These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9801#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 794 fasta sequence [TTTTTCCGCTCAGGATGACA-TGTGGTTCATAGATTTGAACTCGAGCACAAAAGAAGCCAAATAATCCTTTGACATGAAGCCAAAACCAAAACTTTGATCTAACAGATATCTCAAATACCTTAGTCCTAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCAACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCC-TGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATCCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCA-TGGAAGACATTCT-TGTAGA-CCTGCCTGCCGCCTAC-CGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGCTCCAGCAATAAGCGATGGAGGGAAGGGTGTC] [-] EMBL BM420526 [TTTTTCCGCTCAGGATGACA TGTGGTTCATAGA TTGAACTCGAGCACAAAAGAAGCCAAATAATCCTTGGACATGAAGCCAAAACCAAAACTTGGATCTAACAGATATCTCAAATACCTTAGTCCTAAACTTTGGATGGTTAATCATCCAACTGGCATTTCTCGACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCCGTGATCATCTTCAACCAGTATCTTCTNGCAAGCTTCATAGCACATGAATGAGATCCCAGCCGCAGGCATCAGCTTGATGCAGCTCGG CCAAGCCCCTNGTAAAGGCCG CAATCCCTTCATTCTCCATTATGCAATACAGAGCANTGGAAGACATTCTGTGTAGA CCTGCCTGCCGCCTAC CG TCCGACCTGCATTGGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCG GGGTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTG TTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGa ] [-] EMBL CB661915 [ TGACATTGTTGTTCATAGATTTGAACTCGAGCACAAAAGAAGCCAAATAATCCTTTGACATGAAGCCAAAGCCAAAGCTTTGATCTACCAGATATCTCAAATATCTTAGTCATAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCACCGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCC TGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCA TGGAAGACATTCT TGTAGAGACTGCCTGCCGCCTACGCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGC ] [+] EMBL CB644088 [ GTTCATAGATTTGAACTCGAGCACAAAAGAAGCCAAATAATCCTTTGACATGAAGCCAAAGCCAAAACTTTGATCTAACAGATATCTCAAATATCTTAGTCCTAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCAACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCC TGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCA TGGAAGACATTCT TGTAGA CCTGCCTGCCGCCTAC CGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGCTCCAGCAATAAGCGATGGAGGGAAGGGTGTC] [+] EMBL CB620934 [ TGACATGAAGCCAAAACCAGAACTTTGATCTAACAGATATCCCAAATACCTTACCCCTAAACTTTTGATTGGTAATCATCCAACTTGGATTTCTCCACGAAAGAAAAAAAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCC TGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATCCCAGCCGCAGGCATCATCTTGATGCAGCTCGGCCCAAGCCCCTTGGAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCA TGGAAGACATTCT TGGAAA CCTGCCTGCCGCCTAC CGCTCCGACCTGGATTTGCTTGCAAGCTACCTCCAAAGGGAAGGTGGCGGTGCTCTAGATGGCACCCGCGGCTGAACCGATGAAAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGGCTTCCTGAAAAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCACGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAATATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGC ] consensusID : consensus_9801#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 745 fasta sequence [TCTTTTTAAGTTTTTTTTTTTAAGCCAAATAATCCTTTGACATCAAGCCAAAGCCAAAACTTTGATCTAACAGATATCTCAAATATCTTAGTCCTAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCAACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCCTGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCATGGAAGACATTCTTGTAGACCTGCCTGCCGCCTACCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGCTCCAGCAATAAGCG] [+] EMBL CB656299 [TCTTTTTAAGTTTTTTTTTTTAAGCCAAATAATCCTTTGACATCAAGCCAAAGCCAAAACTTTGATCTAACAGATATCTCAAATATCTTAGTCCTAAACTTTTGATTGTTAATCATCCAACTTGCATTTCTCAACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACTATCCTGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCCAGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCCTTCATTCTCCATTATGCAATACAGAGCATGGAAGACATTCTTGTAGACCTGCCTGCCGCCTACCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGAGATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTTGAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTATGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTCTCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAATCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGCTCCAGCAATAAGCG] consensusID : consensus_9801#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 484 fasta sequence [TTTTTTTTTTCCGCTCAGGATGACATGGTGGTCCACTAAATTGGAACTCGAGCACAAAAGAAGCCAAATAATCCTTGGGACAGTGAAGCCAAAACCAAAACTTGTGATCTAACGAGNATATCTCAAATACCGTTAGTCCTAAACTTTGGATGGTATAACTCATCCAACGTGGCNTTTCTCTCGCGAGAGCGAAAGAGAAAAAAAAGAGAAATCGAGAGGGGATCTCTATTCTTTCTCTTTACAGAGAAGCCACCTAGTGGGCTTACATCTCCATCTAATACGTCGTGGTATACTATTTCTTCAACCCGAGATATTCTTTCTGTGGCAGAGCTCTTCTGAGCGACACACAGTGAGAGTAGTGAGAGATAATCCCCAGCGCGCGCGGAGAGGGGACTATAACGAGGTCTGTGAGAGTAGCGCAGGTCTCGCGGGGCCACAAGAAGCCCCTCTGTGTGTAGAGAGGGGCGCGGCCAAATTTCGCCCC] [-] EMBL BQ907996 [TTTTTTTTTTCCGCTCAGGATGACATGGTGGTCCACTAAATTGGAACTCGAGCACAAAAGAAGCCAAATAATCCTTGGGACAGTGAAGCCAAAACCAAAACTTGTGATCTAACGAGNATATCTCAAATACCGTTAGTCCTAAACTTTGGATGGTATAACTCATCCAACGTGGCNTTTCTCTCGCGAGAGCGAAAGAGAAAAAAAAGAGAAATCGAGAGGGGATCTCTATTCTTTCTCTTTACAGAGAAGCCACCTAGTGGGCTTACATCTCCATCTAATACGTCGTGGTATACTATTTCTTCAACCCGAGATATTCTTTCTGTGGCAGAGCTCTTCTGAGCGACACACAGTGAGAGTAGTGAGAGATAATCCCCAGCGCGCGCGGAGAGGGGACTATAACGAGGTCTGTGAGAGTAGCGCAGGTCTCGCGGGGCCACAAGAAGCCCCTCTGTGTGTAGAGAGGGGCGCGGCCAAATTTCGCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9801#0 -----TTTTTCCGCTCAGGATGACATGTGGTTCA--TAGATTTGAACTCGAGCACAAAAG 53 consensus_9801#1 ------------------------------------TCTTTTTAAGTTTTTTTTTTTAA- 23 consensus_9801#2 TTTTTTTTTTCCGCTCAGGATGACATGGTGGTCCACTAAATTGGAACTCGAGCACAAAAG 60 * ** * * ** consensus_9801#0 AAGCCAAATAATCCTTTG-ACA-TGAAGCCAAAACCAAAACTT-TGATCTAACA--GATA 108 consensus_9801#1 --GCCAAATAATCCTTTG-ACA-TCAAGCCAAAGCCAAAACTT-TGATCTAACA--GATA 76 consensus_9801#2 AAGCCAAATAATCCTTGGGACAGTGAAGCCAAAACCAAAACTTGTGATCTAACGAGNATA 120 ************** * *** * ******** ********* ********* *** consensus_9801#0 TCTCAAATACC-TTAGTCCTAAACTTTTGAT--TGTTAATCATCCAACTTG-CATTTCTC 164 consensus_9801#1 TCTCAAATATC-TTAGTCCTAAACTTTTGAT--TGTTAATCATCCAACTTG-CATTTCTC 132 consensus_9801#2 TCTCAAATACCGTTAGTCCTAAACTTTGGATGGTATAACTCATCCAACGTGGCNTTTCTC 180 ********* * *************** *** * * * ********* ** * ****** consensus_9801#0 A-ACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACT 223 consensus_9801#1 A-ACGAAAGAAAAAGAACTAGGGGACTCATCTTCCTTCAAGAGCACATGCTTCACTCACT 191 consensus_9801#2 TCGCGAGAGCGAAAGAGAAAAAAAAGAGAA-----ATCGAGAGGGGAT--------CTCT 227 *** ** ***** * * * ** **** ** * ** consensus_9801#0 ATCCTGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATCCC 283 consensus_9801#1 ATCCTGATCATCTTCAACCAGTATCTTCTTGCAAGCTTCATAGCACATGAATGAGATTCC 251 consensus_9801#2 ATTCT--TTCTCTTTACAGAGAAGCCACCTAGTGGGCTTACATCTC---CATCTAATAC- 281 ** ** * **** * ** * * * * * * * * * * ** ** * consensus_9801#0 AGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCC 343 consensus_9801#1 AGCCGCAGGCATCAGCTTGATGCAGCTCGGCCCAAGCCCCTTGTAAAGGCCGCCAATCCC 311 consensus_9801#2 -GTCGT-GGTATACTATTTCTTCAACCCGAGATATTCTTTCTGTG------GCAGAGCTC 333 * ** ** ** ** * ** * ** * * *** ** * * * consensus_9801#0 TTCATTCTCCATTATGCAATACAGAGCATGGAAGACATTCTTGTAGACCTGCCTGCCGCC 403 consensus_9801#1 TTCATTCTCCATTATGCAATACAGAGCATGGAAGACATTCTTGTAGACCTGCCTGCCGCC 371 consensus_9801#2 TTC--TGAGCGACACACAGTGAGAGTAGTGAGAGATAATC-----------CCCAGCGC- 379 *** * * * ** * ** *** * ** ** *** consensus_9801#0 TACCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGA 463 consensus_9801#1 TACCGCTCCGACCTGCATTTGCTTGCGAGCTACCTCGAGAGGGAAGGTGGCGGTGCTCGA 431 consensus_9801#2 ----GCGCGGAGAGGGGACTA-TAACGAGGT---CTGTGAGAGTAGC--GCAGGTCTCGC 429 ** * ** * * * **** * * *** * ** ** * **** consensus_9801#0 GATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTT 523 consensus_9801#1 GATGGCACCCGCGGCTGAACCGATGAGAAGAGTCGCGATGTTGCTGATCTCCTCCTGCTT 491 consensus_9801#2 GGGGCCACAAGAAGCCCCTCTG-TGTGTAGAGA-GGGGCGCGGCCAAATTTCGCCCC--- 484 * * *** * ** * * ** * **** * * * ** * * * ** consensus_9801#0 GAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTA 583 consensus_9801#1 GAATGTCTTCCTGTAGAGCTTCTTCAGGGTGTCGTAGGCATAGTAATTGGTTGCAGCGTA 551 consensus_9801#2 ------------------------------------------------------------ consensus_9801#0 TGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTC 643 consensus_9801#1 TGGCACCACGCCGATCAGACTCGGTGTCAGCCCGCGGTAGAGCTCTGAGGGGCCTTCCTC 611 consensus_9801#2 ------------------------------------------------------------ consensus_9801#0 TCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAA 703 consensus_9801#1 TCGTAGTATCTTGACGAAAGCATGGAGGAAGTTGTTATAGACATCTTTCTCAATAGTCAA 671 consensus_9801#2 ------------------------------------------------------------ consensus_9801#0 TCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGC 763 consensus_9801#1 TCGGGTCTTGATCAATTCCAAGGGGTATGTGCACAATGTTGAGCTAACCCCAGCAAGTGC 731 consensus_9801#2 ------------------------------------------------------------ consensus_9801#0 TCCAGCAATAAGCGATGGAGGGAAGGGTGTC 794 consensus_9801#1 TCCAGCAATAAGCG----------------- 745 consensus_9801#2 ------------------------------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||