These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9807#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 840 fasta sequence [ACGACTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCG-ACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTT-GGACA-TCCA-TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGGAGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCAGAAAAAAAACTGGATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCCGTGATTTGAACGGTAGCTTAAATAAATCTTTTGGTTGTGTAACTTGTTCATCTTGATGGAATTACCAAACCACACTTTCCCTTTCTGTTCACAGAATGCATTTGATNCCAAAAAAAAAAAA] [+] EMBL BP184991 [ACGAGGAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCG ACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTTGGGACATTCCATTTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAA ] [+] EMBL AK062729 [ CTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCG ACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTT GGACA TCCA TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGGAGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCAGAAAAAAAACTGGATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCCGTGATTTGAACGGTAGCTTAAATAAATCTT ] [+] EMBL CF294252 [ CTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCTTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCG ACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAAGCAAGTCGGGGTTTTCTT GGACA TCCA TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGGAGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACATGCAGCTTAA ] [+] EMBL CF305294 [ ACCGAAGGCGTTGAGAGTTGCGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCAAGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACCTGCCGCTGCTCAACACCT ATTTTTAGGTTAACGACGGCTTCCCGCCGGCCGTCGAGGCGTTCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTT GGACA TCCA TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATT ] [-] EMBL CA763023 [ TTATTG GCAAGTTGACATCCCCGACCTCCGGTTGCTCAACACCGCCCATGGAGGTTGAAGGGGGCTTCCCCGCGGCCGTTGAGGCGTTCCGGGCCAGTGTCCGCGATGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACTCCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGGCTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGTACCACATCAGGCAAGTCGGGGTTTTCTT GGACA TCCA TTTCATCAACAAGCCTGAAGTGTTCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGTAATTTGATTGATCCGGAGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCCAGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCAGAAAAAAAACTGGATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCCGTGATTTGAACGGTAGCTTAAATAAATCTTTTGGTTGTGTAACTTGTTCATCTTGATGGAATTACCAAACCACACTTTCCCTTTCTGTTCACAGAATGCATTTGATNCCAAAAAAAAAAAA] consensusID : consensus_9807#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 186 fasta sequence [AGCGGGTTTTCATAAAAAAAAACTGGATAAATAGCACTCATTGGATTATAGGACAACTTATCTTAACGCCGAACAATTGTGTAACCGTGATTTGAACGGTAGCTTAAATCAATCTTTTGGTTGTGTAACTTGTTCATCGTGATGGAATTACCAACCCGCACTTTCCTTTTCTGTTCAAAAAAAAAA] [-] EMBL CF294253 [AGCGGGTTTTCATAAAAAAAAACTGGATAAATAGCACTCATTGGATTATAGGACAACTTATCTTAACGCCGAACAATTGTGTAACCGTGATTTGAACGGTAGCTTAAATCAATCTTTTGGTTGTGTAACTTGTTCATCGTGATGGAATTACCAACCCGCACTTTCCTTTTCTGTTCAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9807#0 ACGACTAAACCGATCCCAAGAAAATGGAAGGCTCGACGTCACCGAAGGCGTTGAGAGTTG 60 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 CGGCGATCTCCGGCTCGCTGCGGAGGGGCTCCGCCAACACCGGCCTCATCCGCGCCGCCA 120 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 AGGAGATATGCGAGGAGTCCATCCCGGGGATGGTTATTGACCACGTCGACATCCCCGACC 180 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 TGCCGCTGCTCAACACCGACATGGAGGTTGACGACGGCTTCCCGCCGGCCGTCGAGGCGT 240 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 TCCGGGCCAGTGTCCGCGCTGCCGACTGCTTCCTCTTCGCCTCTCCCGAGTACAACTACT 300 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 CCATCTCAGGTCCTCTGAAGAACGCGTTGGACTGGGGATCAAGGCCGCCCAACTGCTGGG 360 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 CTGACAGAGCCGCCGCCATCGTGAGCGCGTCCGGAGGCTCCGGTGGCAGCCGATCAATGT 420 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 ACCACATCAGGCAAGTCGGGGTTTTCTTGGACATCCATTTCATCAACAAGCCTGAAGTGT 480 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 TCATCAAAGCACATCAGCCTCCGAAAAAATTCGACAGCGATGGCAATTTGATTGATCCGG 540 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 AGATTAAAGAAGAGCTCAAGGATATGCTCCTGTCACTGCAAGCTTTCGCCCTGAGGCTCC 600 consensus_9807#1 ------------------------------------------------------------ consensus_9807#0 AGGGCAAACCTGCAAACTCTAAACATGCAGCTTAAGCGGGTTTTCA-GAAAAAAAACTGG 659 consensus_9807#1 ----------------------------------AGCGGGTTTTCATAAAAAAAAACTGG 26 ************ ************ consensus_9807#0 ATGAATAGAACTCATTGGATTCTAGGACAACTTATCTTAACGCCGAACAATTGTGTAGCC 719 consensus_9807#1 ATAAATAGCACTCATTGGATTATAGGACAACTTATCTTAACGCCGAACAATTGTGTAACC 86 ** ***** ************ *********************************** ** consensus_9807#0 GTGATTTGAACGGTAGCTTAAATAAATCTTTTGGTTGTGTAACTTGTTCATCTTGATGGA 779 consensus_9807#1 GTGATTTGAACGGTAGCTTAAATCAATCTTTTGGTTGTGTAACTTGTTCATCGTGATGGA 146 *********************** **************************** ******* consensus_9807#0 ATTACCAAACCACACTTTCCCTTTCTGTTCACAGAATGCATTTGATNCCAAAAAAAAAAA 839 consensus_9807#1 ATTACCAACCCGCACTTTCCTTTTCTGTTCAAAAAAAAAA-------------------- 186 ******** ** ******** ********** * ** * consensus_9807#0 A 840 consensus_9807#1 - |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||