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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9822#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1534 fasta sequence
[GATCGGGCCAAATCCTCCTCCCCTTCGTCGCCGCTGCTGTAGGCTACCCAAATCTCGCCGCTGCTGTTGGCTACTCAAATCTCGCCGCTGCTGTAGGCTACCCAATCGCTGCACCATGTGTGGTGACTGCTGCGGCCGCGGTGCCGGGGGAGCCGCCGAGGCGGGGGCGGCCGGCGCCGGCGGCGGGAGGAAGCGGGGGTGCGCGGGGACGGCGCTCGCCCTCGTGGCGCTGGCGGCCGCCGCGGCGGTCGCCGTCCTGGAGGGCACCGCCGGCGGTGTCTCCTACGTGGGCGACGGGTGGCTCCACGAGTGCGCCAAGTGGGACGCCGACGGACGGCGGCTGCTCGTGTCCAACTTCTTCGGCGCCGGCGTGTCCGAGCTCCGCGCCGAGGCGAAAGGGAAGGAGAAGGAGGAGGAGCGCGTGGTCCTGGCGGATCCCGACGTCGCCGGGAGGGTCGCGCTGGGTCTCACCGTCGACGCGCCGAGGGGGCGCCTGCTCATCGTCTACGCCGACCGGTTGCCGCGGTTCGCGTACTCCGCCGTCGCCGCGTACGACCTCGCCTCGTGGCGCCGCCTCTTCCTCACCCGCCTCGACGGACCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAAGGTGAAGGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTCCCCGACGAGGCTGGTCGCCGCCGGCCTGGTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGTCGTCACCGGCCGGTACGTCGGCCCGGCTCACCGGATCGGCTCGTCGGCGACGGTGAAGGATGGCGACGTGTACATCAACCACATCATCGGGTTCGGGCTCGGCAAGAAGACGCATGTCATCTCCAAGGCGGCGTTCGCGCCTTTGTAGGCGCTGGCGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTTCTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTTATGCCTGAGGATTATGCATCTATGCATATGCTCGTCCAACGTCCTTTTTTGCAATCCATTGCCAGTTTGTTTAGAAATTAGAACAATCTCTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCGAAGAGTGCACACTTGATTGTCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGTTTCAATTGTAGGAGAGTAAATTTCGCAAGAATGCAATTATTTTGTCAACAGGTATTTTGATTGGTGACTTGTATAACAGTCCAAGTTGATTCCATTTGCCAGT]
[+] EMBL CB675589 [GATCGGGCCAAATCCTCCTCCCCTTCGTCGCCGCTGCTGTAGGCTACCCAAATCTCGCCGCTGCTGTTGGCTACTCAAATCTCGCCGCTGCTGTAGGCTACCCAATCGCTGCACCATGTGTGGTGACTGCTGCGGCCGCGGTGCCGGGGGAGCCGCCGAGGCGGGGGCGGCCGGCGCCGGCGGCGGGAGGAAGCGGGGGTGCGCGGGGACGGCGCTCGCCCTCGTGGCGCTGGCGGCCGCCGCGGCGGTCGCCGTCCTGGAGGGCACCGCCGGCGGTGTCTCCTACGTGGGCGACGGGTGGCTCCACGAGTGCGCCAAGTGGGACGCCGACGGACGGCGGCTGCTCGTGTCCAACTTCTTCGGCGCCGGCGTGTCCGAGCTCCGCGCCGAGGCGAAAGGGAAGGAGAAGGAGGAGGAGCGCGTGGTCCTGGCGGATCCCGACGTCGCCGGGAGGGTCGCGCTGGGTCTCACCGTCGACGCGCCGAGGGGGCGCCTGCTCATCGTCTACGCCGACCGGTTGCCGCGGTTCGCGTACTCCGCCGTCGCCGCGTACGACCTCGCCTCGTGGCGCCGCCTCTTCCTCACCCGCCTCGACGGACCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATC ]
[+] EMBL AK110558 [ GACTGCTGCGGCCGCGGTGCCGGGGGAGCCGCCGAGGCGGGGGCGGCCGGCGCCGGCGGCGGGAGGAAGCGGGGGTGCGCGGGGACGGCGCTCGCCCTCGTGGCGCTGGCGGCCGCCGCGGCGGTCGCCGTCCTGGAGGGCACCGCCGGCGGTGTCTCCTACGTGGGCGACGGGTGGCTCCACGAGTGCGCCAAGTGGGACGCCGACGGACGGCGGCTGCTCGTGTCCAACTTCTTCGGCGCCGGCGTGTCCGAGCTCCGCGCCGAGGCGAAAGGGAAGGAGAAGGAGGAGGAGCGCGTGGTCCTGGCGGATCCCGACGTCGCCGGGAGGGTCGCGCTGGGTCTCACCGTCGACGCGCCGAGGGGGCGCCTGCTCATCGTCTACGCCGACCGGTTGCCGCGGTTCGCGTACTCCGCCGTCGCCGCGTACGACCTCGCCTCGTGGCGCCGCCTCTTCCTCACCCGCCTCGACGGACCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAAGGTGAAGGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTCCCCGACGAGGCTGGTCGCCGCCGGCCTGGTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGTCGTCACCGGCCGGTACGTCGGCCCGGCTCACCGGATCGGCTCGTCGGCGACGGTGAAGGATGGCGACGTGTACATCAACCACATCATCGGGTTCGGGCTCGGCAAGAAGACGCATGTCATCTCCAAGGCGGCGTTCGCGCCTTTGTAGGCGCTGGCGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTTCTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTTATGCCTGAGGATTATGCATCTATGCATATGCTCGTCCAACGTCCTTTTTTGCAATCCATTGCCAGTTTGTTTAGAAATTAGAACAATCTCTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCGAAGAGTGCACACTTGATTGTCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGTTTCAATTGTAGGAGAGTAAATTTCGCAAGAATGCAATTATTTTGTCAACAGGTATTTTGATTGGTGACTTGTATAACAGTCCAAGTTGATTCCATTTGCCAGT]
[-] EMBL CB675590 [ TACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAAGGTGAAGGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTCCCCGACGAGGCTGGTCGCCGCCGGCCTGGTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGTCGTCACCGGCCGGTACGTCGGCCCGGCTCACCGGATCGGCTCGTCGGCGACGGTGAAGGATGGCGACGTGTACATCAACCACATCATCGGGTTCGGGCTCGGCAAGAAGACGCATGTCATCTCCAAGGCGGCGTTCGCGCCTTTGTAGGCGCTGGCGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTTCTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTTATGCCTGAGGATTATGCATCTATGCATATGCTCGTCCAACGTCCTTTTTTGCAATCCATTGCCAGTTTGTTTAGAAATTAGAACAATCTCTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCGAAGAGTGCACACTTGATTGTCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGTTT ]
consensusID : consensus_9822#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 770 fasta sequence
[TGCGGCGCGCTGGTCGTTCCTGGAGGGGACGGCGAGGGGCGTGTCTACGTGGGCGACGGGTGGTTCCACGA-CGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTG-GTCACCACCA-TGACC-GATGGCC-GCGTCGTGGAGGTGCCCGGCGGCGGCGGCGCGGGTGCGGGGGAGGGGAAGGTGGAGGCGCGGGTGGTCGTGGCAGACCCCGGGGCGGCCGGGAGGTCGGCGACGGGGCTCACCCTGGACGCGCCGAGACGGCGCCTGCTCGTGGTGTACACCGACTTGGCGCCGTGGTTCGGGTACGCCGCCGTGGCCGCCTACGAGCTCGGCTCCTGGCGCCGCCTTTTCCTCGTCCGCCTCGACCGGCCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAATGTGAAAGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTTCCCGACGAGGCTGGTCGGCGACGGGCTGGTGAGCCGGCTGGTCGAGAGGACGACGATGGGAAACGGCGTCGTCCG]
[+] EMBL BU673907 [TGCGGCGCGCTGGTCGTTNCTGGAGGGGACGGCGAGGGGCGTGTCTACGTGGGCGACGGGTGGTTCCACGACCGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTGTGTCACCACCACTGACCTGATGGCCTGCGTCG ]
[+] EMBL CB965184 [ gCGTTCCTGGAGGGGACGGCGAGGGGCGTGTCTACGTGGGCGACGGGTGGTTCCACGA CGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTG GTCACCACCA TGACC GATGGCC GCGTCGTGGAGGTGCCCGGCGGCGGCGGCGCGGGTGCGGGGGAGGGGAAGGTGGAGGCGCGGGTGGTCGTGGCAGACCCCGGGGCGGCCGGGAGGTCGGCGACGGGGCTCACCCTGGACGCGCCGAGACGGCGCCTGCTCGTGGTGTACACCGACTTGGCGCCGTGGTTCGGGTACGCCGCCGTGGCCGCCTACGAGCTCGGCTCCTGGCGCCGCCTTTTCCTCGTCCGCCTCGACCGGCCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGCGTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCTGTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGGCCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGGCGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAATGTGAAAGGCTCGCTGAAGACCGGCGACGGGCTGGCGCTGCTGTTCCCGACGAGGCTGGTCGGCGACGGGCTGGTGAGCCGGCTGGTCGAGAGGACGACGATGGGAAACGGCGTCGTCCG]
[+] EMBL CB966954 [ CGTTCCTGGAGGGGACGGCGAGGGGCGTGTCTACGTGGGCGACGGGTGGTTCCACGA CGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTG GTCACCACCA TGACC GATGGCC GCGTCGTGGAGGTGCCCGGCGGCGGCGGCGCGGGTGCGGGGGAGGGGAAGGTGGAGGCGCGGGTGGTCGTGGCAGACCCCGGGt ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9822#0 GATCGGGCCAAATCCTCCTCCCCTTCGTCGCCGCTGCTGTAGGCTACCCAAATCTCGCCG 60
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 CTGCTGTTGGCTACTCAAATCTCGCCGCTGCTGTAGGCTACCCAATCGCTGCACCATGTG 120
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 TGGTGACTGCTGCGGCCGCGGTGCCGGGGGAGCCGCCGAGGCGGGGGCGGCCGGCGCCGG 180
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 CGGCGGGAGGAAGCGGGGGTGCGCGGGGACGGCGCTCGCCCTCGTGGCGCTGGCGGCCGC 240
consensus_9822#1 -------------------------------------------------------TGCGG 5
**
consensus_9822#0 CGCGGCGGTCGCCGTCCTGGAGGGCACCGCCGGCGGTGTCTCCTACGTGGGCGACGGGTG 300
consensus_9822#1 CGCGCTGGTCGT--TCCTGGAGGGGACGGCGAGGGGCGTGTC-TACGTGGGCGACGGGTG 62
**** ***** ********** ** ** * ** ** ** *****************
consensus_9822#0 GCTCCACGAGTGCGCCAAGTGGGACGCCGACGGACGGCGGCTGCT---------CGTGTC 351
consensus_9822#1 GTTCCACGACGGCGTCAGGTGGGACGCCGAGGGCGGGCGGTTCCTGGTCACCACCATGAC 122
* ******* *** ** ************ ** ***** * ** * ** *
consensus_9822#0 CAACTTCTTCGGCGCCGGCGTGTCCGAGCTCCGCGCCGAGGCGAAAGGGAAGGAGAAGGA 411
consensus_9822#1 CGATGGCCGCGTCGTGGAGGTGCCCGGCGGCGGCGGCGCGGGTGCGGGGGAGGGGAAGGT 182
* * * ** ** * *** *** * *** ** ** *** *** *****
consensus_9822#0 GGAGGAGCGCGTGGTCCTGGCGGATCCCGACGTCGCCGGGAGGGTCGCGCTGGGTCTCAC 471
consensus_9822#1 GGAGGCGCGGGTGGTCGTGGCAGACCCCGGGGCGGCCGGGAGGTCGGCGACGGGGCTCAC 242
***** *** ****** **** ** **** * ********* *** *** *****
consensus_9822#0 CGTCGACGCGCCGAGGGGGCGCCTGCTCATCGTCTACGCCGACCGGTTGCCGCGGTTCGC 531
consensus_9822#1 CCTGGACGCGCCGAGACGGCGCCTGCTCGTGGTGTACACCGACTTGGCGCCGTGGTTCGG 302
* * *********** *********** * ** *** ***** * **** ******
consensus_9822#0 GTACTCCGCCGTCGCCGCGTACGACCTCGCCTCGTGGCGCCGCCTCTTCCTCACCCGCCT 591
consensus_9822#1 GTACGCCGCCGTGGCCGCCTACGAGCTCGGCTCCTGGCGCCGCCTTTTCCTCGTCCGCCT 362
**** ******* ***** ***** **** *** *********** ****** ******
consensus_9822#0 CGACGGACCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGC 651
consensus_9822#1 CGACCGGCCAGGTGATTCAACGCTCGCCGACGACGTGGCCGTCGACGAGGAAGGCAACGC 422
**** * *****************************************************
consensus_9822#0 GTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCT 711
consensus_9822#1 GTACGTGACGGACGCCAAGGGCAACAAGATCTGGAAGGTGAGCCCGGACGGCGAGCCGCT 482
************************************************************
consensus_9822#0 GTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGG 771
consensus_9822#1 GTCCGTCATCAAGAACGCCACCTTCTTCCAGAGGCCAGGGTGGATCAACAACTTCGTCGG 542
************************************************************
consensus_9822#0 CCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGG 831
consensus_9822#1 CCTGAACGGCATCGTCTACCACCCCAACGGCTACCTCCTCGTCATCCACACCTCCGGCGG 602
************************************************************
consensus_9822#0 CGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAAGGTGAAGGGCTC 891
consensus_9822#1 CGACCTCTTCAAGGTCTGCCCGAAGACGGGGAGCGTGCACGTCGTCAATGTGAAAGGCTC 662
************************************************ ***** *****
consensus_9822#0 GCTGAAGACCGGCGACGGGCTGGCGCTGCTGTCCCCGACGAGGCTGGTCGCCGCCGGCCT 951
consensus_9822#1 GCTGAAGACCGGCGACGGGCTGGCGCTGCTGTTCCCGACGAGGCTGGTCGGCGACGGGCT 722
******************************** ***************** ** *** **
consensus_9822#0 GGTGAGCCGGCTGGTCGAGAGCGACGACGACTGGGAGACCGCCGTCGTCACCGGCCGGTA 1011
consensus_9822#1 GGTGAGCCGGCTGGTCGAGAG-GACGACGA-TGGGAAAC-GGCGTCGTCCG--------- 770
********************* ******** ***** ** * *******
consensus_9822#0 CGTCGGCCCGGCTCACCGGATCGGCTCGTCGGCGACGGTGAAGGATGGCGACGTGTACAT 1071
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 CAACCACATCATCGGGTTCGGGCTCGGCAAGAAGACGCATGTCATCTCCAAGGCGGCGTT 1131
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 CGCGCCTTTGTAGGCGCTGGCGGACTGATTGTTGACGCCTGAGGATTATGCTTCAAGGTT 1191
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 CTTTGATCTCGTGTTACTTCGGTGACAGATTGATTGTTTTATGCCTGAGGATTATGCATC 1251
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 TATGCATATGCTCGTCCAACGTCCTTTTTTGCAATCCATTGCCAGTTTGTTTAGAAATTA 1311
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 GAACAATCTCTGCTTGCAATTGCACGTGTTATTTTTGTGCAAATACCAGATTAATATGCG 1371
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 AAGAGTGCACACTTGATTGTCAATAGAAGTATGACTATGAACTAGTCCTACTATTTCAGT 1431
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 TTCAATTGTAGGAGAGTAAATTTCGCAAGAATGCAATTATTTTGTCAACAGGTATTTTGA 1491
consensus_9822#1 ------------------------------------------------------------
consensus_9822#0 TTGGTGACTTGTATAACAGTCCAAGTTGATTCCATTTGCCAGT 1534
consensus_9822#1 -------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||