cluster # 9853

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Oryza sativa
cluster # 9853 cluster # 9853 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9853#0 length = 804 sequences # 6

consensus_9853#1 length = 458 sequences # 1

consensusID : consensus_9853#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 804
fasta sequence

                              [CCAACAAGCATCCCGACCACCACCACCCCCCGCTACCCCAGGAGAGATTCACCCGCAATGTCCGACGAGGCCACCAGGCGCTTGGCCGGGGGCGGCGGGGGCGGCGCGGCGCTGAGGGCCTCCTCCGACGTCGACCGCAAGCCGGCCGCCGCGGGCTCCCCGCCTCCTGGCGCCGCCGCCGCCGCGGGGCACAAGATCCAGCTCAAGAGCGCCGACATGAAGGAGGAGATGCGCCAGGAGGCCTTCGACATCGCCCGCGTCGCGTTCGAGAAGCACACCATGGAGAAGGACATCGCGGAGTACATCAAGAAGGAGTTCGACAAGAACCA-CGGCCCTACCTGGCAC-TGCATCGTCGGCCGCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTCTAAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGCGTAGCTAATATCCCCTGCGCTTGTTGTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGCCTGGAATTCTGAGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATCTTTTCCATATTCCAGCAAATGTGAGATTAGATTGTGTGTCTATTTTACGTCTGATACATCTAGGTGGTGTCCTGACATTGCCTTATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCATC-ACAA-GGTAAAACTTGTGCTGATCTGCTTATATTATGCATTCTCTGGCCACCCGGGTTGCAGAAATTGC-ATGATTTCAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL AK107950             [CCAACAAGCATCCCGACCACCACCACCCCCCGCTACCCCAGGAGAGATTCACCCGCAATGTCCGACGAGGCCACCAGGCGCTTGGCCGGGGGCGGCGGGGGCGGCGCGGCGCTGAGGGCCTCCTCCGACGTCGACCGCAAGCCGGCCGCCGCGGGCTCCCCGCCTCCTGGCGCCGCCGCCGCCGCGGGGCACAAGATCCAGCTCAAGAGCGCCGACATGAAGGAGGAGATGCGCCAGGAGGCCTTCGACATCGCCCGCGTCGCGTTCGAGAAGCACACCATGGAGAAGGACATCGCGGAGTACATCAAGAAGGAGTTCGACAAGAACCA CGGCCCTACCTGGCAC TGCATCGTCGGCCGCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTCTAAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGCGTAGCTAATATCCCCTGCGCTTGTTGTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGCCTGGAATTCTGAGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATCTTTTCCATATTCCAGCAAATGTGAGATTAGATTGTGTGTCTATTTTACGTCTGATACATCTAGGTGGTGTCCTGACATTGCCTTATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCA                                                                                                           ]
[+] EMBL AU078347             [                                  ACCCCAGGAGAGATTCACCCGCAATGTCCGACGAGGCCACCAGGCGCTTGGCCGGGGGCGGCGGGGGCGGCGCGGCGCTGAGGGCCTCCTCCGACGTCGACCGCAAGCCGGCCGCCGCGGGCTCCCCGNCTCCTGGCGCCGCCGCCGCCGCGNGGCACAAGATCCAGCTCAAGAGCGCCGACATGAAGGAGGAGATGCGCCAGGAGGCCTTCGACATCGNCCGCGTCG GTTCGAGAAGCACACCATGGAGAAGGACATCGCGGAGTACATCAAGAAGGAGTTCGACAAG ACCA CGGGCCTACCTTGGACTTTAATCGTCGGCNGAANTTTGGGGTCCT                                                                                                                                                                                                                                                                                                                                                                                                                                                  ]
[+] EMBL CF314051             [                                                                                                                                                                                                                                                   TTCGACATCGCCCGCGTCGCGTTCGAGAAGCACACCATGGAGAAGGACATCGCGGAGTACATCAAGAAGGAGTTCGACAAGAACCA CGGCCCTACCTGGCAC TGCATCGTCGGCCGCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTCTAAAGC                                                                                                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BI799735             [                                                                                                                                                                                                                                                                                                 gggTCGCGGAGTACATCAAGAAGGAGTTCGACAAGAACCACCGGCCCTACCTGGCAC TGCATCGTCGGCCGCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTCTAAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGCGTAGCTAATATCCCCTGCGCTTGTTGTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACC AAGCTGGAAGCCTGGAATTCTGAGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATCTTTTCCATATTCCAGC AATGTGAGATTAGATTGTGTGTCTATTTTACGTCTGATACATCTAGGTGGTGTCCTGACATTGCCTTATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCATC ACAACGGTAAAACTTGTGCTGATCTGCTTATATTATGCATTCTCTGGCCACCCGGGTTGCAGAAATTGC ATGATTTCAAAAAA                    ]
[+] EMBL AU058127             [                                                                                                                                                                                                                                                                                                                 CAAGAAGGAGTTCGACAAGAACCA CGGCCCTACCTGGCAC TGCATCGTCGGCCGCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTCTAAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGCGTAG TAATATCCCCTGCGCTTGTTGTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGCCTGGAATTCTGAGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATCTTTTCCATATTCCAGCAAATGTGAGATTAGATTGTGTGTCTATTTTACGTCTGATACATCTAGGTGGTGTCCTGACANTGCCTTATTGTAATCTGATTGCCGGAAAG CAG CAGAGGTTGTCATCAACAA GG NAAACTTGTGCT                                                                                    ]
[+] EMBL AU161810             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           TCATCAACAA GGTAAAACTTGTGCTGATNTGCTTATATTATGCATTCTCTGGCCA CCGGGTTGCAGAAATTGCAATGATTTCAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9853#0
CCAACAAGCATCCCGACCACCACCACCCCCCGCTACCCCAGGAGAGATTCACCCGCAATG
TCCGACGAGGCCACCAGGCGCTTGGCCGGGGGCGGCGGGGGCGGCGCGGCGCTGAGGGCC
TCCTCCGACGTCGACCGCAAGCCGGCCGCCGCGGGCTCCCCGCCTCCTGGCGCCGCCGCC
GCCGCGGGGCACAAGATCCAGCTCAAGAGCGCCGACATGAAGGAGGAGATGCGCCAGGAG
GCCTTCGACATCGCCCGCGTCGCGTTCGAGAAGCACACCATGGAGAAGGACATCGCGGAG
TACATCAAGAAGGAGTTCGACAAGAACCACGGCCCTACCTGGCACTGCATCGTCGGCCGC
AACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTCT
AAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGCGTAGCTAATATCCCCTGCGCTTGTT
GTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGCCTGGAATTCTG
AGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATCTTTTCCATATTCCAGCAAATGTGA
GATTAGATTGTGTGTCTATTTTACGTCTGATACATCTAGGTGGTGTCCTGACATTGCCTT
ATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCATCACAAGGTAAAACTTGTGC
TGATCTGCTTATATTATGCATTCTCTGGCCACCCGGGTTGCAGAAATTGCATGATTTCAA
AAAAAAAAAAAAAAAAAAAAAAAA

consensusID : consensus_9853#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 458
fasta sequence

                              [ACATCGCGGAGTACATCAAGAAGGAGTTCGACAAGAACCACGGCCCTACCTGGCATTGCATCGTCGGCCGCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTTTAAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGGGTAGTTAATATCCCCTGCGCTTGTTGTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGCCTGGAATTTTGAGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATTTTTTCCATATTCCAGCAAATGTGAGATTAGATTGTGTGTCTATTTTACGTCTGATACATTTAGGTGGTGTCCTGACATTGCCTTATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGGCGT]

[-] EMBL CF314052             [ACATCGCGGAGTACATCAAGAAGGAGTTCGACAAGAACCACGGCCCTACCTGGCATTGCATCGTCGGCCGCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTTTAAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGGGTAGTTAATATCCCCTGCGCTTGTTGTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGCCTGGAATTTTGAGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATTTTTTCCATATTCCAGCAAATGTGAGATTAGATTGTGTGTCTATTTTACGTCTGATACATTTAGGTGGTGTCCTGACATTGCCTTATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGGCGT]




>consensus_9853#1
ACATCGCGGAGTACATCAAGAAGGAGTTCGACAAGAACCACGGCCCTACCTGGCATTGCA
TCGTCGGCCGCAACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTT
ACATCGATTTTAAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGGGTAGTTAATATCCC
CTGCGCTTGTTGTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGC
CTGGAATTTTGAGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATTTTTTCCATATTCC
AGCAAATGTGAGATTAGATTGTGTGTCTATTTTACGTCTGATACATTTAGGTGGTGTCCT
GACATTGCCTTATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCATCAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAACACTGTCATGGCGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9853#0      CCAACAAGCATCCCGACCACCACCACCCCCCGCTACCCCAGGAGAGATTCACCCGCAATG 60
consensus_9853#1      ------------------------------------------------------------
                                                                                  

consensus_9853#0      TCCGACGAGGCCACCAGGCGCTTGGCCGGGGGCGGCGGGGGCGGCGCGGCGCTGAGGGCC 120
consensus_9853#1      ------------------------------------------------------------
                                                                                  

consensus_9853#0      TCCTCCGACGTCGACCGCAAGCCGGCCGCCGCGGGCTCCCCGCCTCCTGGCGCCGCCGCC 180
consensus_9853#1      ------------------------------------------------------------
                                                                                  

consensus_9853#0      GCCGCGGGGCACAAGATCCAGCTCAAGAGCGCCGACATGAAGGAGGAGATGCGCCAGGAG 240
consensus_9853#1      ------------------------------------------------------------
                                                                                  

consensus_9853#0      GCCTTCGACATCGCCCGCGTCGCGTTCGAGAAGCACACCATGGAGAAGGACATCGCGGAG 300
consensus_9853#1      -------------------------------------------------ACATCGCGGAG 11
                                                                       ***********

consensus_9853#0      TACATCAAGAAGGAGTTCGACAAGAACCACGGCCCTACCTGGCACTGCATCGTCGGCCGC 360
consensus_9853#1      TACATCAAGAAGGAGTTCGACAAGAACCACGGCCCTACCTGGCATTGCATCGTCGGCCGC 71
                      ******************************************** ***************

consensus_9853#0      AACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTCT 420
consensus_9853#1      AACTTCGGGTCCTACGTAACACACGAGACGAACTACTTTGTGTATTTTTACATCGATTTT 131
                      ********************************************************** *

consensus_9853#0      AAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGCGTAGCTAATATCCCCTGCGCTTGTT 480
consensus_9853#1      AAAGCCGTCTTGCTATTCAAATCTGGGTGATTGGGGTAGTTAATATCCCCTGCGCTTGTT 191
                      ********************************** **** ********************

consensus_9853#0      GTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGCCTGGAATTCTG 540
consensus_9853#1      GTCTTGTATGCCTCTTTCCTCCGCGTTGTCTGCAACCAAAGCTGGAAGCCTGGAATTTTG 251
                      ********************************************************* **

consensus_9853#0      AGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATCTTTTCCATATTCCAGCAAATGTGA 600
consensus_9853#1      AGAGCCTGCATGTTGTTGATGTATCAGCCGCGGATTTTTTCCATATTCCAGCAAATGTGA 311
                      *********************************** ************************

consensus_9853#0      GATTAGATTGTGTGTCTATTTTACGTCTGATACATCTAGGTGGTGTCCTGACATTGCCTT 660
consensus_9853#1      GATTAGATTGTGTGTCTATTTTACGTCTGATACATTTAGGTGGTGTCCTGACATTGCCTT 371
                      *********************************** ************************

consensus_9853#0      ATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCATCACAAGGTAAAACTTGTGC 720
consensus_9853#1      ATTGTAATCTGATTGCCGGAAAGTCAGACAGAGGTTGTCATCAAAAAAAAAAAAAAAAAA 431
                      ******************************************* **   ****       

consensus_9853#0      TGATCTGCTTATATTATGCATTCTCTGGCCACCCGGGTTGCAGAAATTGCATGATTTCAA 780
consensus_9853#1      AAA-----AAAAAAAAAACACTGTCATGGCGT---------------------------- 458
                        *       * *  *  ** * **  * *                              

consensus_9853#0      AAAAAAAAAAAAAAAAAAAAAAAA 804
consensus_9853#1      ------------------------