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Oryza sativa
cluster # 9808 cluster # 9808       Sequences # 6       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9808#0 length = 2054 sequences # 4  
consensus_9808#1 length = 750 sequences # 1  
consensus_9808#2 length = 535 sequences # 1  

consensusID : consensus_9808#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 2054
fasta sequence
                              [GATCGAGACTGCCAATGTTTGAAGTGGTTTTCAAAGGTCTAACACTGTCCATTGGAAAAAAGAAACTTCTGCAGTGTGTTACTGGAAAACTTTCACCAGGTAGGGTAACAGCCATCATGGGTCCTTCTGGAGCAGGAAAGACTACTTTTCTCAATGCTGTGTTAGGTAAAACAACTGGATATAAGAAGGACGGGTTAGTTCTTATAAATGGAAAATCTGGATCAATGCAGTCATATAAGAAGATCATTGGTTTTGTGCCACAAGATGACATTGTCCATGGGAACTTGACGGTTGAGGAAAACTTGTGGTTTAGTGCGTGCTGCAGGTCAAGCAAAGGCATGTCAAAATCTGATAAGATTATAGTTCTTGAACGGGTTATCGGGTCATTAGGGCTTCAAGAAATCAGAAATTCCCTTGTTGGAACAGTGGAGAAGCGGGGTATTTCCGGAGGACAAAGGAAGCGTGTAAATGTTGGAATTGAAATGGTTATGGAACCTTCTCTTCTTATTTTAGATGAGCCAACTACAGGCTTGGACAGTGCTTCCTCTCAGCTACTTTTAAGAGCTCTTCGTCATGAAGCACTCCAAGGCGTAAATGTTTGTGCAGTGATTCACCAACCAAGCTATACTTTGTTCAACATGTTTGATGACTTTGTTCTTTTGGCAAGAGGTGGTCTTATTGCTTACCTTGGACCTATAAGTGAAGTTGAAACATACTTCTCAAGCCTGGGGATTAAGGTTCCTGAGCGTGAGAATCCTCCAGACTACTATATTGACATCTTAGAGGGAATAACAAAAACTAAAATGAGGGGACATGCTGCTCCTAAACACTTGCCACTTCTTTGGATGCTACGTAATGGATATGAAGTTCCAGAATATATGCAGAAAGATCTTGAGGATATCAATAATGTTCATGAGTTATATACTGTTGGATCCATGTCTAGGGAAGAGTCTTTTGGTGATCAGTCAGAGAATGCAGATTCAGTGCACCAAAATGTCAGGGAACCATACAGTTTACTTGATAGGAAAACACCTGGTGTACTTGCACAATACAAATATTATTTGGGGAGGGTAACTAAGCAACGCCTACGTGAAGCTACACTACAAGCTGTTGATTACTTAATATTGTGTATCGCCGGCATATGCATTGGAACAATTGCTAAAGTTAAAGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGCAATATTGGAGGGGAAGAGAATCTGGCATGAGCACTCTAGCTTATTTTCTTGCAAGAGATACAATTGACCATTTCAACACCTTGGTGAAGCCAGTTGCCTTCCTCTAGACATTTTATTTCTTCAACAACCCACGTTCTGAATTTAAAGACAACTATTTGGTGTTTTTGGCACTGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAGCTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCAACCAAACATTCCAAACTTTATAAAGGGATTATGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTGCAGGAGC-AAAAAATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGCATCGTCATTGTCATGCTCATGGGGGTACTCTTCCGGTTTATCGCTCTGCTTAGCCTGTTGAAGTTAAAATAGATCAGGGCAGGTAAAAACAAGGGTTGTGTTTTGTTGTCTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGTTCTGGAATTTGTACATAAGATTACTGCAATGATAGCATTTTTGTACAGATTTTTACAAATTTGCACCATCAATTTTTCTTATAATTGGAACATTAGTCCATATTTTTTTGTATATAGTATATAGTGCACAAATAAGACTGTTATACATGTAAATTTGTCATTGCCCTATTCAAGGGTAAATAAATTTCGGCTCATCT]

[+] EMBL CB674800             [GATCGAGACTGCCAATGTTTGAAGTGGTTTTCAAAGGTCTAACACTGTCCATTGGAAAAAAGAAACTTCTGCAGTGTGTTACTGGAAAACTTTCACCAGGTAGGGTAACAGCCATCATGGGTCCTTCTGGAGCAGGAAAGACTACTTTTCTCAATGCTGTGTTAGGTAAAACAACTGGATATAAGAAGGACGGGTTAGTTCTTATAAATGGAAAATCTGGATCAATGCAGTCATATAAGAAGATCATTGGTTTTGTGCCACAAGATGACATTGTCCATGGGAACTTGACGGTTGAGGAAAACTTGTGGTTTAGTGCGTGCTGCAGGTCAAGCAAAGGCATGTCAAAATCTGATAAGATTATAGTTCTTGAACGGGTTATCGGGTCATTAGGGCTTCAAGAAATCAGAAATTCCCTTGTTGGAACAGTGGAGAAGCGGGGTATTTCCGGAGGACAAAGGAAGCGTGTAAATGTTGGAATTGAAATGGTTATGGAACCTTCTCTTCTTATTTTAGATGAGCCAACTACAGGCTTGGACAGTGCTTCCTCTCAGCTACTTTTAAGAGCTCTTCGTCATGAAGCACTCCAAGGCGTAAATGTTTGTGCAGTGATTCACCAACCAAGCTATACTTTGTTCAACATGTTTGATGACTTTGTTCTTTTGGCAAGAGGTGGTCTTATTGCTTACCTTGGACCTATAAGTGAAGTTGAAACATACTTCTCAAGCCTGGGGATTAAGGTTCCTGAGCGTGAGAATCCTCCA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL CB642161             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AATTGAAATGGTTATGGAACCTTCTCTTCTTATTTTAGATGAGCCAACTACAGGCTTGGACAGTGCTTCCTCTCAGCTACTTTTAAGAGCTCTTCGTCATGAAGCACTCCAAGGCGTAAATGTTTGTGCAGTGATTCACCAACCAAGCTATACTTTGTTCAACATGTTTGATGACTTTGTTCTTTTGGCAAGAGGTGGTCTTATTGCTTACCTTGGACCTATAAGTGAAGTTGAAACATACTTCTCAAGCCTGGGGATTAAGGTTCCTGAGCGTGAGAATCCTCCAGACTACTATATTGACATCTTAGAGGGAATAACAAAAACTAAAATGAGGGGACATGCTGCTCCTAAACACTTGCCACTTCTTTGGATGCTACGTAATGGATATGAAGTTCCAGAATATATGCAGAAAGATCTTGAGGATATCAATAATGTTCATGAGTTATATACTGTTGGATCCATGTCTAGGGAAGAGTCTTTTGGTGATCAGTCAGAGAATGCAGATTCAGTGCACCAAAATGTCAGGGAACCATACAGTTTACTTGATAGGAAAACACCTGGTGTACTTGCACAATACAAATATTATTTGGGGAGGGTAACTAAGCAACGCCTACGTGAAGCTACACTACAAGCTGTTGATTACTTAATATTGTGTATCGCCGGCATATGCATTGGAACAATTGCTAAAGTTAAAGATGATACATTCGGTGTAGCTTCATATGGATATACCATAATTGCAGTCTCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGCAATATTGGAGGGGAAGAGAATCTGGCATGAGCACTCTAGCTTA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       ]
[-] EMBL CB642162             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CTTGCAGCACTGCGGTCATTTTCACCAGAAAGATTGCAATATTGGAGGGAAAGAGAATCTGGCATGAGCACTCTAGCTTATTTTCTTGCAAGAGATACAATTGACCATTTCAACACCTTGGTGAAGCCAGTTGCCTTCCTCTAGACATTTTATTTCTTCAACAACCCACGTTCTGAATTTAAAGACAACTATTTGGTGTTTTTGGCACTGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAGCTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCAACCAAACATTCCAAACTTTATAAAGGGATTATGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTGCAGGAGC AAAAAATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGCATCGTCATTGTCATGCTCATGGGGGTACTCTTCCGGTTTATCGCTCTGCTTAGCCTGTTGAAGTTAAAATAGATCAGGGCAGGTAAAAACAAGGGTTGTGTTTTGTTGTCTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGTTCTGGAATTTGTACATAAGATTACTGCAATGATAGCATTTTTGTACAGATTTTTACAAATTTGCACCATCAATTTTTCTTATAATTGGAACATTAGTCCATATTTTTTTGTATATAGTATATAGTGCACAAATAAG                                                             ]
[-] EMBL CB674801             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        CTAGCTTATTTTCTTGCAAGAGATACAATTGACCATTTCAACACCTTGGTGAAGCCAGTTGCCTTCCTCTCGACATTTTATTTCTTCAACAACCCACGTTCTGAATTTAAAGACAACTATTTGGTGTTTTTGGCACTGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAGCTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCAACCAAACATTCCAAACTTTATAAAGGGATTATGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTGCAGGAGCAAAAAAATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGCATCGTCATTGTCATGCTCATGGGGGTACTCTTCCGGTTTATCGCTCTGCTTAGCCTGTTGAAGCTAAAATAGATCAGGGCAGGTAAAAACAAGGGTTGTGTTTTGTTGTCTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGTTCTGGAATTTGTACATAAGATTACTGCAATGATAGCATTTTTGTACAGATTTTTACAAATTTGCACCATCAATTTTTCTTATAATTGGAACATTAGTCCATATTTTTTTGTATATACTATATAGTGCACAAATAAGACTGTTATACATGTAAATTTGTCATTGCCCTATTCAAGGGTAAATAAATTTCGGCTCATCT]


>consensus_9808#0 GATCGAGACTGCCAATGTTTGAAGTGGTTTTCAAAGGTCTAACACTGTCCATTGGAAAAA AGAAACTTCTGCAGTGTGTTACTGGAAAACTTTCACCAGGTAGGGTAACAGCCATCATGG GTCCTTCTGGAGCAGGAAAGACTACTTTTCTCAATGCTGTGTTAGGTAAAACAACTGGAT ATAAGAAGGACGGGTTAGTTCTTATAAATGGAAAATCTGGATCAATGCAGTCATATAAGA AGATCATTGGTTTTGTGCCACAAGATGACATTGTCCATGGGAACTTGACGGTTGAGGAAA ACTTGTGGTTTAGTGCGTGCTGCAGGTCAAGCAAAGGCATGTCAAAATCTGATAAGATTA TAGTTCTTGAACGGGTTATCGGGTCATTAGGGCTTCAAGAAATCAGAAATTCCCTTGTTG GAACAGTGGAGAAGCGGGGTATTTCCGGAGGACAAAGGAAGCGTGTAAATGTTGGAATTG AAATGGTTATGGAACCTTCTCTTCTTATTTTAGATGAGCCAACTACAGGCTTGGACAGTG CTTCCTCTCAGCTACTTTTAAGAGCTCTTCGTCATGAAGCACTCCAAGGCGTAAATGTTT GTGCAGTGATTCACCAACCAAGCTATACTTTGTTCAACATGTTTGATGACTTTGTTCTTT TGGCAAGAGGTGGTCTTATTGCTTACCTTGGACCTATAAGTGAAGTTGAAACATACTTCT CAAGCCTGGGGATTAAGGTTCCTGAGCGTGAGAATCCTCCAGACTACTATATTGACATCT TAGAGGGAATAACAAAAACTAAAATGAGGGGACATGCTGCTCCTAAACACTTGCCACTTC TTTGGATGCTACGTAATGGATATGAAGTTCCAGAATATATGCAGAAAGATCTTGAGGATA TCAATAATGTTCATGAGTTATATACTGTTGGATCCATGTCTAGGGAAGAGTCTTTTGGTG ATCAGTCAGAGAATGCAGATTCAGTGCACCAAAATGTCAGGGAACCATACAGTTTACTTG ATAGGAAAACACCTGGTGTACTTGCACAATACAAATATTATTTGGGGAGGGTAACTAAGC AACGCCTACGTGAAGCTACACTACAAGCTGTTGATTACTTAATATTGTGTATCGCCGGCA TATGCATTGGAACAATTGCTAAAGTTAAAGATGATACATTCGGTGTAGCTTCATATGGAT ATACCATAATTGCAGTCTCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAG AAAGATTGCAATATTGGAGGGGAAGAGAATCTGGCATGAGCACTCTAGCTTATTTTCTTG CAAGAGATACAATTGACCATTTCAACACCTTGGTGAAGCCAGTTGCCTTCCTCTAGACAT TTTATTTCTTCAACAACCCACGTTCTGAATTTAAAGACAACTATTTGGTGTTTTTGGCAC TGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAG CTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCAACCAAACA TTCCAAACTTTATAAAGGGATTATGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTG CAGGAGCAAAAAATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGG TGGTTATGATATCAACAACTTTGTTCTTTGCATCGTCATTGTCATGCTCATGGGGGTACT CTTCCGGTTTATCGCTCTGCTTAGCCTGTTGAAGTTAAAATAGATCAGGGCAGGTAAAAA CAAGGGTTGTGTTTTGTTGTCTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGTTCT GGAATTTGTACATAAGATTACTGCAATGATAGCATTTTTGTACAGATTTTTACAAATTTG CACCATCAATTTTTCTTATAATTGGAACATTAGTCCATATTTTTTTGTATATAGTATATA GTGCACAAATAAGACTGTTATACATGTAAATTTGTCATTGCCCTATTCAAGGGTAAATAA ATTTCGGCTCATCT



consensusID : consensus_9808#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 750
fasta sequence
                              [TGAGCACTCTAGCTTATTTTCTTGCAAGAGATACAATTGACCATTTCAACACCTTGGTGAAGCCAGTTGCCTTCCTCTCGACATTTTATTTCTTCAACAACCCACGTTCTGAATTTAAAGACAACTATTTGGTGTTTTTGGCACTGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAGCTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCAACCAAACATTCCAAACTTTATAAAGGGATTATGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTGCAGGAGCAAAAAAATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGCATCGTCATTGTCATGCTCATGGGGGTACTCTTCCGGTTTATCGCTCTGCTTAGCCTGTTGAAGCTAAAATAGATGGCAGGTAAAAACAAGGGTTGTGTTTTGTTGTCTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGTTCTGGAATTTGTACATAAGATTACTGCAATGATAGCATTTTTGTACAGATTTTTACAAATTTGCACCATCAATTTTTCTTATAATTGGAACATTAGTCCATATTTTTTTGTATATACTATATAGTGCACAAATAAGACTGTTATACATGGAAATTTGTCATTGCCCTATTCAGTAATAAAAAAAAAAAAGG]

[-] EMBL CB681706             [TGAGCACTCTAGCTTATTTTCTTGCAAGAGATACAATTGACCATTTCAACACCTTGGTGAAGCCAGTTGCCTTCCTCTCGACATTTTATTTCTTCAACAACCCACGTTCTGAATTTAAAGACAACTATTTGGTGTTTTTGGCACTGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAGCTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCAACCAAACATTCCAAACTTTATAAAGGGATTATGCTATCCCAAATGGGCACTAGAGGCTCTCATTATTGCAGGAGCAAAAAAATATTCCGGCGTGTGGCTGATTACTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGCATCGTCATTGTCATGCTCATGGGGGTACTCTTCCGGTTTATCGCTCTGCTTAGCCTGTTGAAGCTAAAATAGATGGCAGGTAAAAACAAGGGTTGTGTTTTGTTGTCTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGTTCTGGAATTTGTACATAAGATTACTGCAATGATAGCATTTTTGTACAGATTTTTACAAATTTGCACCATCAATTTTTCTTATAATTGGAACATTAGTCCATATTTTTTTGTATATACTATATAGTGCACAAATAAGACTGTTATACATGGAAATTTGTCATTGCCCTATTCAGTAATAAAAAAAAAAAAGG]


>consensus_9808#1 TGAGCACTCTAGCTTATTTTCTTGCAAGAGATACAATTGACCATTTCAACACCTTGGTGA AGCCAGTTGCCTTCCTCTCGACATTTTATTTCTTCAACAACCCACGTTCTGAATTTAAAG ACAACTATTTGGTGTTTTTGGCACTGGTTTATTGTGTAACTGGCATAGGTTATACTTTTG CTATTTGGTTTGAGCTCGGATTAGCTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGG TTTTGGTAGGCACTCAACCAAACATTCCAAACTTTATAAAGGGATTATGCTATCCCAAAT GGGCACTAGAGGCTCTCATTATTGCAGGAGCAAAAAAATATTCCGGCGTGTGGCTGATTA CTCGATGTGGAGCACTGCTAAAAGGTGGTTATGATATCAACAACTTTGTTCTTTGCATCG TCATTGTCATGCTCATGGGGGTACTCTTCCGGTTTATCGCTCTGCTTAGCCTGTTGAAGC TAAAATAGATGGCAGGTAAAAACAAGGGTTGTGTTTTGTTGTCTTGAAGAGTACAGAAGA GTGAAGAATAGAGGAAGGTTCTGGAATTTGTACATAAGATTACTGCAATGATAGCATTTT TGTACAGATTTTTACAAATTTGCACCATCAATTTTTCTTATAATTGGAACATTAGTCCAT ATTTTTTTGTATATACTATATAGTGCACAAATAAGACTGTTATACATGGAAATTTGTCAT TGCCCTATTCAGTAATAAAAAAAAAAAAGG



consensusID : consensus_9808#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 535
fasta sequence
                              [GTTNAGAAAAGGGATTATGCNNATCCCACAATGGGCACCTAGAGGCTCTCATGTATTGCACGGAGCCAACAAAATAATTCCGGCGTCGTCGNCTGATTGACTCCGATCGTGGAGCACTGCTAAAAGGTGGGTTAATGATGATGCCACAAACTGTTGGTTGCTTGTGCATGCGTGCATTCGTGCATAGCTGCATGGGGGGACTGCTTGCCGGTGTTTATGCGCTGCTGGCTTATGCCTGCGTTGGAATGCTAATAATAGGATGGCAGGTAAAAACCAGGGTTGTGTTTTGTTGTCTTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGCTCCTGGAATTTGTACCATAAGATTACCTGCCACATGATAGCCACTTTTNTGTACCAGATTGTGTTACCTAATTNGCCACCCACTCAATTTTTCTTATAATTGGAACACTTAGTCCANATTTTTTTGTATATACTATATAGTGCACAAATAAGACTGTTATACAGTGTAAATTTGTCATTGCCCTATTCAGTGATAAAAAAAAAA]

[+] EMBL BQ905964             [GTTNAGAAAAGGGATTATGCNNATCCCACAATGGGCACCTAGAGGCTCTCATGTATTGCACGGAGCCAACAAAATAATTCCGGCGTCGTCGNCTGATTGACTCCGATCGTGGAGCACTGCTAAAAGGTGGGTTAATGATGATGCCACAAACTGTTGGTTGCTTGTGCATGCGTGCATTCGTGCATAGCTGCATGGGGGGACTGCTTGCCGGTGTTTATGCGCTGCTGGCTTATGCCTGCGTTGGAATGCTAATAATAGGATGGCAGGTAAAAACCAGGGTTGTGTTTTGTTGTCTTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGCTCCTGGAATTTGTACCATAAGATTACCTGCCACATGATAGCCACTTTTNTGTACCAGATTGTGTTACCTAATTNGCCACCCACTCAATTTTTCTTATAATTGGAACACTTAGTCCANATTTTTTTGTATATACTATATAGTGCACAAATAAGACTGTTATACAGTGTAAATTTGTCATTGCCCTATTCAGTGATAAAAAAAAAA]


>consensus_9808#2 GTTNAGAAAAGGGATTATGCNNATCCCACAATGGGCACCTAGAGGCTCTCATGTATTGCA CGGAGCCAACAAAATAATTCCGGCGTCGTCGNCTGATTGACTCCGATCGTGGAGCACTGC TAAAAGGTGGGTTAATGATGATGCCACAAACTGTTGGTTGCTTGTGCATGCGTGCATTCG TGCATAGCTGCATGGGGGGACTGCTTGCCGGTGTTTATGCGCTGCTGGCTTATGCCTGCG TTGGAATGCTAATAATAGGATGGCAGGTAAAAACCAGGGTTGTGTTTTGTTGTCTTTGAA GAGTACAGAAGAGTGAAGAATAGAGGAAGGCTCCTGGAATTTGTACCATAAGATTACCTG CCACATGATAGCCACTTTTNTGTACCAGATTGTGTTACCTAATTNGCCACCCACTCAATT TTTCTTATAATTGGAACACTTAGTCCANATTTTTTTGTATATACTATATAGTGCACAAAT AAGACTGTTATACAGTGTAAATTTGTCATTGCCCTATTCAGTGATAAAAAAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9808#0      GATCGAGACTGCCAATGTTTGAAGTGGTTTTCAAAGGTCTAACACTGTCCATTGGAAAAA 60
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      AGAAACTTCTGCAGTGTGTTACTGGAAAACTTTCACCAGGTAGGGTAACAGCCATCATGG 120
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      GTCCTTCTGGAGCAGGAAAGACTACTTTTCTCAATGCTGTGTTAGGTAAAACAACTGGAT 180
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      ATAAGAAGGACGGGTTAGTTCTTATAAATGGAAAATCTGGATCAATGCAGTCATATAAGA 240
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      AGATCATTGGTTTTGTGCCACAAGATGACATTGTCCATGGGAACTTGACGGTTGAGGAAA 300
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      ACTTGTGGTTTAGTGCGTGCTGCAGGTCAAGCAAAGGCATGTCAAAATCTGATAAGATTA 360
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TAGTTCTTGAACGGGTTATCGGGTCATTAGGGCTTCAAGAAATCAGAAATTCCCTTGTTG 420
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      GAACAGTGGAGAAGCGGGGTATTTCCGGAGGACAAAGGAAGCGTGTAAATGTTGGAATTG 480
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      AAATGGTTATGGAACCTTCTCTTCTTATTTTAGATGAGCCAACTACAGGCTTGGACAGTG 540
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      CTTCCTCTCAGCTACTTTTAAGAGCTCTTCGTCATGAAGCACTCCAAGGCGTAAATGTTT 600
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      GTGCAGTGATTCACCAACCAAGCTATACTTTGTTCAACATGTTTGATGACTTTGTTCTTT 660
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TGGCAAGAGGTGGTCTTATTGCTTACCTTGGACCTATAAGTGAAGTTGAAACATACTTCT 720
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      CAAGCCTGGGGATTAAGGTTCCTGAGCGTGAGAATCCTCCAGACTACTATATTGACATCT 780
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TAGAGGGAATAACAAAAACTAAAATGAGGGGACATGCTGCTCCTAAACACTTGCCACTTC 840
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TTTGGATGCTACGTAATGGATATGAAGTTCCAGAATATATGCAGAAAGATCTTGAGGATA 900
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TCAATAATGTTCATGAGTTATATACTGTTGGATCCATGTCTAGGGAAGAGTCTTTTGGTG 960
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      ATCAGTCAGAGAATGCAGATTCAGTGCACCAAAATGTCAGGGAACCATACAGTTTACTTG 1020
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      ATAGGAAAACACCTGGTGTACTTGCACAATACAAATATTATTTGGGGAGGGTAACTAAGC 1080
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      AACGCCTACGTGAAGCTACACTACAAGCTGTTGATTACTTAATATTGTGTATCGCCGGCA 1140
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TATGCATTGGAACAATTGCTAAAGTTAAAGATGATACATTCGGTGTAGCTTCATATGGAT 1200
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      ATACCATAATTGCAGTCTCGCTGTTATGCCAGCTTGCAGCACTGCGGTCATTTTCACCAG 1260
consensus_9808#1      ------------------------------------------------------------
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      AAAGATTGCAATATTGGAGGGGAAGAGAATCTGGCATGAGCACTCTAGCTTATTTTCTTG 1320
consensus_9808#1      ------------------------------------TGAGCACTCTAGCTTATTTTCTTG 24
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      CAAGAGATACAATTGACCATTTCAACACCTTGGTGAAGCCAGTTGCCTTCCTCTAGACAT 1380
consensus_9808#1      CAAGAGATACAATTGACCATTTCAACACCTTGGTGAAGCCAGTTGCCTTCCTCTCGACAT 84
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TTTATTTCTTCAACAACCCACGTTCTGAATTTAAAGACAACTATTTGGTGTTTTTGGCAC 1440
consensus_9808#1      TTTATTTCTTCAACAACCCACGTTCTGAATTTAAAGACAACTATTTGGTGTTTTTGGCAC 144
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAG 1500
consensus_9808#1      TGGTTTATTGTGTAACTGGCATAGGTTATACTTTTGCTATTTGGTTTGAGCTCGGATTAG 204
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      CTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCAACCAAACA 1560
consensus_9808#1      CTCAATTGTGTTCTGCGTTAATACCTGTGGTATTGGTTTTGGTAGGCACTCAACCAAACA 264
consensus_9808#2      ------------------------------------------------------------
                                                                                  

consensus_9808#0      TTCCAAACTTTATAAAGGGATTATGCTA-TCCCA-AATGGGCAC-TAGAGGCTCTCAT-T 1616
consensus_9808#1      TTCCAAACTTTATAAAGGGATTATGCTA-TCCCA-AATGGGCAC-TAGAGGCTCTCAT-T 320
consensus_9808#2      ------GTTNAGAAAAGGGATTATGCNNATCCCACAATGGGCACCTAGAGGCTCTCATGT 54
                              *    *************   ***** ********* ************* *

consensus_9808#0      ATTGCA-GGAGCAAA--AAA-TATTCCGGCGTG--TGGCTGATTA--CTCGAT-GTGGAG 1667
consensus_9808#1      ATTGCA-GGAGCAAA--AAAATATTCCGGCGTG--TGGCTGATTA--CTCGAT-GTGGAG 372
consensus_9808#2      ATTGCACGGAGCCAACAAAATAATTCCGGCGTCGTCGNCTGATTGACTCCGATCGTGGAG 114
                      ****** ***** **  ***  **********    * ******     **** ******

consensus_9808#0      CACTGCTAAAAGGTGGTT-----ATGATATCAACAACTTT--GTTCTTTGCAT---CGT- 1716
consensus_9808#1      CACTGCTAAAAGGTGGTT-----ATGATATCAACAACTTT--GTTCTTTGCAT---CGT- 421
consensus_9808#2      CACTGCTAAAAGGTGGGTTAATGATGATGCCACAAACTGTTGGTTGCTTGTGCATGCGTG 174
                      **************** *     *****  **  **** *  ***  ***      *** 

consensus_9808#0      CATT-GT-CAT-GCT-CATGGGGGTACTCTT--CCGGT--TTAT-CGCTCT--GCTTA-G 1764
consensus_9808#1      CATT-GT-CAT-GCT-CATGGGGGTACTCTT--CCGGT--TTAT-CGCTCT--GCTTA-G 469
consensus_9808#2      CATTCGTGCATAGCTGCATGGGGGGACTGCTTGCCGGTGTTTATGCGCTGCTGGCTTATG 234
                      **** ** *** *** ******** ***  *  *****  **** ****    ***** *

consensus_9808#0      CCTG--TTGAAGTTAAAATAG-ATCAGGGCAGGTAAAAACAAGGGTTGTGTTTTGTTGTC 1821
consensus_9808#1      CCTG--TTGAAGCTAAAATAG-AT---GGCAGGTAAAAACAAGGGTTGTGTTTTGTTGTC 523
consensus_9808#2      CCTGCGTTGGAATGCTAATAATAGGATGGCAGGTAAAAACCAGGGTTGTGTTTTGTTGTC 294
                      ****  *** *     ****  *    ************* *******************

consensus_9808#0      TT-GAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGTTC-TGGAATTTGTAC-ATAAGAT 1878
consensus_9808#1      TT-GAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGTTC-TGGAATTTGTAC-ATAAGAT 580
consensus_9808#2      TTTGAAGAGTACAGAAGAGTGAAGAATAGAGGAAGGCTCCTGGAATTTGTACCATAAGAT 354
                      ** ********************************* ** ************ *******

consensus_9808#0      TAC-TGCAA--TGATAGC-ATTTTTGTA---CAGATT---TTTACAAATTTGC-ACCA-- 1925
consensus_9808#1      TAC-TGCAA--TGATAGC-ATTTTTGTA---CAGATT---TTTACAAATTTGC-ACCA-- 627
consensus_9808#2      TACCTGCCACATGATAGCCACTTTTNTGTACCAGATTGTGTTACCTAATTNGCCACCCAC 414
                      *** *** *  ******* * **** *    ******   **  * **** ** ***   

consensus_9808#0      TCAATTTTTCTTATAATTGGAACA-TTAGTCCATATTTTTTTGTATATAGTATATAGTGC 1984
consensus_9808#1      TCAATTTTTCTTATAATTGGAACA-TTAGTCCATATTTTTTTGTATATACTATATAGTGC 686
consensus_9808#2      TCAATTTTTCTTATAATTGGAACACTTAGTCCANATTTTTTTGTATATACTATATAGTGC 474
                      ************************ ******** *************** **********

consensus_9808#0      ACAAATAAGACTGTTATACA-TGTAAATTTGTCATTGCCCTATTCAAGGGTAAATAAATT 2043
consensus_9808#1      ACAAATAAGACTGTTATACA-TGGAAATTTGTCATTGCCCTATTCAGTAATAAAAAAAAA 745
consensus_9808#2      ACAAATAAGACTGTTATACAGTGTAAATTTGTCATTGCCCTATTCAGTGATAAAAAAAAA 534
                      ******************** ** **********************    **** ***  

consensus_9808#0      TCGGCTCATCT 2054
consensus_9808#1      AAAGG------ 750
consensus_9808#2      A---------- 535
                                 




Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)