTGACTGGATAGGATGGCGACGACGGTGGCGGCGATGTGCGGGGCGGCGGAGGAGCGGGTGGTGGGGACGCACAAGGCGCCCGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTCGAGAGCGAGCGCCGCATCCTCTGCCTCCCGCTCTGCGTCAAGAGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTCTACAGCTAGACAAAACTTCTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCT--AATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTC-TTGTATTTACTCCTCCAGTTAGTGAAAACTGAGTGA]
[+] EMBL AK066921 [GGCCTATCTTCCTCGTCCTCTTCCTCCTCCTCCTCCTGCCTAGCCTATTTTGCTTTGGTCGATTGCTGCTGCTGTGGTGGTGGTGGACTGGTGGTGGCGGCTAGCGAGATAATAAGAGTGACTGGATAGGATGGCGACGACGGTGGCGGCGATGTGCGGGGCGGCGGAGGAGCGGGTGGTGGGGACGCACAAGGCGCCCGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTCGAGAGCGAGCGCCGCATCCTCTGCCTCCCGCTCTGCGTCAAGAGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTCTACAGCTAGACAAAACTTCTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCT AATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTC TTGTATTTACTCCTCCAGTTAGTGAAAA ]
[+] EMBL AK066753 [ CTATCTTCCTCGTCCTCTTCCTCCTCCTCCTCCTGCCTAGCCTATTTTGCTTTGGTCGATTGCTGCTGCTGTGGTGGTGGTGGACTGGTGGTGGCGGCTAGCGAGATAATAAGAGTGACTGGATAGGATGGCGACGACGGTGGCGGCGATGTGCGGGGCGGCGGAGGAGCGGGTGGTGGGGACGCACAAGGCGCCCGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTCGAGAGCGAGCGCCGCATCCTCTGCCTCCCGCTCTGCGTCAAGAGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTCTACAGCTAGACAAAACTTCTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCT AATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTC TTGTATTTACTCCTCCAGTTAGTGAAAACTGAGTGA]
[+] EMBL BM037752 [ GGCG CCGGGGCGTGCCCGC GT C GCGGCGCCGT GT GCCACCGACGTCGAGAGCGAGC CCGCATCCT TGCCTCCCGCT TGCGTCAAGAGCAAGCGCAAGTACTCCTGCT CAGGTGCCTCCGCCGCCTCGTCACCCTGTACAGCTAGACAAAACTTCTTGCTACTNTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCTCNNNTCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATNGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTCGTTGTATTTACTCCTCCCNTTAGT ]
[+] EMBL OSR05921A [ GATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGNCTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCT AATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTNCCTCACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCAGTGTC TTGTATTTACTCCT ]
consensusID : consensus_9786#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 678 fasta sequence
[ACATTCCCATCTTTCCAATGTCCACTTCCATCCCTCTCATCTAGCAAGCCGCTGCCACTTCAAATAGGTAGGTAGATAGTGAGAGATCGAGAGCGAGAGAGAGAGAGGATTGCATTGAGAGCTAGCAAGCAAAAGGGCAATGGCGATGGTGGAGGCGGCGAGGAGGGCGATGGGGTGGTGCGGGGCGGAGGAGGAGAGGGAGACGGCGTCGCGGAAGGCGCCGGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTGGAGAGCTCCCGGCGGATCCTGTGCCTCCCGCTCTGCCTCCGCAACAAGAAGAAGTTCTCCTGCTCCCGCTGCCGCCGCGCCCTCGTCGCCATCGTCTCCTCCTCCGCCGCCGCCTAGCTAATTAAACCCCTGTAGCTAATTAGTTAGTTAATTAACCCACACTAGCTAGCTAGCTACATGATCGAGTTAGTAGCTTCTGCTCTGCTGTTGTTTCATTGATTAGCTAGTTAGCTTGGTTGTGCGTGACTAATCTGGTTATTACTAGCTGATTAATTGCTTACTACTTGTTCTGCTCATCTTTGTTTAGTTTGAGTAAGTTGAGCCAGCTGTTAGATCGAGTTTATAGCTAAGCTAGGTGGCAAAGCAGGGTATGTTTTGGTTGCGTCCTTCAGAGTCTGAACTGGAATGTC]
[+] EMBL AK111371 [ACATTCCCATCTTTCCAATGTCCACTTCCATCCCTCTCATCTAGCAAGCCGCTGCCACTTCAAATAGGTAGGTAGATAGTGAGAGATCGAGAGCGAGAGAGAGAGAGGATTGCATTGAGAGCTAGCAAGCAAAAGGGCAATGGCGATGGTGGAGGCGGCGAGGAGGGCGATGGGGTGGTGCGGGGCGGAGGAGGAGAGGGAGACGGCGTCGCGGAAGGCGCCGGGGGCGTGCCCGCGGTGCGGCGGCGCGGTGGTGGCCACCGACGTGGAGAGCTCCCGGCGGATCCTGTGCCTCCCGCTCTGCCTCCGCAACAAGAAGAAGTTCTCCTGCTCCCGCTGCCGCCGCGCCCTCGTCGCCATCGTCTCCTCCTCCGCCGCCGCCTAGCTAATTAAACCCCTGTAGCTAATTAGTTAGTTAATTAACCCACACTAGCTAGCTAGCTACATGATCGAGTTAGTAGCTTCTGCTCTGCTGTTGTTTCATTGATTAGCTAGTTAGCTTGGTTGTGCGTGACTAATCTGGTTATTACTAGCTGATTAATTGCTTACTACTTGTTCTGCTCATCTTTGTTTAGTTTGAGTAAGTTGAGCCAGCTGTTAGATCGAGTTTATAGCTAAGCTAGGTGGCAAAGCAGGGTATGTTTTGGTTGCGTCCTTCAGAGTCTGAACTGGAATGTC]
consensusID : consensus_9786#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence
[CGAGCGCCTGCATCCTNGTGCCTCCCGCTCTGCGTCAAGAGGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTGCTACAGCTAGACNAAACTTCGTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACTACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCTAATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCNGTGTCTTGTATTTAAAAAAAAAAAA]
[+] EMBL BQ905917 [CGAGCGCCTGCATCCTNGTGCCTCCCGCTCTGCGTCAAGAGGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCACCCTGCTACAGCTAGACNAAACTTCGTTGCTACTTTCATCACAGTGGTTAATTTCTTGATTAGGTTCATTTGCCCTTGATTAATTAAGGATAATCCATCCTTCCTTCCTTCCTAGCTCTCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACTACTAGTTGATAGGGACTAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTCTAATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGTGCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGTGTAACTATGTGTTCCCNGTGTCTTGTATTTAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9786#0 ------------------------GGCCTATCTTCCTCGTCCTCTTCCTCCTCCTCCTCC 36
consensus_9786#2 ------------------------------------------------------------
consensus_9786#1 ACATTCCCATCTTTCCAATGTCCACTTCCATCCCTCTCATCTAGCAAGCCGCTGCCACTT 60
consensus_9786#0 TGCCTAGCCTATTTTGCTTTGGTCGATTGCTGCTGCTGTGGTGGTGGTGGACTGGTGGTG 96
consensus_9786#2 ------------------------------------------------------------
consensus_9786#1 CAAATAGGTAGGTAGATAGTGAGAGATCGAGAGCGAGAGAGAGAGAGGATTGCATTGAGA 120
consensus_9786#0 GCGGCTAGCGAGATAATAAGAGTGACTGGATAGGATGGCGACGACGGTGGCGGCGATGTG 156
consensus_9786#2 ------------------------------------------------------------
consensus_9786#1 GCTAGCAAGCAAAAGGGCAATGGCGATGGTGGAGGCGGCGAGGAGGGCGATGGGGTGGTG 180
consensus_9786#0 CGGGGCGGCGGAGGAGCGGGTGGTGGGGACGCACAAGGCGCCCGGGGCGTGCCCGCGGTG 216
consensus_9786#2 ------------------------------------------------------------
consensus_9786#1 CGGGGCGGAGGAGGAGAGGGAGACGGCGTCGCGGAAGGCGCCGGGGGCGTGCCCGCGGTG 240
consensus_9786#0 CGGCGGCGCGGTGGTGGCCACCGACGTCGAGAGCGAGCGCC-GCATCCTC-TGCCTCCCG 274
consensus_9786#2 ---------------------------------CGAGCGCCTGCATCCTNGTGCCTCCCG 27
consensus_9786#1 CGGCGGCGCGGTGGTGGCCACCGACGTGGAGAGCTCCCGGC-GGATCCTG-TGCCTCCCG 298
* ** * * ***** *********
consensus_9786#0 CTCTGCGTCAAGAG-CAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCAC 333
consensus_9786#2 CTCTGCGTCAAGAGGCAAGCGCAAGTACTCCTGCTCCAGGTGCCTCCGCCGCCTCGTCAC 87
consensus_9786#1 CTCTGCCTCCGCAA-CAAGAAGAAGTTCTCCTGCTCCCGCTGCCGCCGCGCCCTCGTCGC 357
****** ** * **** **** ********** * **** **** ******* *
consensus_9786#0 CCT-CTACAGCTAGACAAAACTTC-TTGCTACTTTCATCACAGTGGTTAATTTCTTGATT 391
consensus_9786#2 CCTGCTACAGCTAGACNAAACTTCGTTGCTACTTTCATCACAGTGGTTAATTTCTTGATT 147
consensus_9786#1 CATCGTCTCCTCCTCCGCCGCCGCCTAGCTAATTAAACCCCTGTAGCTAATTAGTTAGTT 417
* * * * * * * **** ** * * * ** * ***** ** **
consensus_9786#0 AGGTTCATTTGCCCTTGATTAATTAA--GGATAATCCA-TCCTTCCTTCCTTCCTAGCTC 448
consensus_9786#2 AGGTTCATTTGCCCTTGATTAATTAA--GGATAATCCA-TCCTTCCTTCCTTCCTAGCTC 204
consensus_9786#1 AA-TTAACCCACACTAG-CTAGCTAGCTACATGATCGAGTTAGTAGCTTCTGCTCTGCTG 475
* ** * * ** * ** ** ** *** * * * * ** * ***
consensus_9786#0 TCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACAACTAGTTGATAGGGAC 508
consensus_9786#2 TCGTCTCGGCTAGCTAGTGTGTGCTCTTCTTGTCTAGCAGTACTACTAGTTGATAGGGAC 264
consensus_9786#1 TTGTTTCA-TTGATTAGCTAGTTAGCTTGGTTGTGCGTGACTAATCTGGTTATTACTAGC 534
* ** ** * *** ** *** * * ** *** ** *
consensus_9786#0 TAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTC 568
consensus_9786#2 TAGCTAGCTGATCATCGGCAGATGGATTAATGTTTCGTCTGGTGCGATCAACCGTGTGTC 324
consensus_9786#1 TGATTAATTGCTTACTACTTGTTCTGCTCAT-CTTTGTTTAGTTTGAGTAAGT-TGAGCC 592
* ** ** * * * * * ** ** ** * ** ** ** ** * *
consensus_9786#0 TAATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGT 628
consensus_9786#2 TAATCTTGCGATCAGCGGACAGCAGATGTGCCTACATGTGCATCACGTGACGCTGTGCGT 384
consensus_9786#1 AGCTGTTAGATCGAGTTTATAGCTAAGCTAGGTGGCAAAGCAGGGTATGTT-TTGGTTGC 651
* ** ** * *** * * * *** ** ** *
consensus_9786#0 GCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGT 688
consensus_9786#2 GCCTGACGCTTTTTGTGTTGGTATGTTTGTAAAATTGTAAAAAATGTAAATCAGGTGTGT 444
consensus_9786#1 GTCCTTCAGAGTCTGAACTGGAATGTC--------------------------------- 678
* * * * ** *** ****
consensus_9786#0 GTAACTATGTGTTCCCAGTGTCTTGTATTTACTCCTCCAGTTAGTGAAAACTGAGTGA 746
consensus_9786#2 GTAACTATGTGTTCCCNGTGTCTTGTATTTA-------AAAAAAAAAAA--------- 486
consensus_9786#1 ----------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||