cluster # 9819

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Oryza sativa
cluster # 9819 cluster # 9819 Sequences # 6 consensus # 4

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9819#0 length = 1519 sequences # 2
consensus_9819#1 length = 913 sequences # 2

consensus_9819#2 length = 760 sequences # 1
consensus_9819#3 length = 633 sequences # 1

consensusID : consensus_9819#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1519
fasta sequence

                              [GCGGCGGCAGCGGCGGCGGAGGTGGCGGCGGCCGTATGCGGGAGAGAGAAAGAGCTCAGCTCGCATGGCCATCGCGGTGAGGTCGGCTGCGGCGGTGGCGAGGCACTCCCTGCGCCCTCCGCTGGCCGCGCCCGGCAGCATCCGCGGCGCCTCGCTCCTGCCGCCGCAGCGCGCGCGGCGAGCTCCTCCGCGACTGGAGGTGGCGGGCACCTTCCTCCGCTGTTCAGCGTGGCGCCGATGATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTGATCTCGAAGCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCAGAAAGATAACTTGGATAGATTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTGCAAATTGGTGGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGTTGCTTCGGTGCTCGCTTAATGTTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAATTGTAATGTCCCAGTCAGCGTTAAGTGCAGAATTGGTGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAGGTTGTTTCAAAATCACCAACTAGGCATTTCATTATTCATGCCCGGAAGGCATTGCTAAGTGGCCTCAGTCCTGCAGAAAATCGGAACGTTCCTCCTTTAAAATATGAATACTACTTTGCTTTATTGCGGGACTTCCCAGATGTGCAGTTTACTCTAAATGGAGGTATAACTACTATTGATCAAGTCACTGCATCCATAAGACAAGGTGCACATCGAGTTATGGTTGGCCGGGCTGCATATAATAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGGGATGCCGACAAGACGCTCTTCTCGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGATTCAATAATGGGCCAATATGGCCCCAGCAGACCAAACGTGAGACAACTTGTCAAGCCATTGTTAAATTTATTCCACTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGCTGACTCTACACTGCGTCATTGCAAGACACTTGAATCCTTCTTAGAGGAGACTCTTGACGCGATACCAAACTCTGTCCTTGACGCACCAATAGGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGATATGGATTCATTATTGCCGCCTAGATATTCATCACTGACCAACGGTAGCTGTGAAATTCCAGCACTTGTAACTGCATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACTGAAAAAAAAAGATAAGCCTGCAAGATTACTGTTATAATACAGACCCCTCCTGGGTTAGATTAGATACGCGGGAACACTATTGATTGTAAGTTGAAACAAACATCATGAAATGTGTATATATTCTTTTTTTTAAGGATATG]

[+] EMBL AK073070             [GCGGCGGCAGCGGCGGCGGAGGTGGCGGCGGCCGTATGCGGGAGAGAGAAAGAGCTCAGCTCGCATGGCCATCGCGGTGAGGTCGGCTGCGGCGGTGGCGAGGCACTCCCTGCGCCCTCCGCTGGCCGCGCCCGGCAGCATCCGCGGCGCCTCGCTCCTGCCGCCGCAGCGCGCGCGGCGAGCTCCTCCGCGACTGGAGGTGGCGGGCACCTTCCTCCGCTGTTCAGCGTGGCGCCGATGATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTGATCTCGAAGCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCAGAAAGATAACTTGGATAGATTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTGCAAATTGGTGGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGTTGCTTCGGTGCTCGCTTAATGTTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAATTGTAATGTCCCAGTCAGCGTTAAGTGCAGAATTGGTGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAGGTTGTTTCAAAATCACCAACTAGGCATTTCATTATTCATGCCCGGAAGGCATTGCTAAGTGGCCTCAGTCCTGCAGAAAATCGGAACGTTCCTCCTTTAAAATATGAATACTACTTTGCTTTATTGCGGGACTTCCCAGATGTGCAGTTTACTCTAAATGGAGGTATAACTACTATTGATCAAGTCACTGCATCCATAAGACAAGGTGCACATCGAGTTATGGTTGGCCGGGCTGCATATAATAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGGGATGCCGACAAGACGCTCTTCTCGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGATTCAATAATGGGCCAATATGGCCCCAGCAGACCAAACGTGAGACAACTTGTCAAGCCATTGTTAAATTTATTCCACTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGCTGACTCTACACTGCGTCATTGCAAGACACTTGAATCCTTCTTAGAGGAGACTCTTGACGCGATACCAAACTCTGTCCTTGACGCACCAATAGGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGATATGGATTCATTATTGCCGCCTAGATATTCATCACTGACCAACGGTAGCTGTGAAATTCCAGCACTTGTAACTGCATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACTGAAAAAAAAAGATAAGCCTGCAAGATTACTGTTATAATACAGACCCCTCCTGGGTTAGATTAGATACGCGGGAACACTATTGATTGTAAGTTGAAACAAACATCATGAAATGTGTATATATTCTTT              ]
[-] EMBL CB660123             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                  CATAAGACAAGGTGCACATCGAGTTATGGTTGGCCGGGCTGCATATAATAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGGGATGCCGACAAGACGCTCTTCTTGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGATTCAATAATGGGCCAATATGGCCCCAGCAGACCAAACGTGAGACAACTTGTCAAGCCATTGTTAAATTTATTCCACTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGCTGACTTTACACTGCGTCATTGCAAGACACTTGAATCCTTCTTAGAGGAGACTCTTGACGCGATACCAAACTCTGTCCTTGACGCACCAATAAGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGATATGGATTCATTATTGCCGCCTAGATATTCATCACTGACCAACGGTAGCTGTGAAATTCCAGCACTTGTAACTGCATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACTGAAAAAAAAAGATAAGCCTGCAAGATTACTGTTATAATACAGACCCCTCCTGGGTTAGAGGGGATACGCGGGAACACTATTGATTGTAAGTTGAAACAAACATCATGAAATGTGTATATATTCTTTTTTTTAAGGATATG]




>consensus_9819#0
GCGGCGGCAGCGGCGGCGGAGGTGGCGGCGGCCGTATGCGGGAGAGAGAAAGAGCTCAGC
TCGCATGGCCATCGCGGTGAGGTCGGCTGCGGCGGTGGCGAGGCACTCCCTGCGCCCTCC
GCTGGCCGCGCCCGGCAGCATCCGCGGCGCCTCGCTCCTGCCGCCGCAGCGCGCGCGGCG
AGCTCCTCCGCGACTGGAGGTGGCGGGCACCTTCCTCCGCTGTTCAGCGTGGCGCCGATG
ATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTGATCTCGAAGCACGCGTGG
CTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCAGAAAGATAACTTGGATAGA
TTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTGCAAATTGGTGGAAGTAATCTG
GATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGATGAGATCAACCTA
AACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGTTGCTTCGGTGCTCGCTTAATG
TTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAATTGTAATGTCCCA
GTCAGCGTTAAGTGCAGAATTGGTGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAA
TTTGTAGATAAGGTTGTTTCAAAATCACCAACTAGGCATTTCATTATTCATGCCCGGAAG
GCATTGCTAAGTGGCCTCAGTCCTGCAGAAAATCGGAACGTTCCTCCTTTAAAATATGAA
TACTACTTTGCTTTATTGCGGGACTTCCCAGATGTGCAGTTTACTCTAAATGGAGGTATA
ACTACTATTGATCAAGTCACTGCATCCATAAGACAAGGTGCACATCGAGTTATGGTTGGC
CGGGCTGCATATAATAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGGG
ATGCCGACAAGACGCTCTTCTCGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGAT
TCAATAATGGGCCAATATGGCCCCAGCAGACCAAACGTGAGACAACTTGTCAAGCCATTG
TTAAATTTATTCCACTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGCTGACTCTACA
CTGCGTCATTGCAAGACACTTGAATCCTTCTTAGAGGAGACTCTTGACGCGATACCAAAC
TCTGTCCTTGACGCACCAATAGGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGAT
ATGGATTCATTATTGCCGCCTAGATATTCATCACTGACCAACGGTAGCTGTGAAATTCCA
GCACTTGTAACTGCATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACTG
AAAAAAAAAGATAAGCCTGCAAGATTACTGTTATAATACAGACCCCTCCTGGGTTAGATT
AGATACGCGGGAACACTATTGATTGTAAGTTGAAACAAACATCATGAAATGTGTATATAT
TCTTTTTTTTAAGGATATG

consensusID : consensus_9819#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 913
fasta sequence

                              [TCCTCACCCGCAGCGGCCCGTACCCTTCCCAAGGAGAGGCGGCGGCAGCGGCGGCGGAGGTGGCGGCGGCCGTATGCGGGAGAGAGAAAGAGCTCAGCTCGCATGGCCATCGCGGTGAGGTCGGCT---------GCGGCGGTGGCGAGGCACTCCCTGCGCCCTCCGCTGGCCGCGCCCGGCAGCATCC-GCGGCGCCTCGCTCCTGCCGCCGCAGCGCGCTCGCGGCGTGGGCCCGTGTCGCGCCCGCGCTCGCGCGGCGAGCTCCTCCGCGACTGGAGGTGGCG-GGCACCTTCCTCCGCTGTTCAGCGTGGCGCCGATGATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTGATCTCGAAGCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCAGAAAGATAACTTGGATAGATTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTGCAAATTGGTGGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGTTGCTTCGGTGCTCGCTTAATGTTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAATTGTAATGTCCCAGTCAGCGTTAAGTGCAGAATTGGTGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAGGTTGTTTCAAAATCACCAACTAGGCATTTCATTATTCATGCCCGGAAGGCATTGCTAAGTGGCCTCAGTCCTGCAGAAAATCGGAACGTTCCTCCTTTAAAGTATGTCACGCCCATGATTTTCTTTGTGTAAAATATTATTCAAATTTGATGGATAAGTCTTCGTGGTC]

[+] EMBL AK108886             [TCCTCACCCGCAGCGGCCCGTACCCTTCCCAAGGAGAGGCGGCGGCAGCGGCGGCGGAGGTGGCGGCGGCCGTATGCGGGAGAGAGAAAGAGCTCAGCTCGCATGGCCATCGCGGTGAGGTCGGCT         GCGGCGGTGGCGAGGCACTCCCTGCGCCCTCCGCTGGCCGCGCCCGGCAGCATCC GCGGCGCCTCGCTCCTGCCGCCGCAGCGCGCTCGCGGCGTGGGCCCGTGTCGCGCCCGCGCTCGCGCGGCGAGCTCCTCCGCGACTGGAGGTGGCG GGCACCTTCCTCCGCTGTTCAGCGTGGCGCCGATGATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTGATCTCGAAGCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCAGAAAGATAACTTGGATAGATTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTGCAAATTGGTGGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGTTGCTTCGGTGCTCGCTTAATGTTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAATTGTAATGTCCCAGTCAGCGTTAAGTGCAGAATTGGTGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAGGTTGTTTCAAAATCACCAACTAGGCATTTCATTATTCATGCCCGGAAGGCATTGCTAAGTGGCCTCAGTCCTGCAGAAAATCGGAACGTTCCTCCTTTAAAGTATGTCACGCCCATGATTTTCTTTGTGTAAAATATTATTCAAATTTGATGGATAAGTCTTCGTGGTC]
[+] EMBL BU667158             [                                                                            CGGGAGAGAGAAAGAGCTCAGCTCGCATGGCCATCGCGGTGAGGTCGGCTGCGGCGGCGGCGGCGGTGGCGAGGCACTCCCTGCGCCCTCCGCTGGCAGCGCCCGGCAGCATCCTGCGGCGCCTCGCTCCTGCCGCCGCAGCGCGCTCGCGGTGTGGGCCCGTGTCGCGCCCGCGCTCGCGCGGCGAGCTCCTCCGCGACTGGAGGTGGCGTGGCACCTTCCTCCGCTGTTCAGCGTGGCGCCGATGATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTGATCTCGAAGCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCAGAAAGATAACTTGGATAGATTTTTAGCGTTTCCTGCTGAACAG ATCCTATTGTGTTGCAAATTGGTGGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGATGAGATCAACCTAAACTGTGGCTG                                                                                                                                                                                                                                                                                                                                                              ]




>consensus_9819#1
TCCTCACCCGCAGCGGCCCGTACCCTTCCCAAGGAGAGGCGGCGGCAGCGGCGGCGGAGG
TGGCGGCGGCCGTATGCGGGAGAGAGAAAGAGCTCAGCTCGCATGGCCATCGCGGTGAGG
TCGGCTGCGGCGGTGGCGAGGCACTCCCTGCGCCCTCCGCTGGCCGCGCCCGGCAGCATC
CGCGGCGCCTCGCTCCTGCCGCCGCAGCGCGCTCGCGGCGTGGGCCCGTGTCGCGCCCGC
GCTCGCGCGGCGAGCTCCTCCGCGACTGGAGGTGGCGGGCACCTTCCTCCGCTGTTCAGC
GTGGCGCCGATGATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTGATCTCG
AAGCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCAGAAAGAT
AACTTGGATAGATTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTGCAAATTGGT
GGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGAT
GAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGTTGCTTCGGT
GCTCGCTTAATGTTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAAT
TGTAATGTCCCAGTCAGCGTTAAGTGCAGAATTGGTGTTGATGATCGTGACTCCTACGAA
GAACTTTGTGAATTTGTAGATAAGGTTGTTTCAAAATCACCAACTAGGCATTTCATTATT
CATGCCCGGAAGGCATTGCTAAGTGGCCTCAGTCCTGCAGAAAATCGGAACGTTCCTCCT
TTAAAGTATGTCACGCCCATGATTTTCTTTGTGTAAAATATTATTCAAATTTGATGGATA
AGTCTTCGTGGTC

consensusID : consensus_9819#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 760
fasta sequence

                              [ATACTACTTTGCTTTATTGCGGGACTTCCCAGATGTGCAGTTTACTCTAAATGGAGGTATAACTACTATTGATCAAGTCACTGCATCCATAAGACAAGGTGCACATCGAGTTATGGTTGGCCGGGCTGCATATAATAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGGGATGCCGACAAGACGCTTTTTTCGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGATTCAATAATGGGCCAATATGGCCCCAGCAGACCAAACGTGAGACAACTTGTCAAGCCATTGTTAAATTTATTCCACTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGCTGACTTTACACTGCGTCATTGCAAGACACTTGAATCCTTTTTAGAGGAGACTCTTGACGCGATACCAAACTCTGTCCTTGACGCACCAATAGGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGATATGGATTCATTATTGCCGCCTAGATATTCATCACTGACCAACGGTAGCTGTGAAATTCCAGCACTTGTAACTGCATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACTGAAAAAAAAAGATAAGCCTGCAAGATTACTGTTATAATACAGACCCCTCCTGGGTTAGATTAGATACGCGGGAACACTATTGATTGTAAGTTGAAACAAACATCATGAAATGTGAAGGATATTCTTTGGGAGGAAGGATAAAAAAAAAAAACATAAAAGA]

[-] EMBL CB668607             [ATACTACTTTGCTTTATTGCGGGACTTCCCAGATGTGCAGTTTACTCTAAATGGAGGTATAACTACTATTGATCAAGTCACTGCATCCATAAGACAAGGTGCACATCGAGTTATGGTTGGCCGGGCTGCATATAATAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGGGATGCCGACAAGACGCTTTTTTCGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGATTCAATAATGGGCCAATATGGCCCCAGCAGACCAAACGTGAGACAACTTGTCAAGCCATTGTTAAATTTATTCCACTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGCTGACTTTACACTGCGTCATTGCAAGACACTTGAATCCTTTTTAGAGGAGACTCTTGACGCGATACCAAACTCTGTCCTTGACGCACCAATAGGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGATATGGATTCATTATTGCCGCCTAGATATTCATCACTGACCAACGGTAGCTGTGAAATTCCAGCACTTGTAACTGCATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACTGAAAAAAAAAGATAAGCCTGCAAGATTACTGTTATAATACAGACCCCTCCTGGGTTAGATTAGATACGCGGGAACACTATTGATTGTAAGTTGAAACAAACATCATGAAATGTGAAGGATATTCTTTGGGAGGAAGGATAAAAAAAAAAAACATAAAAGA]




>consensus_9819#2
ATACTACTTTGCTTTATTGCGGGACTTCCCAGATGTGCAGTTTACTCTAAATGGAGGTAT
AACTACTATTGATCAAGTCACTGCATCCATAAGACAAGGTGCACATCGAGTTATGGTTGG
CCGGGCTGCATATAATAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGG
GATGCCGACAAGACGCTTTTTTCGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGA
TTCAATAATGGGCCAATATGGCCCCAGCAGACCAAACGTGAGACAACTTGTCAAGCCATT
GTTAAATTTATTCCACTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGCTGACTTTAC
ACTGCGTCATTGCAAGACACTTGAATCCTTTTTAGAGGAGACTCTTGACGCGATACCAAA
CTCTGTCCTTGACGCACCAATAGGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGA
TATGGATTCATTATTGCCGCCTAGATATTCATCACTGACCAACGGTAGCTGTGAAATTCC
AGCACTTGTAACTGCATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACT
GAAAAAAAAAGATAAGCCTGCAAGATTACTGTTATAATACAGACCCCTCCTGGGTTAGAT
TAGATACGCGGGAACACTATTGATTGTAAGTTGAAACAAACATCATGAAATGTGAAGGAT
ATTCTTTGGGAGGAAGGATAAAAAAAAAAAACATAAAAGA

consensusID : consensus_9819#3
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 633
fasta sequence

                              [GCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCCCAAAGATAACTTGATGCGATGAGCTTTCTTGGCGGCACTGGCAGCTTAATATGGGGGAACCACTTCAACTCAACTTGGCACCATCAGTGCTGGCTTGTTTTGTATATTTGTCACTATGTCTTCAATCATTGTTTCTTAAATTCTACTTTTGGTGCAATGAAGGCAACTGTGAAACGTGTCTACGACATATGGTTCACATTATGTGCACATGACACTGCTACACAGAATTGATAAATCTTATTCTTTTGTCGTCACAATATGCAGGATAGATTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTGCAAATTGGTGGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGTTGCTTCGGTGCTCGCTTAATGTTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAATTGTAATGTCCCAGTCAGCGTTGAGTGCAGAATTGGTGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAG]

[+] EMBL CB660122             [GCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCCCAAAGATAACTTGATGCGATGAGCTTTCTTGGCGGCACTGGCAGCTTAATATGGGGGAACCACTTCAACTCAACTTGGCACCATCAGTGCTGGCTTGTTTTGTATATTTGTCACTATGTCTTCAATCATTGTTTCTTAAATTCTACTTTTGGTGCAATGAAGGCAACTGTGAAACGTGTCTACGACATATGGTTCACATTATGTGCACATGACACTGCTACACAGAATTGATAAATCTTATTCTTTTGTCGTCACAATATGCAGGATAGATTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTGCAAATTGGTGGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGTTGCTTCGGTGCTCGCTTAATGTTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATTGCTGCCAATTGTAATGTCCCAGTCAGCGTTGAGTGCAGAATTGGTGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAG]




>consensus_9819#3
GCACGCGTGGCTCTACACGGAGATGGTGGTCGCGGAGACCATCGTGCATCCCAAAGATAA
CTTGATGCGATGAGCTTTCTTGGCGGCACTGGCAGCTTAATATGGGGGAACCACTTCAAC
TCAACTTGGCACCATCAGTGCTGGCTTGTTTTGTATATTTGTCACTATGTCTTCAATCAT
TGTTTCTTAAATTCTACTTTTGGTGCAATGAAGGCAACTGTGAAACGTGTCTACGACATA
TGGTTCACATTATGTGCACATGACACTGCTACACAGAATTGATAAATCTTATTCTTTTGT
CGTCACAATATGCAGGATAGATTTTTAGCGTTTCCTGCTGAACAGCATCCTATTGTGTTG
CAAATTGGTGGAAGTAATCTGGATAACTTAGCGAAGGCAACTGAACTGGCAAATGCTTAT
TCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGGTCATGGT
TGCTTCGGTGCTCGCTTAATGTTTGATCCAGAGTTTGTAGGGGATGCTATGTCAGCTATT
GCTGCCAATTGTAATGTCCCAGTCAGCGTTGAGTGCAGAATTGGTGTTGATGATCGTGAC
TCCTACGAAGAACTTTGTGAATTTGTAGATAAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9819#1      TCCTCACCCGCAGCGGCCCGTACCCTTCCCAAGGAGAGGCGGCGGCAGCGGCGGCGGAGG 60
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      --------------------------------------GCGGCGGCAGCGGCGGCGGAGG 22
consensus_9819#2      ------------------------------------------------ATACTACTTTGC 12
                                                                                  

consensus_9819#1      TGGCGGCGGCCGTATGCGGGAGAGAGAAAGAGCTCAGCTCGCATGGCCAT-CGCGGTGAG 119
consensus_9819#3      ------------------------------------GCACGCGTGGCTCTACACGGAGAT 24
consensus_9819#0      TGGCGGCGGCCGTATGCGGGAGAGAGAAAGAGCTCAGCTCGCATGGCCAT-CGCGGTGAG 81
consensus_9819#2      TTTATTGCGGGACTTCCCAGATGTGCAGTTTACTCTAAATGGAGGTATAACTACTATTGA 72
                                                              *   *        *      

consensus_9819#1      GTCGGCTGCGGCGGTGGCGAGGCACTCCCTGCGCCCTCCGCTGGCCGCGCCCGGCAGCAT 179
consensus_9819#3      GGTGGTCGCGGAGACCATCGTGCATCCCAAAGATA----ACTTGATGCGATGAGCTTTCT 80
consensus_9819#0      GTCGGCTGCGGCGGTGGCGAGGCACTCCCTGCGCCCTCCGCTGGCCGCGCCCGGCAGCAT 141
consensus_9819#2      TCAAGTCACTGCATCCATAAGACAAGGTGCACATCGAGTTATGGTTG-GCCGGGCTGCAT 131
                          *   * *           **                 * *  * *    **    *

consensus_9819#1      -CCGCGGCGCCTCGCTCCTGCCGCCGCA---GCGCGCTCGCGGCG-TGGGCCCGTGTCGC 234
consensus_9819#3      -TGGCGGCACTGGCAGCTTAATATGGGG---GAACCACTTCAACT-CAACTTGGCACCAT 135
consensus_9819#0      -CCGCGGCGCCTCGCTCCTGCCGCCGCA---GCGC------------------------- 172
consensus_9819#2      ATAATAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGGGATGCCGACAA 191
                               *      * *      *     *  *                         

consensus_9819#1      GCCCGCGCTCGCGCGGCGAGCTCCTCCGCGACTGGAGGTGGCGGGCACCTTCCTCCGCTG 294
consensus_9819#3      --CAGTGCTGGCTTGTTTTGTATATTTGTCACTATGTCTT-CAATCATTGTTTCTTAAAT 192
consensus_9819#0      ----------GCGCGGCGAGCTCCTCCGCGACTGGAGGTGGCGGGCACCTTCCTCCGCTG 222
consensus_9819#2      GACGCTTTTTTCGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGATTCAATAATGG 251
                                 *       *    *      **                 *         

consensus_9819#1      TTCAGCGTGGCGCCGATGATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTG 354
consensus_9819#3      TCTACTTTTGGTGCAATGAAGGCAACTGTGAAACGTGTCTACGACATA-TGGTTCACATT 251
consensus_9819#0      TTCAGCGTGGCGCCGATGATGGACTGGACGGACAACCACTACCGGACGCTCGCGCGGCTG 282
consensus_9819#2      GCCAATATGGCCCCAGC-AGACCAAACGTGAGACAACTTGTCAAGCCA-TTGTTAAATTT 309
                         *   * *   *    *          *           *       * *      * 

consensus_9819#1      ATCTCGA--AGCACGCGTGGCT-CTACACGGAGATGGTGGTCGCGGAGACCATCGTGCAT 411
consensus_9819#3      ATGT------GCACATGACACTGCTACACAGAATTGATAAAT-CTTATTCTTTTGT-CGT 303
consensus_9819#0      ATCTCGA--AGCACGCGTGGCT-CTACACGGAGATGGTGGTCGCGGAGACCATCGTGCAT 339
consensus_9819#2      ATTCCACTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGC--TGACTTTACACTGCGT 367
                      **        * **  *    *        **   *          *        * * *

consensus_9819#1      CAGAAAGATAACTTGGATAGATTTTTAGCGTTTCCTGCTGA-ACAGCATCCTATTGTGTT 470
consensus_9819#3      CACAA---TATGCAGGATAGATTTTTAGCGTTTCCTGCTGA-ACAGCATCCTATTGTGTT 359
consensus_9819#0      CAGAAAGATAACTTGGATAGATTTTTAGCGTTTCCTGCTGA-ACAGCATCCTATTGTGTT 398
consensus_9819#2      CATTGCAAGACACTTGAATCCTTTTTAGAGGAGACTCTTGACGCGATACCAAACTCTGTC 427
                      **       *     **    ******* *    **  ***  *   * *  * * *** 

consensus_9819#1      GCAAATTGGTGGA--AGTAATCTGG-ATAACTTAGCGAAGGCAACTGAACTGGCAAATGC 527
consensus_9819#3      GCAAATTGGTGGA--AGTAATCTGG-ATAACTTAGCGAAGGCAACTGAACTGGCAAATGC 416
consensus_9819#0      GCAAATTGGTGGA--AGTAATCTGG-ATAACTTAGCGAAGGCAACTGAACTGGCAAATGC 455
consensus_9819#2      CTTGACGCACCAATAGGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGATATGGAT 487
                          *       *   ****   ** ***  *    ** **  * *   ***  *     

consensus_9819#1      TTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGG--T 585
consensus_9819#3      TTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGG--T 474
consensus_9819#0      TTATTCGTACGATGAGATCAACCTAAACTGTGGCTGCCCCAGTGGCAAAGTTGCTGG--T 513
consensus_9819#2      TCATTATTGCCGCCTAGATATTCATCACTG-ACCAACGGTAGCTGTGAAATTCCAGCACT 546
                      * ***  * *         *  *   ****   *  *   **  *  ** ** * *   *

consensus_9819#1      CATGGTTGCTTCGG--TGCTCGCTTAATGTTTGAT-------CCAGAGTTTGTAGGGGAT 636
consensus_9819#3      CATGGTTGCTTCGG--TGCTCGCTTAATGTTTGAT-------CCAGAGTTTGTAGGGGAT 525
consensus_9819#0      CATGGTTGCTTCGG--TGCTCGCTTAATGTTTGAT-------CCAGAGTTTGTAGGGGAT 564
consensus_9819#2      TGTAACTGCATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACTGAAAAA 606
                        *   *** **    **  * *   ** **   *       * * * ***   *   * 

consensus_9819#1      GCTATGTCAGCT------ATTGCTGCCAATTGTAATGTCCCAGTCAGCGTT-AAGTGCAG 689
consensus_9819#3      GCTATGTCAGCT------ATTGCTGCCAATTGTAATGTCCCAGTCAGCGTT-GAGTGCAG 578
consensus_9819#0      GCTATGTCAGCT------ATTGCTGCCAATTGTAATGTCCCAGTCAGCGTT-AAGTGCAG 617
consensus_9819#2      AAAAGATAAGCCTGCAAGATTACTGTTA-TAATACAGACCCCTCCTGGGTTAGATTAGAT 665
                         *  * ***       *** ***  * *  **  * ***   * * ***  * *  * 

consensus_9819#1      AATTGG---TGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAGGT 746
consensus_9819#3      AATTGG---TGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAG-- 633
consensus_9819#0      AATTGG---TGTTGATGATCGTGACTCCTACGAAGAACTTTGTGAATTTGTAGATAAGGT 674
consensus_9819#2      ACGCGGGAACACTATTGATTGTAAGTTGAAACAAACATCATG-AAATGTGAAGGATATTC 724
                      *   **      *  **** ** * *   *  **  *   **  *** ** **   *   

consensus_9819#1      TGTTTCAAAATCACCAACTAGGCATTTCATTATTCATGCCCGGAAGGCATTGCTAAGTGG 806
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      TGTTTCAAAATCACCAACTAGGCATTTCATTATTCATGCCCGGAAGGCATTGCTAAGTGG 734
consensus_9819#2      TTTGGGAGGAAGGATAAAAAAAAAAAACATAAAAGA------------------------ 760
                                                                                  

consensus_9819#1      CCTCAGTCCTGCAGAAAATCGGAACGTTCCTCCTTTAAAGTATGTCACGCCCATGATTTT 866
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      CCTCAGTCCTGCAGAAAATCGGAACGTTCCTCCTTTAAAATATGAATACTACTTTGCTTT 794
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      CTTTGTGTAAAATATTATTCAAATTTGATGGATAAGTCTTCGTGGTC------------- 913
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      ATTGCGGGACTTCCCAGATGTGCAGTTTACTCTAAATGGAGGTATAACTACTATTGATCA 854
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      AGTCACTGCATCCATAAGACAAGGTGCACATCGAGTTATGGTTGGCCGGGCTGCATATAA 914
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      TAATCCATGGAACATGCTGGGGCATGTGGACAGTGAAGTCTATGGGATGCCGACAAGACG 974
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      CTCTTCTCGTCGCCAGATCCTTGAGAGCTACCAGGTTTATGGTGATTCAATAATGGGCCA 1034
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      ATATGGCCCCAGCAGACCAAACGTGAGACAACTTGTCAAGCCATTGTTAAATTTATTCCA 1094
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      CTCGGAACCTGGCAATGGCCTTTGGAAACGCAAGGCTGACTCTACACTGCGTCATTGCAA 1154
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      GACACTTGAATCCTTCTTAGAGGAGACTCTTGACGCGATACCAAACTCTGTCCTTGACGC 1214
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      ACCAATAGGTAAGGAGGCATACATCGAGGAGGGACATTTTGCTGATATGGATTCATTATT 1274
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      GCCGCCTAGATATTCATCACTGACCAACGGTAGCTGTGAAATTCCAGCACTTGTAACTGC 1334
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      ATCCACCTGACCACCATATTTTCCGTGGAGATGCTAAAATTTACTGAAAAAAAAAGATAA 1394
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      GCCTGCAAGATTACTGTTATAATACAGACCCCTCCTGGGTTAGATTAGATACGCGGGAAC 1454
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      ------------------------------------------------------------
consensus_9819#3      ------------------------------------------------------------
consensus_9819#0      ACTATTGATTGTAAGTTGAAACAAACATCATGAAATGTGTATATATTCTTTTTTTTAAGG 1514
consensus_9819#2      ------------------------------------------------------------
                                                                                  

consensus_9819#1      -----
consensus_9819#3      -----
consensus_9819#0      ATATG 1519
consensus_9819#2      -----