|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9788#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1489 fasta sequence
[TCTCGTTGGGATGTCTATCTTCTTTCAAGTGATAGCCAGATCCATTGGTTCTCAATCATTAACTCACTGATGATTGTCCTTTTCCTTTCTGGCATGGTAGCCATGATCATGATGAGAACTCTTTACAAGGATATTGCAAACTATAATCAGCTTGACAACCAGGATGAGGCCCAGGAAGAAACTGGCTGGAAGTTAGTGCATGGTGATGTCTTCAGGCCACCTGTCCACTCAGGCCTCCTTTGTGTTTATGTTGGAACTGGTGTGCAGTTCTTTGGAATGACACTGGTAACCATGATGTTTGCGCTACTTGGATTCTTGTCCCCTGCAAACCGTGGTGGACTAATGACTGCTATGGTCCTTCTGTGGGTGTTCATGGGTGTATTGGCAGGATACACCTCATCTCGCCTATATAAGATGTTCAAAGGCACTGAATGGAAGAAAATCACCCTCAAGACTGCCTTTATGTTTCCTGGTATAATCTTTGCACTCTTTTTCTTCCTAAATGCCCTGATCTGGGGTGAGAAATCATCAGGTGCAGTTCCCTTTGGAACAATGTTTGCTCTGTTCCTCCTTTGGTTTGGCATCTCTGTGCCGCTAGTCTTTGTTGGAAGTTTCTTGGGCTTCAAGCAGCCAGCCATTGAGGACCCAGTGAAGACAAACAAGATTCCCAGGCAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTTGCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCAATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTCATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGACTATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCTT-ATGCCAT-CTTC-TACTTCTT-CA-ACA-AGCT-GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA-TG-CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGC-TACA-AATGTGATACA-ATGGTGTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACA-TGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTTCTTTTTCTGGAGATTTGAGGCATATCACATTCGAACATACGTACTTTATCATCGGTTTGCTATCCACTAGCTGGAGATTNCCTTGTAAAAAA]
[+] EMBL AK071892 [TCTCGTTGGGATGTCTATCTTCTTTCAAGTGATAGCCAGATCCATTGGTTCTCAATCATTAACTCACTGATGATTGTCCTTTTCCTTTCTGGCATGGTAGCCATGATCATGATGAGAACTCTTTACAAGGATATTGCAAACTATAATCAGCTTGACAACCAGGATGAGGCCCAGGAAGAAACTGGCTGGAAGTTAGTGCATGGTGATGTCTTCAGGCCACCTGTCCACTCAGGCCTCCTTTGTGTTTATGTTGGAACTGGTGTGCAGTTCTTTGGAATGACACTGGTAACCATGATGTTTGCGCTACTTGGATTCTTGTCCCCTGCAAACCGTGGTGGACTAATGACTGCTATGGTCCTTCTGTGGGTGTTCATGGGTGTATTGGCAGGATACACCTCATCTCGCCTATATAAGATGTTCAAAGGCACTGAATGGAAGAAAATCACCCTCAAGACTGCCTTTATGTTTCCTGGTATAATCTTTGCACTCTTTTTCTTCCTAAATGCCCTGATCTGGGGTGAGAAATCATCAGGTGCAGTTCCCTTTGGAACAATGTTTGCTCTGTTCCTCCTTTGGTTTGGCATCTCTGTGCCGCTAGTCTTTGTTGGAAGTTTCTTGGGCTTCAAGCAGCCAGCCATTGAGGACCCAGTGAAGACAAACAAGATTCCCAGGCAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTTGCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCAATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTCATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGACTATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCTT ATGCCAT CTTC TACTTCTT CA ACA AGCT GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA TG CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGC TACA AATGTGATACA ATGGTGTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACA TGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTT ]
[+] EMBL CB662017 [ TCCTTCTGTGGTTGTTCATGGGTGTATTGGCAGGATACACCTCATCTCGCCTATATAAGATGTTCAAAGGCACTGAATGGAAGAAAATCACCCTCAAGACTGCCTTTATGTTTCCTGGTATAATCTTTGCACTCTTTTTCTTCCTAAATGCCCTGATCTGGGGTGAGAAATCATCAGGTGCAGTTCCCTTTGGAACAATGTTTGCTCTGTTCCTCCTTTGGTTTGGCATCTCTGTGCCGCTAGTCTTTGTTGGAAGTTTCTTGGGCTTCAAGCAGCCAGCCATTGAGGACCCAGTGAAGACAAACAAGATTCCCAGGCAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTTGCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCAATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTCATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGACTATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCTT ATGCCAT CTTC TACTTCTT CA ACA AGCT GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA TG CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTG ]
[-] EMBL CB662018 [ CAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTTGCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCAATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTCATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGACTATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCTT ATGCCAT CTTC TACTTCTT CA ACA AGCT GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA TG CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGC TACA AATGTGATACA ATGGTGTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACA TGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTTCTTTTTCTGGAG ]
[+] EMBL BM037962 [ TGTATCTTGTGGCTTGAGCCCATGTTTCATACTTCTTCCANACAGACCTGGGAGATCCCGAAGCTTGTTTCAGCCATTCTCTACTTTGGTTACACTGCCTGATCATCTCGTATG TTTCTTCGTGCTGACTGGTACCATTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGCGTACACAATGTGATACACATGGTGTCTCCCCATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACA TGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCACATATTTCTTTTTCTGGAGATTTGAGGCATATCACATTCGAACATACGTACTTTATCATCGGTTTGCTATCCACTAGCTGGAGATTNCCTTGTAAAAAA]
[+] EMBL BM038583 [ GCCAT CTTC TACTTCTT CA ACA AGCT GGAGATCACGAAGCTTGTTTCAGGCATTCTCTACTTTGGTTACA TG CTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCCTTGGCTTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGAGACAGCTCGAAACATCATCTGC TACA AATGTGATACC ATGGTGTCTCCCAATTAACATATATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACANTGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTAaaaaaaa ]
consensusID : consensus_9788#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 221 fasta sequence
[AGAGGACGAGACAAGGGGGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCCCATAAAAAAAAAAAAAAAA]
[-] EMBL CA761673 [AGAGGACGAGACAAGGGGGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGGTAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACATGAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCTTACGGCTTCCCATAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9788#0 TCTCGTTGGGATGTCTATCTTCTTTCAAGTGATAGCCAGATCCATTGGTTCTCAATCATT 60
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 AACTCACTGATGATTGTCCTTTTCCTTTCTGGCATGGTAGCCATGATCATGATGAGAACT 120
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 CTTTACAAGGATATTGCAAACTATAATCAGCTTGACAACCAGGATGAGGCCCAGGAAGAA 180
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 ACTGGCTGGAAGTTAGTGCATGGTGATGTCTTCAGGCCACCTGTCCACTCAGGCCTCCTT 240
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TGTGTTTATGTTGGAACTGGTGTGCAGTTCTTTGGAATGACACTGGTAACCATGATGTTT 300
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 GCGCTACTTGGATTCTTGTCCCCTGCAAACCGTGGTGGACTAATGACTGCTATGGTCCTT 360
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 CTGTGGGTGTTCATGGGTGTATTGGCAGGATACACCTCATCTCGCCTATATAAGATGTTC 420
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 AAAGGCACTGAATGGAAGAAAATCACCCTCAAGACTGCCTTTATGTTTCCTGGTATAATC 480
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TTTGCACTCTTTTTCTTCCTAAATGCCCTGATCTGGGGTGAGAAATCATCAGGTGCAGTT 540
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 CCCTTTGGAACAATGTTTGCTCTGTTCCTCCTTTGGTTTGGCATCTCTGTGCCGCTAGTC 600
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TTTGTTGGAAGTTTCTTGGGCTTCAAGCAGCCAGCCATTGAGGACCCAGTGAAGACAAAC 660
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 AAGATTCCCAGGCAAATTCCTGAGCAGGCATGGTACCTGCAGCCAGCTTTCTCAATACTT 720
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 GCTGGTGGCATATTGCCATTTGGCGCTGTCTTCATCGAGCTCTTCTTCATTCTGACATCA 780
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 ATCTGGCTGAACCAGTTCTACTACATCTTCGGCTTCCTCTTCATAGTCTTCATCATCCTC 840
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 ATCGTTACTTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAACTATGCAGCGAGGAC 900
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TATCACTGGTGGTGGAGAGCATACCTGACTGCTGGCTCTTCAGCACTGTATCTTTTTGCT 960
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TATGCCATCTTCTACTTCTTCAACAAGCTGGAGATCACGAAGCTTGTTTCAGGCATTCTC 1020
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TACTTTGGTTACATGCTGATCATCTCGTATGCTTTCTTCGTGCTGACTGGTACCATTGGC 1080
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 TTCTATGCTTGCTTCTGGTTCGTGAGGAAGATATATGCTTCTGTGAAGATCGACTGATGA 1140
consensus_9788#1 ------------------------------------------------------------
consensus_9788#0 GACAGCTCGAAACATCATCTGCTACAAATGTGATACAATGGTGTCTCCCAATTAACATAT 1200
consensus_9788#1 ------------------------------------------------AGAGGACGAGAC 12
* * * *
consensus_9788#0 ATAAATGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGG 1260
consensus_9788#1 AAGGGGGGAAGTGGGATGTGCGACCGGATTGGATGGTTTTTGGTAGAACATGTAGTCTGG 72
* ******************************************************
consensus_9788#0 TAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACAT 1320
consensus_9788#1 TAGGAGGTAAGAATTGCCTGATGTTCAAGAGAGTTCTTGATACTCCCTGTAGCGTGACAT 132
************************************************************
consensus_9788#0 GAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCT 1380
consensus_9788#1 GAATTTTGTAACTCTGAAGATGTTTGAGTGCTTCTTGTAATATTCCATGTCTCTTTATCT 192
************************************************************
consensus_9788#0 TACGGCTTCACATATTTCTTTTTCTGGAGATTTGAGGCATATCACATTCGAACATACGTA 1440
consensus_9788#1 TACGGCTTCCCATAAAAAAAAAAAAAAAA------------------------------- 221
********* **** *
consensus_9788#0 CTTTATCATCGGTTTGCTATCCACTAGCTGGAGATTNCCTTGTAAAAAA 1489
consensus_9788#1 -------------------------------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||