These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9820#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 991 fasta sequence [GGGAATAGCTTCGGCGCGCCGGGGCCGGTGCTGCTGGAGCTGTTCTGCTCGCAG-GGGTGCGGGGCGTCGCCGGAGGCGGACGCGGTGGCGGCGCGGATGGTGCACGAGGACCAGCAGCGGGCGGCGGCGGGCGAGGGAGGCGGCGGGGAGCGCGGCGTGGTGGTGCTGGGCTTCCACGTCGACTACTGGGACTACCGCGGGTGGAAGGACCCGTTCGCGTCCAGCGCGTGGACGGTGCGGCAGAAGGCGTACGTGGAGGCGCTCCGGCTCGACACTCTGTTCACGCCGCAGGCCGTCGTGCAGGGCCGCGCCCACTGCGTCGGCACCGAGCAGGACGCCCTCGCCCAGGCCGTCCGCGACACGCCCCGCTACCCCGCCCCCGCCATGAAGGTGACGTTCCAGCGGCCGAACCCGAGCACGCTGCAGGCGTCGTTCACGGGGACGCTGCGGAGCCGGATGGAGGGCGGCGGGAG-CGTGCTGGTGGCGCTGTACGAGAGCGGGCTGGTCACGGACTGCGGGCGCGGCGAGAACAAGGGGAAGTCGCTGCTCAACGACCAC-GTGGTGCGGCGGCTGGAGAAGGTGGCCGCCGTGCGCGAC-GGCGCGTCGGCGAAGAAGTCCGTGTCCGGGTCCGTGCAGTTCCCGCTCTGGGACGGCTTCCGCGCCTCCCGCTGCGGCCTCGTCCTCTTCGTCCAGAAC-GCCGCGCTGCAGGTGCTCGGCGTCCAGCACTTCGACCTGCCCGACAACGTGTGACTACTCGCGGTCGGTCGGTCGAGGCTTGCGCCTGCGTGTGTAGACGTGTGCCGTGTAATGTACTACTAGTAAATATTCTTTGTAGAGTACACGTTTGATTATTGATCGACGCGTTTGTATTGTTGTTGATTTGTTGGGGGTACGAGACTAGACGAGAGTGGGGAG-AT---GGGTAATTGGAGACATTATT-ATTCAGACATTGCAGCAGCCTTGCAGCCTCGT-CCGAT-T-TGCCTCGGGCCATATT] [+] EMBL BU673490 [GGGAATAGCTTCGGCTCGCCGGGGCCGGTGCTGCTGGAGCTGTTCTGCTCGCAG GGGTGCGGGGCGTCGCCGGAGGCGGACGCGGTGGCGGCGCGGAT GTGCACGAGGACCAGCAGCGGGCGGCGGCGGGCGAGGGAGGCGGCGGGGAGCGCGGCGTGGTGGTGCTGGGCTTCCACGTCGACTACTGGGACTACCGCGGGTGGAAGGACCCGTTCGCGTCCAGCGCGTGGACGGTGCGGCAGAAGGCGTACGTGGAGGCGCTCCGGCTCGACACTCTGTTCACGCCGCAGGCCGTCGTGCAGGGCCGCGCCCACTGCGTCGGCACCGAGCAGGACGCCCTCGCCCAGGCCGTCCGCGACACGCCCCGCTACCCCGCCCCCGCCATGAAGGTGACGTTCCAGCGGCCGAACCCGAGCACGCTGCAGGCGTCGTTCACGGGGACGCTGCGGAGCCGGATGGAGGGCGGCGGGAGCCGTGCTGGTGGCGCTGTACGAGAGCGGGCTGGTCACGGACTGCGGGCGCGGCGAGAACAAGGGGAAGTCGCTGCTCAACGACCAC GTGGTGCGGCGGCTGGAGAAGGTGGCCGCCGTGCGCGAC GGCGCGTCGGCGAAGAAGTCCGTGTCCGGGTCCGTGCAGTTCGCGCTCTGGGACGGCTTCCGCGCCTCCCGCTGCGGCCTC ] [+] EMBL BU672931 [ GGAATAGCTTGCGCGCGCCGGGGCCGGTGCTGCTGGAGCTGTTCTGCTCGCAGTGGGTGCGGGGCGTCGCCGGAGGCGGACGCGGTGGCGGCGCGGATGGTGCACGAGGACCAGCAGCGGGCGGCGGCGGGCGAGGGAGGCGGCGGGGAGCGCGGCGTGGTGGTGCTGGGCTTCCACGTCGACTACTGGGACTACCGCGGGTGGAAGGACCCGTTCGCGTCCAGCGCGTGGACGGTGCGGCAGAAGGCGTACGTGGAGGCGCTCCGGCTCGACACTCTGTTCACGCCGCAGGCCGTCGTGCAGGGCCGCGCCCACTGCGTCGGCACCGAGCAGGACGCCCTCGCCCAGGCCGTCCGCGACACGCCCCGCTACCCCGCCCCCGCCATGAAGGTGACGTTCCAGCGGCCGAACCCGAGCACGCTGCAGGCGTCGTTCACGGGGACGCTGCGGAGCCGGATGGAGGGCGGCGGGAGCCGTGCTGGTGGCGCTGTACGAGAGCGGGCTGGTCACGGACTGCGGGCGCGGCGAGAACAAGGGGAAGTCGCTGCTCAACGACCAC GTGGTGCGGCGGCTGGAGAAGGTGGCCGCCGTGCGCGACGGGCGCGTCGGCGAAGAAGTCCGTGTCCGGGGTCGTGCAGTTCCCGCTCTGGGACGGCTTCCGCGCCTCCCGCTGCGGACTCGTCCTCTTCGTCCAGAACGGCCGGGCTG AGGTG ] [+] EMBL CB964772 [ GAAT TCTGCGGCGCGCCGGGGCCGGTGCTGCTGGAGCTGTTCTGCTCGCAGTGGGTGCGGGGCGTCGCCGGAGGCGGACGCGGTGGCGGCGCGGATGGTGCACGAGGACCAGCAGCGGGCGGCGGCGGGCGAGGGAGGCGGCGGGGAGCGCGGCGTGGTGGTGCTGGGCTTCCACGTCGACTACTGGGACTACCGCGGGTGGAAGGACCCGTTCGCGTCCAGCGCGTGGACGGTGCGGCAGAAGGCGTACGTGGAGGCGCTCCGGCTCGACACTCTGTTCACGCCGCAGGCCGTCGTGCAGGGCCGCGCCCACTGCGTCGGCACCGAGCAGGACGCCCTCGCCCAGGCCGTCCGCGACACGCCCCGCTACCCCGCCCCCGCCATGAAGGTGACGTTCCAGCGGCCGAACCCGAGCACGCTGCAGGCGTCGTTCACGGGGACGCTGCGGAGCCGGATGGAGGGCGGCGGGAG CGTGCTGGTGGCGCTGTACGAGAGCGGGCTGGTCACGGACTGCGGGCGCGGCGAGAACAAGGGGAAGTCGCTGCTCAACGACCACNGTGGTGCGGCGGCTGGAGAAGGTGGCCGCCGTGCGCGAC GGCGCGTCGGCGAAGAAGTCCGTGTCCGGGTCCGTGCAGTTCCCGCTCTGGGACGGCTTCCGCGCCTCCCGCTGCGGCCTCGTCCTCTTCGTCCAGAAC GCCGCGCTGCAGGTGCTCGGCGTCCAGCACTTCGACCTGGCCGACAACGTGTGACTACTCGCGGTCGGTCGGTCGAGGGTTGCGCCTGCGTTTGTAGACGTGTTGCGTG ] [+] EMBL CB967386 [ GAATAGCTTCGGCGC CCGGGG CGGTGCTGCTGGAGCTG CCTGCTCGCAG GGGTGCGGGGCGTCGCCGGAGGCGGACGCGGTGGCGGCGCGGATTGTGC CGAGGACCAGCAGCGGGCGGCGGCGGGCGAGGGAGGCGGCGGGGAGCGCGGCGTGGTGGTGCTGGGCTTCCACGTCGACTACTGGGACTACCGCGGGTGGAAGGACCCGTTCGCGTNCAGCGCGTGGACGGTGCGGCAGAAGGCGTACGTGGAGGCGCTCCGGCTCGACACTCTGTTCACGCCGCAGGCCGTCGTGCAGGGCCGCGCCCACTGCGTCGGCACCGAGCAGGACGCCCTCGCCCAGGCCGTCCGCGACACGCCCCGCTACCCCGCCCCCGCCATGAAGGTGACGTTCCAGCGGCCGAACCCGAGCACGCTGCAGGCGTCGTTCACGGGGACGCTGCGGAGCCGGATGGAGGGCGGCGGGAG CGTGCTGGTGGCGCTGTACGAGAGCGGGCTGGTCACGGACTGCGGGCGCGGCGAGAACCAGGGGAAGTCGCTGCTCAACGACCAC GTGGTGCGGCGGCTGGAGAAGGTGGCCGCCGTGCGCGAC GGCGCGTCGGCGAAGAAGTCCGTGGTCGGGTCCGTGCAGTTCCCGCTCTGGGACTGCTTTCGCGCCTCCCGCTGCGGGCTCGTCCTCTTCGTCCAGAAC GCCGCGCTTCAGG ] [-] EMBL BU673850 [ CCGCTACCCCGCCCCCGCCATGAAGTTGACGTTCCAGCGTCCGAACCCGAGCACGCTGCAGGCGTCGTTCACGGGGACTCTGCGGAGCCGGATGGAGGTCGTCGGGAG CGTGCTGGTGGCGCTGTACGAGAGCGGGCTGGTCACGGACTGCGGGCGCGGCGAGTACAAGGGGAAGTCGCTGCTCTACGACCAC GTGGTGCGTCGGCTGGAGAAGGTGGCCGCCGTGCGCGAC GGCGCGTCGGCGAAGAAGTCCGTGTCCGGGTCCGTGCAGTTCCCGCTCTGGGACGGCTTCCGCGCCTCCCGCTGCGGCCTCGTCCTCTTCGTCCAGAAC GCCGCGCTGCAGGTGCTCGGCGTCCAGCACTTCGACCTGCCCGACAACGTGTGACTACTCGCGGTCGGTCGGTCGAGGCTTGCGCCTGCGTGTGTAGACGTGTGCCGTGTAATGTACTACTAGTAAATATTCTTTGTAGAGTACACGTTTGATTATTGATCGACGCGTTTGTATTGTTGTTGATTTGTTGGGGGTACGAGACTAGACGAGAGTGGGGAG AT GGGTAATTGGAGACATTATTAATTCAGACATTGCAGCAGCCTTGCAGCCTCGT CCGATGTCTGCCTCGGGCCATATT] [-] EMBL BU673853 [ TCGTTCACGGGGACGCTGCGGAGCCGGATGGAGGGCGGCGGGAG CGTGCTGGTGGCGCTGTACGAGAGCGGGCTGGTCACGGACTGCGGGCGCGGCGAGAACAAGGGGAAGTCGCTGCTCAACGACCAC GTGGTGCGGCGGCTGGAGAAGGTGTCCGCCGTGCGCGAC GGCGCGTCGGCGAAGAAGTCCGTGTCCGGGTCCGTGCAGTTCCCGCTCTGGGACGGCTTCCGCGCCTCCCGCTGCGGCCTCGTCCTCTTCGTCCAGTAC GCCGCGCTGCAGGTGCTCGGCGTCCAGCACTTCGACCTGCCCGACCACGTGTGACTACTCGCGGTCGGTCGGTCGAGGCTTGCGCCTGCGTGTGTAGACGTGTGCCGTGTAATGTACTACTAGTAAATATTCTTTGTAGAGTACACGTTTGATTATTGATCGACGCGTTTGTATTGTTGTTGATTTGTTGGGGGTACGAGACTAGACGAGAGTGGGGAGCATAGCGGGTAATTGGAGACATTATT ATTCAGACATTGCAGCAGCCTTGCAGCCTCGTGCCGAT T AGCCTCGGG ] clustalw multiple alignements is not computed in this case |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||