cluster # 979

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Oryza sativa
cluster # 979 cluster # 979 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_979#0 length = 855 sequences # 1

consensus_979#1 length = 794 sequences # 1

consensusID : consensus_979#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 855
fasta sequence

                              [TGTTTNCTGCNCCNCCTTCGTGACATGACNCCGTTTTTCCCTGCTACAGGTCCTTACACCACCGCCNCGACTAATGTTTATTACGNCTGACACCCGCATGTTGAAAGCGTGGCCGGAAGTGCCNCGCACACTACACACCACATGTTGTGCGTAATGTGAGGAATGACTGTGTANGTTGTTAACACCGTACCTAGGCCTGGGCTGCGCCCCAGTCGACTAATAGAGGCTCGGTGGCCTAGTTGGCTATTACGNCTTCTNCGGGGATNCCCGCGTTTNAACAACAACGTNCTTCTGCACGTNCGGTTTACGTNCCNCTTNCTTTTNCCGCCTNCTGCTGCATTTNAAGCTGACGCCTGTGATGTCTTTGTTGTNATTGTTCTTGTTGTTGTTGTGTTAGTATTGTTNGTCCTGCTTGTCGTNCACGTTGGTGATGTNATTCGTGATGTTGTGGTCTTTTTNAGTGACCTTAGCCTTGGTAATTTGTAACTGTNCGTGACGTGAGTCATGATGTCTTGTGGTNCTTGCTAGCTCGTGCTCCTTGGATACTGTTGTAGTTAACCTTATTCTTGCTTTCACTGTGTGTACTTCCTACTAGTTCTACTTGTTGGTACATTGTTCTGCTGGTACGTCTTTACTGGTTTAGTTGTTACCTTACGCAGTAGCCTTAAAGATGCTCTTCGTCGTTTATGGCGACTGTGATGGGGAGTGTTATTGTAACTCTACTTAGTGTCATTGGTGTTCCTTGTTGTAACAATCTGTTAGTTAGTCTATCTTTATATTTTGACTCGGCCGGCTGCCCTTCCTAACAGGCTTAACTGCTCCGCGAAGGATTTGAGATGAATATGTGTGAACGAA]

[+] EMBL CA758514             [TGTTTNCTGCNCCNCCTTCGTGACATGACNCCGTTTTTCCCTGCTACAGGTCCTTACACCACCGCCNCGACTAATGTTTATTACGNCTGACACCCGCATGTTGAAAGCGTGGCCGGAAGTGCCNCGCACACTACACACCACATGTTGTGCGTAATGTGAGGAATGACTGTGTANGTTGTTAACACCGTACCTAGGCCTGGGCTGCGCCCCAGTCGACTAATAGAGGCTCGGTGGCCTAGTTGGCTATTACGNCTTCTNCGGGGATNCCCGCGTTTNAACAACAACGTNCTTCTGCACGTNCGGTTTACGTNCCNCTTNCTTTTNCCGCCTNCTGCTGCATTTNAAGCTGACGCCTGTGATGTCTTTGTTGTNATTGTTCTTGTTGTTGTTGTGTTAGTATTGTTNGTCCTGCTTGTCGTNCACGTTGGTGATGTNATTCGTGATGTTGTGGTCTTTTTNAGTGACCTTAGCCTTGGTAATTTGTAACTGTNCGTGACGTGAGTCATGATGTCTTGTGGTNCTTGCTAGCTCGTGCTCCTTGGATACTGTTGTAGTTAACCTTATTCTTGCTTTCACTGTGTGTACTTCCTACTAGTTCTACTTGTTGGTACATTGTTCTGCTGGTACGTCTTTACTGGTTTAGTTGTTACCTTACGCAGTAGCCTTAAAGATGCTCTTCGTCGTTTATGGCGACTGTGATGGGGAGTGTTATTGTAACTCTACTTAGTGTCATTGGTGTTCCTTGTTGTAACAATCTGTTAGTTAGTCTATCTTTATATTTTGACTCGGCCGGCTGCCCTTCCTAACAGGCTTAACTGCTCCGCGAAGGATTTGAGATGAATATGTGTGAACGAA]




>consensus_979#0
TGTTTNCTGCNCCNCCTTCGTGACATGACNCCGTTTTTCCCTGCTACAGGTCCTTACACC
ACCGCCNCGACTAATGTTTATTACGNCTGACACCCGCATGTTGAAAGCGTGGCCGGAAGT
GCCNCGCACACTACACACCACATGTTGTGCGTAATGTGAGGAATGACTGTGTANGTTGTT
AACACCGTACCTAGGCCTGGGCTGCGCCCCAGTCGACTAATAGAGGCTCGGTGGCCTAGT
TGGCTATTACGNCTTCTNCGGGGATNCCCGCGTTTNAACAACAACGTNCTTCTGCACGTN
CGGTTTACGTNCCNCTTNCTTTTNCCGCCTNCTGCTGCATTTNAAGCTGACGCCTGTGAT
GTCTTTGTTGTNATTGTTCTTGTTGTTGTTGTGTTAGTATTGTTNGTCCTGCTTGTCGTN
CACGTTGGTGATGTNATTCGTGATGTTGTGGTCTTTTTNAGTGACCTTAGCCTTGGTAAT
TTGTAACTGTNCGTGACGTGAGTCATGATGTCTTGTGGTNCTTGCTAGCTCGTGCTCCTT
GGATACTGTTGTAGTTAACCTTATTCTTGCTTTCACTGTGTGTACTTCCTACTAGTTCTA
CTTGTTGGTACATTGTTCTGCTGGTACGTCTTTACTGGTTTAGTTGTTACCTTACGCAGT
AGCCTTAAAGATGCTCTTCGTCGTTTATGGCGACTGTGATGGGGAGTGTTATTGTAACTC
TACTTAGTGTCATTGGTGTTCCTTGTTGTAACAATCTGTTAGTTAGTCTATCTTTATATT
TTGACTCGGCCGGCTGCCCTTCCTAACAGGCTTAACTGCTCCGCGAAGGATTTGAGATGA
ATATGTGTGAACGAA

consensusID : consensus_979#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 794
fasta sequence

                              [TTTTCTGCACCNCCTTCGTGACATGACGCCGTTTTTCCCTGCTACAGGTCCTTACACCCTCCTGGTNTTGGGTTTTGTGTGTGTGTGTGTGTGTGTTACTTCTACTTCTACTTCTACAGCCTTGTTACTNCTGCCCTTNCATTCCACCGCGTTTNCTGCGTNCNCCNCAGCCTNCGCCTTCGTCCGGTGNCTCCTGGTTATGTGGTNTCNATNAGTATTCCTATTTNTCAACGTACCCGGAATAACCGACCCACCCTAATGCCACNCTGTCACATTAGCACCACCCAACCCTGTNTNACACTAGCCCTGAACAATGAGCGCNTNCATAACATTTGCACATAGCTTACTGAGTAATAACGTGGTATGCACTTAATAAAAGCAGCAACCAGGGACGGCCGGAGGCAGGCTGTGCTGAGGACGGATGAGGCTCCAGGCAGGGAAGCCAGGGGATTTAGGGTAACCAGGTTAGAGCGGCCTGTAGTTAGAAAGTCCACCATAGTAAGCCTTGTGGCGCCAACGGTTAGAGCGCGGCGCCGTAAGCTGGCGTAAAGCGTGAATTGAGGGCTGCAGCAGCAGCACGCGAAAAAAAAAAGANNNANAAAAAAAAAAAAAAAAAAAATGTNACCCCCCTTCCGTTTAGGTCTTGGGAGCACTCCGGATTCTCTGAAGCCTCTGGGTTATCTGCCTGCCCAATTTGCCTCGTTTTAGGATGCTGCCACATAGTTTGGGTCTACGCCTCAAAATCAAAACTTTCTTCATCTTGGTTATAGGCTTCATGCAACCCAAGCCTTTTT]

[+] EMBL CA758560             [TTTTCTGCACCNCCTTCGTGACATGACGCCGTTTTTCCCTGCTACAGGTCCTTACACCCTCCTGGTNTTGGGTTTTGTGTGTGTGTGTGTGTGTGTTACTTCTACTTCTACTTCTACAGCCTTGTTACTNCTGCCCTTNCATTCCACCGCGTTTNCTGCGTNCNCCNCAGCCTNCGCCTTCGTCCGGTGNCTCCTGGTTATGTGGTNTCNATNAGTATTCCTATTTNTCAACGTACCCGGAATAACCGACCCACCCTAATGCCACNCTGTCACATTAGCACCACCCAACCCTGTNTNACACTAGCCCTGAACAATGAGCGCNTNCATAACATTTGCACATAGCTTACTGAGTAATAACGTGGTATGCACTTAATAAAAGCAGCAACCAGGGACGGCCGGAGGCAGGCTGTGCTGAGGACGGATGAGGCTCCAGGCAGGGAAGCCAGGGGATTTAGGGTAACCAGGTTAGAGCGGCCTGTAGTTAGAAAGTCCACCATAGTAAGCCTTGTGGCGCCAACGGTTAGAGCGCGGCGCCGTAAGCTGGCGTAAAGCGTGAATTGAGGGCTGCAGCAGCAGCACGCGAAAAAAAAAAGANNNANAAAAAAAAAAAAAAAAAAAATGTNACCCCCCTTCCGTTTAGGTCTTGGGAGCACTCCGGATTCTCTGAAGCCTCTGGGTTATCTGCCTGCCCAATTTGCCTCGTTTTAGGATGCTGCCACATAGTTTGGGTCTACGCCTCAAAATCAAAACTTTCTTCATCTTGGTTATAGGCTTCATGCAACCCAAGCCTTTTT]




>consensus_979#1
TTTTCTGCACCNCCTTCGTGACATGACGCCGTTTTTCCCTGCTACAGGTCCTTACACCCT
CCTGGTNTTGGGTTTTGTGTGTGTGTGTGTGTGTGTTACTTCTACTTCTACTTCTACAGC
CTTGTTACTNCTGCCCTTNCATTCCACCGCGTTTNCTGCGTNCNCCNCAGCCTNCGCCTT
CGTCCGGTGNCTCCTGGTTATGTGGTNTCNATNAGTATTCCTATTTNTCAACGTACCCGG
AATAACCGACCCACCCTAATGCCACNCTGTCACATTAGCACCACCCAACCCTGTNTNACA
CTAGCCCTGAACAATGAGCGCNTNCATAACATTTGCACATAGCTTACTGAGTAATAACGT
GGTATGCACTTAATAAAAGCAGCAACCAGGGACGGCCGGAGGCAGGCTGTGCTGAGGACG
GATGAGGCTCCAGGCAGGGAAGCCAGGGGATTTAGGGTAACCAGGTTAGAGCGGCCTGTA
GTTAGAAAGTCCACCATAGTAAGCCTTGTGGCGCCAACGGTTAGAGCGCGGCGCCGTAAG
CTGGCGTAAAGCGTGAATTGAGGGCTGCAGCAGCAGCACGCGAAAAAAAAAAGANNNANA
AAAAAAAAAAAAAAAAAAATGTNACCCCCCTTCCGTTTAGGTCTTGGGAGCACTCCGGAT
TCTCTGAAGCCTCTGGGTTATCTGCCTGCCCAATTTGCCTCGTTTTAGGATGCTGCCACA
TAGTTTGGGTCTACGCCTCAAAATCAAAACTTTCTTCATCTTGGTTATAGGCTTCATGCA
ACCCAAGCCTTTTT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_979#0      TGTTTNCTGCNCCNCCTTCGTGACATGACNCCGTTTTTCCCTGCTACAGGTCCTTACACC 60
consensus_979#1      --TTTTCTGCACCNCCTTCGTGACATGACGCCGTTTTTCCCTGCTACAGGTCCTTACACC 58
                       *** **** ****************** ******************************

consensus_979#0      ACCGCCNCGACTAATGTTTATTACGNCTGACACCCGCATGTTGAAAGCGTGGCCGGAAGT 120
consensus_979#1      --CTCCTGGTNTTGGGTTTTGTGTGTGTG-----TGTGTGT-----GTGTTACTTCTACT 106
                       * **  *  *   ****  *  *  **      *  ***     * **  *    * *

consensus_979#0      GCCNCGCACACTACACACCACATGTTGTGCGTAATGTGAGGAATGACTGTGTANGTTGTT 180
consensus_979#1      TCTACTTCTACAGC------CTTGTTACTNCTGCCCTTNCATTCCACCGCGTTTNCTGCG 160
                      *  *    **  *      * ****     *    *        ** * **    **  

consensus_979#0      AACACCGTACCTAGGCCTGGGCTGCGCCCCAGTCGACTAATAGAGGCTCGGTGGCCTAGT 240
consensus_979#1      TNCNCCNCA-----GCCTNCGCCTTCGTCCGGT-GNCTCCT---GGTTATGTGGTNTCNA 211
                       * **  *     ****  **      ** ** * **  *   ** *  ****  *   

consensus_979#0      TGGCTATTACGNCTTCTNCGGGGATNCCCGCGTTTNAACAACAACGTNCTTCTGCACGTN 300
consensus_979#1      TNAGTATTCCTATTTNTCAACGTA-CCCGGAATAACCGACCCACCCTAATGCCACNCTGT 270
                     *   **** *   ** *    * *  ** *  *        ** * *  * *  * *   

consensus_979#0      CGGTTTACGTNCCNCTTNCTTTTNCCGCCTNCTGCTGCATTTNAAGCTGA-CGCCTGTGA 359
consensus_979#1      CACATTA-GCACCACCCAACCCTGTNTNACACTA--GCCCTGAACAATGAGCGCNTNCAT 327
                     *   *** *  ** *       *        **   **  *  *   *** *** *    

consensus_979#0      TGTCTTTGTTGTNATTGTTCTTGTTGTTGTTGTGTTAGTATTGTTNGTCCTGCTTGTCGT 419
consensus_979#1      AACATTTGCACATAGCTTACTGAGTAATAACGTGGTA-TGCACTTAATAAAAGCAGCAAC 386
                         ****     *   * **   *  *   *** ** *    **  *       *    

consensus_979#0      NCACGTTGGTGATGTNATTCGTGATGTTGTGGTCTTTTTNAGTGACCTTAGCCTTGGTAA 479
consensus_979#1      CAGGGACGGCCG-GAGGCAGGCTGTGCTGAGGACGGATGA---GGCTCCAGGCAGGGAAG 442
                         *  **    *      *   ** ** ** *   *     * *   ** *  ** * 

consensus_979#0      TTTGTAACTGTNCGTGACGTGAGTCATGATGTCTTGTGGTNCTTGCTAGCTCGTGCTCCT 539
consensus_979#1      CCAGGGGATTTAGGGTAACCAGGTTAGAGCGGCCTGTAGTT------AGAAAGTCCACCA 496
                        *    * *  *  *     ** *    * * *** **       **   ** * ** 

consensus_979#0      TGGATACTGTTGTAGTTAACCTTATTCTTGCTTTCACTGTGTGTACTTCCTACTAGTTCT 599
consensus_979#1      TAGTAAGCCTTGTGGC-GCCAACGGTTAGAGCGCGGCGCCGTAAGCTGGCGTAAAGCGTG 555
                     * *  *   **** *    *     *          *   **   **  *    **    

consensus_979#0      ACTTGTTGGTACATTGTTCTGCTGGTACGTCTTTACTGGTTTAGTTGTTACCTTACGCAG 659
consensus_979#1      AATTGAGGGC----TGCAGCAGCAGCACGCGAAAAAAAAAAGANNNANAAAAAAAAAAAA 611
                     * ***  **     **        * ***     *       *      *    *   * 

consensus_979#0      TAGCCTTAAAGATGCTCTTCGTCGTTTATGGCGACTGTG-ATGGGGAGTGTTATTGTAAC 718
consensus_979#1      AAAAAAAATGTNACCCCCCTTCCGTTTAGGTCTTGGGAGCACTCCGGATTCTCTGAAGCC 671
                      *     *      * *     ****** * *    * * *    *  *  * *     *

consensus_979#0      TCTACTTAGTGTCATTG----GTGTTCCTTGTTGTAACAATCTGTTAGTTAGTCTATCTT 774
consensus_979#1      TCTGGGTTATCTGCCTGCCCAATTTGCCTCGTTTTAGGATGCTGCCACATAGTTTGGGTC 731
                     ***   *  * *   **     * * *** *** **  *  ***  *  **** *   * 

consensus_979#0      TATATTTTGA---CTCGGCCGGCTGC-CCTTCCTAACAGGCTTAACTGCTCCGCGAAGGA 830
consensus_979#1      TACGCCTCAAAATCAAAACTTTCTTCATCTTGGTTATAGGCTTCA-TGCAACCCAAGCCT 790
                     **    *  *   *    *   ** *  ***  * * ****** * ***  * * *    

consensus_979#0      TTTGAGATGAATATGTGTGAACGAA 855
consensus_979#1      TTTT--------------------- 794
                     ***