|
These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9799#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1081 fasta sequence
[AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCGGGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGGACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAGGACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCG-CCGCGCCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG-CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG-TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCATTAGACTCACTGATCATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTTTTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACCCAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATTTTCTGGTCACAATAATTGATGTGT]
[+] EMBL AK061374 [AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCGGGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGGACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAGGACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCG CCGCGCCTCCCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATG ]
[-] EMBL CB684358 [ CGCGNCCGCGCCTCCCGCTCGTTTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACACCGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTGGAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGCGCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACGCCGACGACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCAT ]
[+] EMBL BM419271 [ GACCTGTGGGCGCGCAGCGGCAAGAAGGGGTACCCGGAGTACTCGCCGGCCGTCGCCGACGGCTACATCCGCCGCCAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCGCTGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCCCNCATAAAATAGAATGATTTTCCATTAaaaa ]
[+] EMBL CB000590 [ CCGCCG CAAGGATCGGCCGCAGCAGCTCACCTTCCTGGAGCAGATTCGGGTGTTCGTCTCATCGCAGTCATCGGAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTTGCAATCACTCCTCCTATTTGTGCGATAGCG TGCATGGGCCATGTGACAATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCATTAGACTCACTGATCATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTTTTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACCCAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATTTTCTGGTCACAATAATTGATGTGT]
[+] EMBL CB000587 [ g gAAGGATCGGCCGAAGCAGCTCAGCTTGCTGGAGCAGATTCGGGAGTTCGTCTCATCGCAGTGATCGGAGAACCCATCAATTAATCTCTTTTCTTTTCTTAATCGATTTTTCTTCTCTTTGCAATCACTCCTCGTATTTGTGCGATAGCG TGCGTGGGCCATGTGACGATCTCTTGTGATGAATGGATGATCACGCGTGCTACCTAACCTACCAGATCGCCATATCAGGGTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTATGCGTGGGGGTGAAATCAGCCATCTTCCTGTAATAAAATAGAGTGATTTTCCATTAGACTCACCGATCATTGGCTGTGACATTTGCCGGCCGCCTGTGCATCAGTTATCTCGATCAAGGCTTCAACTTTCACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGA ]
consensusID : consensus_9799#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 463 fasta sequence
[GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGGCGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCTACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGCCATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAGATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA]
[+] EMBL BM419736 [GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGGCGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCTACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGGTGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAATCTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGCCATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAGATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGGGTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9799#0 AAAGAAAGAAAAGCTCGACTCGAGCTCGCCGCGATTGAATCGCGCATGGGCACGGCGGCG 60
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 GGCGACGCGGCGGAGCAGCCACCGGCGGCGCCGGAGGCGAAGAGGGCGGCGGCTCCACGG 120
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 ACGCTGGTGTTCACGTACGGCACGCTGAAGAGGGGCTTCTCCAACCACGGCCTCCTCCAG 180
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 GACCTGGCCCGGGACGGCGACGCCTCCTTCGTGGGCGCCGCCACCACCGCGCCGCGCCTC 240
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 CCGCTCGTCTGCGGGCCCTACCGCGTCCCCTTCCTCCTCAACCTCCCCGGCGCCGGACAC 300
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 CGCGTCTCCGGCGAGCTCTACGCCGTCACGCCGCGCGGGCTCGACCGCCTCGACGAGCTG 360
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 GAGGGCGTCTCCCGCGCGCACTACGAGCGCCTCCCCATCTCCGTCCTCCTCGCCGAGGGC 420
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 GCCCAGGTCGACGCCGTCGCCTACTACGCGCACCGCGGCTACG--CCGACGACCTGTGGG 478
consensus_9799#1 ---------GACGCCGTCGCTTATTACGCGCACCGCGGTTACAGCTCGACGACCTGTGGG 51
*********** ** ************** *** **************
consensus_9799#0 CGC-GCAGCGGCAAGAAGGGGTACCCGG--AGTACTCGCCGGC-CGTCGCC-GAC-GGCT 532
consensus_9799#1 CGCAGCAGCGGCAAGAAGGGGTACCCAGGTAGTACTCGCCGCCACGTCGCNCGACAGGCT 111
*** ********************** * *********** * ****** *** ****
consensus_9799#0 ACATC-CGC-CGCAAGGATCGGC-CGCAGCAGCTCAC-CTTCCTGGAGC--AGATTCGGG 586
consensus_9799#1 ACATCACGCACGCAAGGATCAGCACGCAGCAGCTCACACTTCCTGGGANCAAGATTCGGG 171
***** *** ********** ** ************* ******** *********
consensus_9799#0 TGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAA-TTAATCTCTTTTCTTTTCTTAAT 645
consensus_9799#1 TGTTCGTCTCATCGCAGTCATCGTAGAACCCATCAAATTAATCTCTTTTCTTTTCTTAAT 231
************************************ ***********************
consensus_9799#0 CTATTTTTCTTCTCTTTGCAA-TCACTC-CTCCTATTTGTGC-GATAGCGTGCATGGG-C 701
consensus_9799#1 CTATTTTTCTTCTCTTGGCAAATCACTCACTCCTATTTGTGCAGATAGCGTGCATGGGGC 291
**************** **** ****** ************* *************** *
consensus_9799#0 CATGTGACAATCTCTTGTGATGAATGGATG-ATCACGCGTGCTAC-CTAAC-CTACCAGA 758
consensus_9799#1 CATGTGACAATCTCTTGTGATGAATGGANGGATCACGCGTGCTACACTAACACTACCAAG 351
**************************** * ************** ***** ******
consensus_9799#0 TCGCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGG 818
consensus_9799#1 ATCCCATATCAGGCTATCGCTGATCGCGTGATCTGTAGTATCACATCCGTTTGTGTGGGG 411
*********************************************************
consensus_9799#0 GTAAAATCAGCCATCTTCCTGTAATAAAATAGAATGATTTTCCA-TTAGACTCACTGATC 877
consensus_9799#1 GTAAAATCAGCCATCTTCCGGTAATAAAATAGAATGATTTTCCAATTAAAAA-------- 463
******************* ************************ *** *
consensus_9799#0 ATTGGCTGTGAAATTTGCCGGCCGCCTGTTCATCAGTTATCTCGATCAAGGCTTCAACTT 937
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 TTACTGTGGTATGCCGGCTCCTAGCTGGAAAATGTTGAGGACAAAAACTCTTCTTCAACC 997
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 CAAAGATAACACAACCATCCTGAATTTGGTTGTAGGGGACGCAAATTCAAAACCATAATT 1057
consensus_9799#1 ------------------------------------------------------------
consensus_9799#0 TTCTGGTCACAATAATTGATGTGT 1081
consensus_9799#1 ------------------------
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||