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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9848#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1524 fasta sequence
[TTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGCGCCGCGGGGGTTCCGTTCCGTCGTGGAGCGGCTGGCCCCGGAGCCGGAGGCCAAGGGGCGTGGACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTCGCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAGCAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCTGAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCTCCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGTGATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTGAAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGCCAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAACAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGTGACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGATTCATGGGACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGGAAAAGGCGAAACAATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATTAATTAAGATGGTGT]
[+] EMBL AK111895 [TTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGCGCCGCGGGGGTTCCGTTCCGTCGTGGAGCGGCTGGCCCCGGAGCCGGAGGCCAAGGGGCGTGGACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTCGCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAGCAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCTGAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCTCCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGTGATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTGAAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGCCAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAACAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGTGACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGATTCATGGGACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGGAAAAGGCGAAACAATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATTAATTAAGATGGTGT]
[+] EMBL AK112093 [TTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGCGCCGCGGGGGTTCCGTTCCGTCGTGGAGCGGCTGGCCCCGGAGCCGGAGGCCAAGGGGCGTGGACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTCGCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAGCAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCTGAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCTCCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGTGATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTGAAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGCCAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAACAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGTGACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGATTCATGGGACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGGAAAAGGCGAAACAATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATTAATTAAGATGGTGT]
[+] EMBL CB652361 [ AGGGGCCTGTACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTCGCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAGCAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCTGAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCTCCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGTGATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTGAAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGCCAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAACAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGTGACTC ]
[+] EMBL D42466 [ AGTTCCATTGTGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACCAAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAAACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATCCCGTTACCTGACCCAAACAT ]
[+] EMBL AU093602 [ AGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATTAAaaaa ]
[+] EMBL AU093601 [ AGCAGGGGTAGAGATAGAGTTGGTCCCATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAATGGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGCAACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTTATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGACGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTTGAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTG ]
consensusID : consensus_9848#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 343 fasta sequence
[AAACCAACGACGGCACCCCAAACCNCCTCCGCCTCCGCCGCCGCTTCCGCTTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGGCNGTGGGNGNTTCCGTTCCGTCGTGGAGCGGCTNGCCCCGGAGCCGGANAAAGGNGTTTGTGAACGGTNGAGGGTAATCCGTGGTGTTGAGGGAGCCTTTGTGAGGTTGTGGTTCGGGCTCTCGCGGCGGCTCTTTCCATGGNGGAGAGGCGGTNCGGCTACAGGGA]
[+] EMBL C27131 [AAACCAACGACGGCACCCCAAACCNCCTCCGCCTCCGCCGCCGCTTCCGCTTAACCTCCTCGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCGTTCGGGGTTCGCGTTTTTATCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGGCNGTGGGNGNTTCCGTTCCGTCGTGGAGCGGCTNGCCCCGGAGCCGGANAAAGGNGTTTGTGAACGGTNGAGGGTAATCCGTGGTGTTGAGGGAGCCTTTGTGAGGTTGTGGTTCGGGCTCTCGCGGCGGCTCTTTCCATGGNGGAGAGGCGGTNCGGCTACAGGGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9848#0 --------------------------------------------------TTAACCTCCT 10
consensus_9848#1 AAACCAACGACGGCACCCCAAACCNCCTCCGCCTCCGCCGCCGCTTCCGCTTAACCTCCT 60
**********
consensus_9848#0 CGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGCCGTTCGGGGTTCGCGTTTTTA 70
consensus_9848#1 CGCTCTCCTTGACCCCCCCGCCTTTCAATCGGGCGCGGC-GTTCGGGGTTCGCGTTTTTA 119
*************************************** ********************
consensus_9848#0 TCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGCGCC 130
consensus_9848#1 TCGGATCGCCTCGTTCGTTCCCTCCCCTCCCCTCCCCTTCGCGCGGTTCTTTGCCGGCNG 179
********************************************************
consensus_9848#0 GCGGGGGTTCCGTTCCGTCGTGGAGCGGCTGGCCCCGGAGCCGGAGGCCAAGGGGCGTGG 190
consensus_9848#1 TGGGNGNTTCCGTTCCGTCGTGGAGCGGCTNGCCCCGGAGCCGGANAAAGGNGTTTGTGA 239
** * *********************** ************** * ***
consensus_9848#0 ACGGTGGAGGGTAATCCGTGGTGTTGAGGGAGCCTTGGTGAGGTGGTGGTTCGGGCTCTC 250
consensus_9848#1 ACGGTNGAGGGTAATCCGTGGTGTTGAGGGAGCCTTTGTGAGGTTGTGGTTCGGGCTCTC 299
***** ****************************** ******* ***************
consensus_9848#0 GCGGCGGCGTCTTCCATGGGGGAGAGGCGGTCCGGCTACAGGGACAGAGGGGGCGGCGAG 310
consensus_9848#1 GCGGCGGCTCTTTCCATGGNGGAGAGGCGGTNCGGCTACAGGGA---------------- 343
******** ******** *********** ************
consensus_9848#0 CAGGGAAGGTATTGGAGGCCACCGCGCTCTCACGGAAATGGAAATTTCTCAGTTCCATTG 370
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 TGGGAAAAGAAATTTTGCACTGATGCTTGTGCAATCCCATGGGGTAAACTCTGTGAAACC 430
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 AAGAAATTGATGTCATTGTACAAAAATGTGGTTGACTGGGATGATTCAGCTGCATTAGAA 490
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 ACTTTCAACGATGCAAAAGCTCGTTTCTGTGCTGTATACCATGGCCAACCTTGTGATATC 550
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 CCGTTACCTGACCCAAACATGTATATTGACATGGTTAACCAAGATGAACATGTTGATCCT 610
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 GAATTGGTGGCCGACCTTGAGAAATCGCGGCGTTCTTATCCCAAAAGGGATAATACAGCT 670
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 CCTGATGGCTGGGACTCCTTTATATTTACAAACAAGCCAGTTCCAGCCACAGGGTGGGGT 730
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 GATGGGGAAACAAGCAACACACCTGGTCAGCAATACCCTACGAACTGGAATAATCACGTG 790
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 AAACAGCCGACTGAAGCAAATTGCATGCAAAGTTCAGTAAATTGGGATAATTATGTCAGC 850
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 CAGCCTCCTCAAGCAACAGTTCAGCAAAGCTCGGGAAATTGGGACATGTATGTTAAACAA 910
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 CAAGATCAAGCTAATAACTGGGAGGCACCAACCATGCCTGGCACCTGGGACATGAAGGGT 970
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 GACTCTCTGGATGCATGGAAGCGTGATTCCGGCTGGGGTTCTGCAGCTATAGATTCATGG 1030
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 GACAACCATAGAGAGAACTGTTATGTACCTGACAGCCAGGGCTGGTCTTACGGTCACTGG 1090
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 AAAAGGCGAAACAATGAGTCGAGCAGAAGGAATAGCAGGGGTAGAGATAGAGTTGGTCCC 1150
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 ATTAGCTCAAAGGCCATGAAACCAAAGTACCATTCTGAGGAGCGTAATGGTGCTAATAAT 1210
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 GGCTGGAGGCACTGCCGAGTTAGAAATAACATGCAGTACTCCTATGAGAATCCTGGTTGC 1270
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 AACCAGTCACTAGCAATGTGAGGAAGTGCATTGGACAGAAAATGAGGACCCGTGTAGGTT 1330
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 ATGTTTCCTTTTTTCTTGAAGTTTTTGTAGATAGTACGAACCACCACAAACCTAGAGTGA 1390
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 CGATTTTGTCTAGCCATTTGCATGCCCGTTGTACATATCTATATCTATGTATATGTTTTT 1450
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 GAGCTCAGTCATTTTTGTTTACTGGCTGTATTGCAGCTTCATTGTTGCAAAGTGGGAATT 1510
consensus_9848#1 ------------------------------------------------------------
consensus_9848#0 AATTAAGATGGTGT 1524
consensus_9848#1 --------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||