Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9812 cluster # 9812       Sequences # 6       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9812#0 length = 1088 sequences # 6  
consensusID : consensus_9812#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 1088
fasta sequence 
                              [CCGTTTTCAAAACTGACCCCTCCTCTCTCTCTCTCTATCTCTCCTCCTCCCTCATCCTCCTCTCCTCTCTGTGTTTCTCTCGTTCCTCGCTTCCTTCGCTTCGCCCCCCTTCTGGCATCCTTCCTCGCGCGGCCTCTCCCTCCCATGGTCCTCATGGCCGCCGTCGACGACCACGACCGCCACCGAGCCGGCAATTCCTCGTCTCCTTCGGAGGATTCCCCGGCTCCGGCTCCGGCTCCGGCTCCCGCTCCCGCTCCGCCGCAGCCGTCGCGCACGCGGCTCCACAGCTTCTCGTTCCCCACCCTCAGCTGGGGCACCCACCGCCTCCTCCGCTGCTCCAAGAACCCCGCCTCGTCGCCCCCTCCCGCGGCGCCGGACACCCCGTCGCCGGACAAGGAGAAGGCGGCCCACCGCTCCACCGACGGCGTGGGCGGCGGCTGTTCGCCTCAGCGGGGTCCGCAGCGGCCGTGGAACCTCCGCACCCGCCGCTCCGCCACGGCCGCGCCGCGTCCGGAGGGATCGGACGACGCGGCCGATGCCGCGCCGGATCGAGCGCCATCGCCGCTGGCGGCGACCAAGAAGCGGGTGTTCTCCATCGTGCTGTCCAAGGAGGAGATCGGCCAGGACTTCAAGGCGATCCGCGGGACTCGCCCCCCGCGCCGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCTCGACTTGCTGTA-CCCTGGATTGTGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAAGAGAGGTGATTGGTGTTATTTGTGAAAGCTCCAATGGGAGGGGATTTTCAGATGTTCTGATATCTTTTCTCTTCAGATGTTCTGATCGTTTTCCTTTTGTTATGTGATCATGGGCTAACAAGGTTGCTTCAGAACCGTAATGTTCTGGACGGGTTAGGGGAAGTTTAGTTGGGAATCTCCTCTAATTATGTATTGGATGTGGTTGTTGAGGAGTTTAGGTTGTGGAAATTGATTATTGGGCTTGTAGGATTGTTAATTGTATAAAGTGTAATCATCTGTACATTGTACTATTAATCTATGAAGAATTTTCGTTATTACGAAAAAAAAGA]

[+] EMBL AK072744             [CCGTTTTCAAAACTGACCCCTCCTCTCTCTCTCTCTATCTCTCCTCCTCCCTCATCCTCCTCTCCTCTCTGTGTTTCTCTCGTTCCTCGCTTCCTTCGCTTCGCCCCCCTTCTGGCATCCTTCCTCGCGCGGCCTCTCCCTCCCATGGTCCTCATGGCCGCCGTCGACGACCACGACCGCCACCGAGCCGGCAATTCCTCGTCTCCTTCGGAGGATTCCCCGGCTCCGGCTCCGGCTCCGGCTCCCGCTCCCGCTCCGCCGCAGCCGTCGCGCACGCGGCTCCACAGCTTCTCGTTCCCCACCCTCAGCTGGGGCACCCACCGCCTCCTCCGCTGCTCCAAGAACCCCGCCTCGTCGCCCCCTCCCGCGGCGCCGGACACCCCGTCGCCGGACAAGGAGAAGGCGGCCCACCGCTCCACCGACGGCGTGGGCGGCGGCTGTTCGCCTCAGCGGGGTCCGCAGCGGCCGTGGAACCTCCGCACCCGCCGCTCCGCCACGGCCGCGCCGCGTCCGGAGGGATCGGACGACGCGGCCGATGCCGCGCCGGATCGAGCGCCATCGCCGCTGGCGGCGACCAAGAAGCGGGTGTTCTCCATCGTGCTGTCCAAGGAGGAGATCGGCCAGGACTTCAAGGCGATCCGCGGGACTCGCCCCCCGCGCCGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCTCGACTTGCTGTA CCCTGGATTGTGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAAGAGAGGTGATTGGTGTTATTTGTGAAAGCTCCAATGGGAGGGGATTTTCAGATGTTCTGATATCTTTTCTCTTCAGATGTTCTGATCGTTTTCCTTTTGTTATGTGATCATGGGCTAACAAGGTTGCTTCAGAACCGTAATGTTCTGGACGGGTTAGGGGAAGTTTAGTTGGGAATCTCCTCTAATTATGTATTGGATGTGGTTGTTGAGGAGTTTAGGTTGTGGAAATTGATTATTGGGCTTGTAGGATTGTTAATTGTATAAAGTGTAATCATCTGTACATTGTACTATTAATCTATGAAGAATTTT                    ]
[+] EMBL AK099957             [                                            TCCTCCCTCATCCTCCTCTCCTCTCTGTGTTTCTCTCGTTCCTCGCTTCCTTCGCTTCGCCCCCCTTCTGGCATCCTTCCTCGCGCGGCCTCTCCCTCCCATGGTCCTCATGGCCGCCGTCGACGACCACGACCGCCACCGAGCCGGCAATTCCTCGTCTCCTTCGGAGGATTCCCCGGCTCCGGCTCCGGCTCCGGCTCCCGCTCCCGCTCCGCCGCAGCCGTCGCGCACGCGGCTCCACAGCTTCTCGTTCCCCACCCTCAGCTGGGGCACCCACCGCCTCCTCCGCTGCTCCAAGAACCCCGCCTCGTCGCCCCCTCCCGCGGCGCCGGACACCCCGTCGCCGGACAAGGAGAAGGCGGCCCACCGCTCCACCGACGGCGTGGGCGGCGGCTGTTCGCCTCAGCGGGGTCCGCAGCGGCCGTGGAACCTCCGCACCCGCCGCTCCGCCACGGCCGCGCCGCGTCCGGAGGGATCGGACGACGCGGCCGATGCCGCGCCGGATCGAGCGCCATCGCCGCTGGCGGCGACCAAGAAGCGGGTGTTCTCCATCGTGCTGTCCAAGGAGGAGATCGGCCAGGACTTCAAGGCGATCCGCGGGACTCGCCCCCCGCGCCGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCTCGACTTGCTGTA CCCTGGATTGTGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAAGAGAGGTGATTGGTGTTATTTGTGAAAGCTCCAATGGGAGGGGATTTTCAGATTTTCTGATATCTTTTCTCTTCAGATGTTCTGATCGTTTTCCTTTTGTTATGTGATCATGGGCTAACAAGGTTGCTTCAGAACCGTAATGTTCTGGACGGGTTAGGGGAAGTTTAGTTGGGAATCTCCTCTAATTATGTATTGGATGTGGTTGTTGAGGAGTTTAGGTTGTGGAAATTGATTATTGGGCTTGTAGGATTGTTAATTGTATAAAGTGTAATCATCTGTACATTGTACTATTAATCTATGAAG                          ]
[+] EMBL CB649860             [                                                                      GTGTTTCTCTCGTTCCTCGCTTCCTTCGCTTCGCCCCCCTTCTGGCATCCTTCCTCGCGCGGCCTCTCCCTCCCATGGTCCTCATGGCCGCCGTCGACGACCACGACCGCCACCGAGCCGGCAATTCCTCGTCTCCTTCGGAGGATTCCCCGGCTCCGGCTCCGGCTCCGGCTCCCGCTCCCGCTCCGCCGCAGCCGTCGCGCACGCGGCTCCACAGCTTCTCGTTCCCCACCCTCAGCTGGGGCACCCACCGCCTCCTCCGCTGCTCCAAGAACCCCGCCTCGTCGCCCCCTCCCGCGGCGCCGGACACCCCGTCGCCGGACAAGGAGAAGGCGGCCCACCGCTCCACCGACGGCGTGGGCGGCGGCTGTTCGCCTCAGCGGGGTCCGCAGCGGCCGTGGAACCTCCGCACCCGCCGCTCCGCCACGGCCGCGCCGCGTCCGGAGGGATCGGACGACGCGGCCGATGCCGCGCCGGATCGAGCGCCATCGCCGCTGGCGGCGACCAAGAAGCGGGTGTTCTCCATCGTGCTGTCCAAGGAGGAGATCGGCCAGGACTTCAAGGCGATCCGCGGGACTCGCCCCCCGCGCCGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCTCGACTTGCTGTA CCCTGGATTGTGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAAGAGAGGTGATTGGTGTTATTTGTGAAAGCTCCAATGGGAGGGGATTTTCAGATGTTCTGATATCTTTTCTCTTCAGATGTTCTGATCGTTTTCCTTTTGTTA                                                                                                                                                                                                                                   ]
[-] EMBL CB649861             [                                                                                                                                                                                                                                                                                                                                                             CCTCGTCGCCCCCTCCCGCGGCGCCGGACACCCCGTCGCCGGACAAGGAGAAGGCGGCCCACCGCTCCACCGACGGCGTGGGCGGCGGCTGTTCGCCTCAGCGGGGTCCGCAGCGGCCGTGGAACCTCCGCACCCGCCGCTCCGCCACGGCCGCGCCGCGTCCGGAGGGATCGGACGACGCGGCCGATGCCGCGCCGGATCGAGCGCCATCGCCGCTGGCGGCGACCAAGAAGCGGGTGTTCTCCATCGTGCTGTCCAAGGAGGAGATCGGCCAGGACTTCAAGGCGATCCGCGGGACTCGCCCCCCGCGCCGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCTCGACTTGCTGTA CCCTGGATTGTGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAAGAGAGGTGATTGGTGTTATTTGTGAAAGCTCCAATGGGAGGGGATTTTCAGATGTTCTGATATCTTTTCTCTTCAGATGTTCTGATCGTTTTCCTTTTGTTATGTGATCATGGGCTAACAAGGTTGCTTCAGAACCGTAATGTTCTGGACGGGTTAGGGGAAGTTTAGTTGGGAATCTCCTCTAATTATGTATTGGATGTGGTTGTTGAGGAGTTTAGGTTGTGGAAATTGATTATTGGGCTTGTAGGATTGTTAATTGTATAAAGTGTAATCATCTGTACATTGTACTATTAATCTATGAAGAATTTTCGTTATTACGAAAAAAAAGA]
[+] EMBL BQ906737             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CCATCGT CTGTCCAAGGAGGAGATCGGCCAGGACTTCAAGGCGATCCGCGGGACTCGCCCCCCGCGCCGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCTCGACTTGCTGTACCCCTGGATTGTGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAAGAGAGGTGATTGGTGTTATTTGTGAAAGCTCCAATGGGAGGGGATTTTCAGATGTTCTGATATCTTTTCTCTTCAGATGTTCTGATCGTTTTCCTTTTGTTATGTGATCATGGGCTAACAAGGTTGCTTCAGAACCGTAATGTTCTGGACGGGTTAGGGGAAGTTTAGTTGGGAATCTCCTCTAATTATGTATTGGATGTGGTTGTTGAGGAGTTTAGGTTGTGGAAATTGATTATTGGGCTTGTAGGATTGTTAATTGTATAAAGTGTAATCATCTGTACATTGTACTATTAATCTATGAAGAATTTTCGTTATTACGAAAAA     ]
[+] EMBL BQ906734             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               CGCGGGACTCGCCCCCCGCGCCGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCTCGACTTGCTGTA CCCTGGATTGTGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAAGAGAGGTGATTGGTGTTATTTGTGAAAGCTCCAATGGGAGGGGATTTTCAGATGTTCTGATATCTTTTCTCTTCAGATGTTCTGATCGTTTTCCTTTTGTTATGTGATCATGGGCTAACAAGGTTGCTTCAGAACCGTAATGTTCTGGACGGGTTAGGGGAAGTTTAGTTGGGAATCTCCTCTAATTATGTATTGGATGTGGTTGTTGAGGAGTTTAGGTTGTGGAAATTGATTATTGGGCTTGTAGGATTGTTAATTGTATAAAGTGTAATCATCTGTACATTGTACTATTAATCTATGAAGAATTTTCGTTATTACGAAAAA     ]




>consensus_9812#0
CCGTTTTCAAAACTGACCCCTCCTCTCTCTCTCTCTATCTCTCCTCCTCCCTCATCCTCC
TCTCCTCTCTGTGTTTCTCTCGTTCCTCGCTTCCTTCGCTTCGCCCCCCTTCTGGCATCC
TTCCTCGCGCGGCCTCTCCCTCCCATGGTCCTCATGGCCGCCGTCGACGACCACGACCGC
CACCGAGCCGGCAATTCCTCGTCTCCTTCGGAGGATTCCCCGGCTCCGGCTCCGGCTCCG
GCTCCCGCTCCCGCTCCGCCGCAGCCGTCGCGCACGCGGCTCCACAGCTTCTCGTTCCCC
ACCCTCAGCTGGGGCACCCACCGCCTCCTCCGCTGCTCCAAGAACCCCGCCTCGTCGCCC
CCTCCCGCGGCGCCGGACACCCCGTCGCCGGACAAGGAGAAGGCGGCCCACCGCTCCACC
GACGGCGTGGGCGGCGGCTGTTCGCCTCAGCGGGGTCCGCAGCGGCCGTGGAACCTCCGC
ACCCGCCGCTCCGCCACGGCCGCGCCGCGTCCGGAGGGATCGGACGACGCGGCCGATGCC
GCGCCGGATCGAGCGCCATCGCCGCTGGCGGCGACCAAGAAGCGGGTGTTCTCCATCGTG
CTGTCCAAGGAGGAGATCGGCCAGGACTTCAAGGCGATCCGCGGGACTCGCCCCCCGCGC
CGGCCCAAGAAGCGCCCCCGCACCGTGCAACGCCAGCTCGACTTGCTGTACCCTGGATTG
TGCCTAGCGGACCTGACGCCGGAGACATACAAGATTGAAGAGAGGTGATTGGTGTTATTT
GTGAAAGCTCCAATGGGAGGGGATTTTCAGATGTTCTGATATCTTTTCTCTTCAGATGTT
CTGATCGTTTTCCTTTTGTTATGTGATCATGGGCTAACAAGGTTGCTTCAGAACCGTAAT
GTTCTGGACGGGTTAGGGGAAGTTTAGTTGGGAATCTCCTCTAATTATGTATTGGATGTG
GTTGTTGAGGAGTTTAGGTTGTGGAAATTGATTATTGGGCTTGTAGGATTGTTAATTGTA
TAAAGTGTAATCATCTGTACATTGTACTATTAATCTATGAAGAATTTTCGTTATTACGAA
AAAAAAGA

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)