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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 728 fasta sequence
[AATTCGCCCTTGGACCTGACTGGACTGAAGGAGTGAAGACCTTTCCCCAAGCCGAACGCAATCTGCTCGTTCGTTCCTCGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA-TTACCAATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA-CCTGTCAATGGACTTCCG-AGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGACCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAAACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAGCTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAATTGACAACTTTCCAGNCTGCTGAAATTTGTTCAGTTGTGCTGATGTTTCAATTGCTTTATTTTCTGTGTTAGCTGTTCACTTTAAAAAAA]
[+] EMBL CF314195 [AATTCGCCCTTGGACCTGACTGGACTGAAGGAGTGAAGACCTTTCCCCAAGCCGAACGCAATCTGCTCGTTCGTTCCTCGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA TTACCAATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA CCTGTCAATGGACTTCCG AGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGACCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAAACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAGCTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAA ]
[+] EMBL CA764911 [ aggggggCCACAAGCCGAACGCAATCTGCTCGTTCGTTCCTTGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCACTTACCAATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA CCTGTCAATGGACTTCCG AGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAAAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGACCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAAACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAGCTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAATTGACAACTTTCCAGNCTGCTGAAA ]
[+] EMBL C28803 [ CGCAATCTGCTCGTTCGTTCCTCGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA TTACCAATGAAAGGAGCCGCAA GTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA CCTGTCAATGGACTTCCG AGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGNTTATCTCCGACCGCATACCGTCTC ]
[+] EMBL D42503 [ CCTCGCTTCTGGGACTACGGAACTCGGAATTGAGGCATCCTGCNCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA TTACCAATGAAAGGAGCCGCAA GTTTGTGGTGGAAAATGCAACCAGGCAAATCAAA CCTGTCAATGGACTTCCG AGGTTGATGACAATTACTACTCCTCAGAAGCATNGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGC ]
[-] EMBL CF314194 [ TGCGCAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCA TTACCAATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAACCCTGTCAATGGACTTCGGNAGG TGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCCAATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCACCTCCTTT CCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGCGGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGACCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAAACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAGCTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAATTGACAACTTTCCAGGCTGCTGAAATTTGTTCAGTTGTGCTGATGTTTCAATTGCTTTATTTTCTGTGTTAGCTGTTCACTTTAAAAAAA]
consensusID : consensus_9834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 571 fasta sequence
[CCAGAGGGCGAGACAAGGGGGATCGTGCCCAACTTTATACAAGTTTCACTCAAGAGATTCAAGATACGGGCCTTGAATTCCCATTCCCAATAAAAGGACCCGCAAGGTTTGTGGTGGAAAATGCACCCAGGCAAATCAAACCTGTCAATGGCCTTCCGAAAGCATGGCAAGGAAAATTTTTCCAATGTCTCAGGGCTCACAAAGGATGAAAACTTCGACCCTTTTGTTGCTTTTAGCAGGCCCCCTCCTTTTCCCCCAGTTTTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGGGGGGGGGATGAAAACAAAAATTAAGCCGGAATTTGAATGAAATTTGTGGTTTATCTCCGTCCGCATACCGTTTCCAGAGGTGTTGTTCATTCTAAGTTGTAGCAATCAACTTCTAGAAAAACTTGATGTAGCATTAGCTTTGCCCTTTTTCCTGCTGTAGCCTTGTATGGCCCAAGTAAACTTCTGTCAAAACTGTGTTGCTAATGTTTCAGTAGCAATTTGACAACTTTACAGTTTGTTAAAATTTGTTCAAAAAAAAAAAAAAAAA]
[-] EMBL CA760969 [CCAGAGGGCGAGACAAGGGGGATCGTGCCCAACTTTATACAAGTTTCACTCAAGAGATTCAAGATACGGGCCTTGAATTCCCATTCCCAATAAAAGGACCCGCAAGGTTTGTGGTGGAAAATGCACCCAGGCAAATCAAACCTGTCAATGGCCTTCCGAAAGCATGGCAAGGAAAATTTTTCCAATGTCTCAGGGCTCACAAAGGATGAAAACTTCGACCCTTTTGTTGCTTTTAGCAGGCCCCCTCCTTTTCCCCCAGTTTTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGGGGGGGGGATGAAAACAAAAATTAAGCCGGAATTTGAATGAAATTTGTGGTTTATCTCCGTCCGCATACCGTTTCCAGAGGTGTTGTTCATTCTAAGTTGTAGCAATCAACTTCTAGAAAAACTTGATGTAGCATTAGCTTTGCCCTTTTTCCTGCTGTAGCCTTGTATGGCCCAAGTAAACTTCTGTCAAAACTGTGTTGCTAATGTTTCAGTAGCAATTTGACAACTTTACAGTTTGTTAAAATTTGTTCAAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9834#0 AATTCGCCCTTGGACCTGACTGGACTGAAGGAGTGAAGACCTTTCCCCAAGCCGAACGCA 60
consensus_9834#1 ------------------------------------------------------------
consensus_9834#0 ATCTGCTCGTTCGTTCCTCGCTTCTGGGACTACGGAACTCGGAATT-GAGGCATCCTGCG 119
consensus_9834#1 -------------------------------CCAGAGGGCGAGACAAGGGGGATCGTGCC 29
* ** ** * * ** *** ***
consensus_9834#0 CAACTTGATACAAGTTTCAATCAAGAGATTCAAGATACAGGCATCGAATTACCATTACCA 179
consensus_9834#1 CAACTTTATACAAGTTTCACTCAAGAGATTCAAGATACGGGCCTTGAATTCCCATTCCCA 89
****** ************ ****************** *** * ***** ***** ***
consensus_9834#0 ATGAAAGGAGCCGCAAGGTTTGTGGTGGAAAATGCAACCAGGCAAATCAAACCTGTCAAT 239
consensus_9834#1 ATAAAAGGACCCGCAAGGTTTGTGGTGGAAAATGCACCCAGGCAAATCAAACCTGTCAAT 149
** ****** ************************** ***********************
consensus_9834#0 GGACTTCCGAGGTTGATGACAATTACTACTCCTCAGAAGCATGGCAAGGAAAATAATTCC 299
consensus_9834#1 GGCCTTCCGA--------------------------AAGCATGGCAAGGAAAATTTTTCC 183
** ******* ****************** ****
consensus_9834#0 AATGATTCAGTGCTCACAGAGGATGAAAACATCGAGCCACTTGTTGCTTTTAGCAGGCCA 359
consensus_9834#1 AATGTCTCAGGGCTCACAAAGGATGAAAACTTCGACCCTTTTGTTGCTTTTAGCAGGCCC 243
**** **** ******* *********** **** ** *******************
consensus_9834#0 CCTCCTTTGCCACCAGTTCTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGC 419
consensus_9834#1 CCTCCTTTTCCCCCAGTTTTTGGCCCCTTGATCATGCTCTCACTTTTCAATATGTCAAGG 303
******** ** ****** ****************************************
consensus_9834#0 GGCGGGGATGAAAACAAAAATTAAGCCGGAATCTGAATGAAATATGTGGTTTATCTCCGA 479
consensus_9834#1 GGGGGGGATGAAAACAAAAATTAAGCCGGAATTTGAATGAAATTTGTGGTTTATCTCCGT 363
** ***************************** ********** ***************
consensus_9834#0 CCGCATACCGTCTCCAGAGGTGTTGTACATACTAAGTTGTAGCAATCAACTACTAGAAAA 539
consensus_9834#1 CCGCATACCGTTTCCAGAGGTGTTGTTCATTCTAAGTTGTAGCAATCAACTTCTAGAAAA 423
*********** ************** *** ******************** ********
consensus_9834#0 ACATGATGTAGCATAAGCTATGCACTGTTTACTGCTGTAGACTTGTATGGACCAAGTAAG 599
consensus_9834#1 ACTTGATGTAGCATTAGCTTTGCCCTTTTTCCTGCTGTAGCCTTGTATGGCCCAAGTAAA 483
** *********** **** *** ** *** ********* ********* ********
consensus_9834#0 CTGCTGTCAAAACTCTGTTGCTAATGTTTCAGTAGCGAATTGACAACTTTCCAGNCTGCT 659
consensus_9834#1 CTTCTGTCAAAACTGTGTTGCTAATGTTTCAGTAGCAATTTGACAACTTTACAGTTTGTT 543
** *********** ********************* * *********** *** ** *
consensus_9834#0 GAAATTTGTTCAGTTGTGCTGATGTTTCAATTGCTTTATTTTCTGTGTTAGCTGTTCACT 719
consensus_9834#1 AAAATTTGTTCAAAAAAAAAAAAAAAAA-------------------------------- 571
*********** *
consensus_9834#0 TTAAAAAAA 728
consensus_9834#1 ---------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||