These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1489 fasta sequence [TCTCGTTGGGATGTCTATCTTCTTTCAAGTGATAGCCAGATCCATTGGTTCTCAATCATTAACTCACTGATGATTGTCCTTTTCCTTTCTGGCATGGTAGCCATGATCATGATGAGAACTCTTTACAAGGATATTGCAAACTATAATCAGCTTGACAACCAGGATGAGGCCCAGGAAGAAACTGGCTGGAAGTTAGTGCATGGTGATGTCTTCAGGCCACCTGTCCACTCAGGCCTCCTTTGTGTTTATGTTGGAACTGGTGTGCAGTTCTTTGGAATGACACTGGTAACCATGATGTTTGCGCTACTTGGATTCTTGTCCCCTGCAAACCGTGGTGGACTAATGACTGCTATGGTCCTTCTGTGGGTGTTCATGGGTGTATTGGCAGGATACACCTCATCTCGCCTATATAAGATGTTCAAAGGCACTGAATGGAAGAAAATCACCCTCAAGACTGCCTTTATGTTTCCTGGTATAATCTTTGCACTCTTTTTCTTCCTAAATGCCCTGATCTGGGGTGAGAAATCATCAGGTGCAGTTCCCTTTGGAACAATGTTTGCTCTGTTCCTCCTTTGGTTTGGCATCTCTGTGCCGCTAGTCTTTGTTGGAAGTTTCTTGGGCTTCAAGCAGCCAGCCATTGAGGACCCAGTGAAGACAAACAAGATTCCCAGGCAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTTGCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCAATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTCATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGACTATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCTT-ATGCCAT-CTTC-TACTTCTT-CA-ACA-AGCT-GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA-TG-CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGC-TACA-AATGTGATACA-ATGGTGTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACA-TGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTTCTTTTTCTGGAGATTTGAGGCATATCACATTCGAACATACGTACTTTATCATCGGTTTGCTATCCACTAGCTGGAGATTNCCTTGTAAAAAA] [+] EMBL AK071892 [TCTCGTTGGGATGTCTATCTTCTTTCAAGTGATAGCCAGATCCATTGGTTCTCAATCATTAACTCACTGATGATTGTCCTTTTCCTTTCTGGCATGGTAGCCATGATCATGATGAGAACTCTTTACAAGGATATTGCAAACTATAATCAGCTTGACAACCAGGATGAGGCCCAGGAAGAAACTGGCTGGAAGTTAGTGCATGGTGATGTCTTCAGGCCACCTGTCCACTCAGGCCTCCTTTGTGTTTATGTTGGAACTGGTGTGCAGTTCTTTGGAATGACACTGGTAACCATGATGTTTGCGCTACTTGGATTCTTGTCCCCTGCAAACCGTGGTGGACTAATGACTGCTATGGTCCTTCTGTGGGTGTTCATGGGTGTATTGGCAGGATACACCTCATCTCGCCTATATAAGATGTTCAAAGGCACTGAATGGAAGAAAATCACCCTCAAGACTGCCTTTATGTTTCCTGGTATAATCTTTGCACTCTTTTTCTTCCTAAATGCCCTGATCTGGGGTGAGAAATCATCAGGTGCAGTTCCCTTTGGAACAATGTTTGCTCTGTTCCTCCTTTGGTTTGGCATCTCTGTGCCGCTAGTCTTTGTTGGAAGTTTCTTGGGCTTCAAGCAGCCAGCCATTGAGGACCCAGTGAAGACAAACAAGATTCCCAGGCAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTTGCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCAATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTCATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGACTATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCTT ATGCCAT CTTC TACTTCTT CA ACA AGCT GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA TG CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGC TACA AATGTGATACA ATGGTGTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACA TGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTT ] [+] EMBL CB662017 [ TCCTTCTGTGGTTGTTCATGGGTGTATTGGCAGGATACACCTCATCTCGCCTATATAAGATGTTCAAAGGCACTGAATGGAAGAAAATCACCCTCAAGACTGCCTTTATGTTTCCTGGTATAATCTTTGCACTCTTTTTCTTCCTAAATGCCCTGATCTGGGGTGAGAAATCATCAGGTGCAGTTCCCTTTGGAACAATGTTTGCTCTGTTCCTCCTTTGGTTTGGCATCTCTGTGCCGCTAGTCTTTGTTGGAAGTTTCTTGGGCTTCAAGCAGCCAGCCATTGAGGACCCAGTGAAGACAAACAAGATTCCCAGGCAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTTGCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCAATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTCATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGACTATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCTT ATGCCAT CTTC TACTTCTT CA ACA AGCT GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA TG CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTG ] [-] EMBL CB662018 [ CAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTTGCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCAATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTCATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGACTATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCTT ATGCCAT CTTC TACTTCTT CA ACA AGCT GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA TG CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGC TACA AATGTGATACA ATGGTGTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACA TGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTTCTTTTTCTGGAG ] [+] EMBL BM037962 [ TGTATCTTGTGGCTTGAGCCCATGTTTCATACTTCTTCCANACAGACCTGGGAGATCCCGAAGCTTGTTTCAGCCATTCTCTACTTTGGTTACACTGCCTGATCATCTCGTATG TTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGCGTACACAATGTGATACACATGGTGTCTCCCCATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACA TGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTTCTTTTTCTGGAGATTTGAGGCATATCACATTCGAACATACGTACTTTATCATCGGTTTGCTATCCACTAGCTGGAGATTNCCTTGTAAAAAA] [+] EMBL BM038583 [ GCCAT CTTC TACTTCTT CA ACA AGCT GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA TG CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCCTTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGC TACA AATGTGATACC ATGGTGTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACANTGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTAaaaaaaa ] consensusID : consensus_9788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence [AGAGGACGAGACAAGGGGGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCCCATAAAAAAAAAAAAAAAA] [-] EMBL CA761673 [AGAGGACGAGACAAGGGGGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCCCATAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9788#0 TCTCGTTGGGATGTCTATCTTCTTTCAAGTGATAGCCAGATCCATTGGTTCTCAATCATT 60 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 AACTCACTGATGATTGTCCTTTTCCTTTCTGGCATGGTAGCCATGATCATGATGAGAACT 120 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 CTTTACAAGGATATTGCAAACTATAATCAGCTTGACAACCAGGATGAGGCCCAGGAAGAA 180 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 ACTGGCTGGAAGTTAGTGCATGGTGATGTCTTCAGGCCACCTGTCCACTCAGGCCTCCTT 240 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 TGTGTTTATGTTGGAACTGGTGTGCAGTTCTTTGGAATGACACTGGTAACCATGATGTTT 300 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 GCGCTACTTGGATTCTTGTCCCCTGCAAACCGTGGTGGACTAATGACTGCTATGGTCCTT 360 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 CTGTGGGTGTTCATGGGTGTATTGGCAGGATACACCTCATCTCGCCTATATAAGATGTTC 420 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 AAAGGCACTGAATGGAAGAAAATCACCCTCAAGACTGCCTTTATGTTTCCTGGTATAATC 480 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 TTTGCACTCTTTTTCTTCCTAAATGCCCTGATCTGGGGTGAGAAATCATCAGGTGCAGTT 540 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 CCCTTTGGAACAATGTTTGCTCTGTTCCTCCTTTGGTTTGGCATCTCTGTGCCGCTAGTC 600 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 TTTGTTGGAAGTTTCTTGGGCTTCAAGCAGCCAGCCATTGAGGACCCAGTGAAGACAAAC 660 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 AAGATTCCCAGGCAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTT 720 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 GCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCA 780 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 ATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTC 840 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 ATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGAC 900 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 TATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCT 960 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 TATGCCATCTTCTACTTCTTCAACAAGCTGGAGATCACGAAGCTTGTTTCAGGCATTCTC 1020 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 TACTTTGGTTACATGCTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGC 1080 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 TTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGA 1140 consensus_9788#1 ------------------------------------------------------------ consensus_9788#0 GACAGCTCGAAACATCATCTGCTACAAATGTGATACAATGGTGTCTCCCAATTAACATAT 1200 consensus_9788#1 ------------------------------------------------AGAGGACGAGAC 12 * * * * consensus_9788#0 ATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGG 1260 consensus_9788#1 AAGGGGGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGG 72 * ****************************************************** consensus_9788#0 TAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACAT 1320 consensus_9788#1 TAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACAT 132 ************************************************************ consensus_9788#0 GAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCT 1380 consensus_9788#1 GAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCT 192 ************************************************************ consensus_9788#0 TACGGCTTCACATATTTCTTTTTCTGGAGATTTGAGGCATATCACATTCGAACATACGTA 1440 consensus_9788#1 TACGGCTTCCCATAAAAAAAAAAAAAAAA------------------------------- 221 ********* **** * consensus_9788#0 CTTTATCATCGGTTTGCTATCCACTAGCTGGAGATTNCCTTGTAAAAAA 1489 consensus_9788#1 ------------------------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||