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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9858#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 2148 fasta sequence
[CTCGCCGTCAAATCTCCCCTCTTTCTCGCCGCCGGCGAGCAGCAGAAGCAGCGGCACCAGCACCACCGGCTGTAGGCGCGATCTTGTAGGCTCATCGGAGATGGGGAAGAAGCAGCATAGCAAGGACCGGATGTTCATAACGCGGACGGAGTGGGCGACGGAGTGGGGCGGCGCCAAGCAGAAGGAGGCCGGCACGCCCTTCAAGCGCCTTCCCTTCTACTGCTGCGCGCTTACGTTTTTACCATTTGAGGATCCAGTGTGCACAGCAGATGGAAGCGTCTTTGATTTGATGAGCATAATTCCATACATTAAGAAGTTCGGGAAGCACCCAGTAACAGGAACACCACTCAAGCAGGAAGATCTAATGCCTTTAACATTCCACAAGAACTCAGATGGAGAGTTCCAGTGCCCTGTTTTGAATAAAGTTTTTACAGAATTCACGCATATAGTTGCTGTAAAGACTACTGGGAACGTCTTCTGTTATGAGGTGGGGTTTGGCAATCCAAGAACTCAACATCAAGCCAAAGAATTGGAGAGAATTGCTAACTGATGAGCCCTTTACACGAAATGACTTGATAACAATTCAGAATCCAAATGCGGTTGATAGCAAGATCCTAGGTGAATTTGACCATGTCAAGAAAGGCCTCAAACTTGAAGATGAAGAGTTGCAACGAATGAAAAATGATCCAACCTACAACATAAATATTTCTGGTGATCTTAAGCAAATGATTAAGGAACTTGGAACTGAAAAGGGAAAGTTAGCTTTTTTGCATGGTGGGGGAGGGCAGAAAGCTCAAAAGGAAAGAGCTGCTGCACTTGCTGCTATATTGGCAAAAAAGGAGAAGGATGACTCAAAATCTGGCAAAGAACCTAAACCTCATCAGCCTTTCAGTATTGTAGATGCTGCTTCTGCTTCTGTTCATGGCAGAAGTGCAGCCGCAGCAAAGGCTGCTACTGCTGAGAAAACAGCTGCTAGAATAGCAATGCACATGGCAGGAGATCGAGCTCCTGTAAATGCTAAACTGGTTAAAAGCAGTTACACCACAGGAGCAGCTTCACGTTCTTTCACATCAACTGCCTATGATCCTGTCACCAAAAATGAACTTGAGTATGTTAAGGTTGAAAAGAATCCAAAAAAGAAGGGATATGTTCAGTTGCATACCACCCATGGTGATTTGAATTTGGAGCTTCATTGTGATATAACACCTCGGACATGTGAAAATTTCCTCACACATTGTGAAAATGGTTACTATAATGGTCTTATCTTCCATCGTAGTATCAAAAATTTCATGATTCAAGGAGGTGATCCAACTGGCACAGGAAGTGGAGGGGAGTCCATATGGGGTAAACCTTTCAAGGATGAACTGAATTCAAAACTTATACATTCAGGAAGAGGTGTTGTCAGCATGGCTAATTCTGGGCCTCATACCAATGGGTCCCAATTTTTCATCTTGTACAAGTCCGCACCACATTTAAATTTCAAGCATACGGTATTTGGCATGGTGGTCGGTGGCTTGACCACTCTTTCGGCTATGGAAAAGGTTCCTGTTGATGATGACGATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGGAACCAGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGATTATGATAAGGTGGGATCATGGTATAGCAATCCAGGCACTGGCGTTGCTGGTTCAACTAGCTCTGGTGGTGGCGTTGGCAAGTACCTAAAAGCTCGGACAGCTGGCTTTGCTGATGTGGTTGCAGATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAATGTAGAATTTAAGGATTTCTCTGGGTGGTAGATTCCTGATGAACCTCCCCTTCTCTCAGAAGAAATGGCTAGTGGAAACTTCGGTAGCAGCACTGTGGCATTTCTTCAATCTTCTGCTATGGATTTAAACTAAGATGCTCAAGGTCCACAATTAAGATTCTCTGTAAGCAGATCCGAGTTGAGTAACATGATCCACTCTGGGTGGGTGTTTTGCGGCAAAAGAGTTGCACACTGAGCTATAAGAGGGATGCTTGGGACTTAGGAAATTTGACTGGTTCAATAACTGGAAATTCATGCTTCCATCAGTC]
[+] EMBL AK102337 [CTCGCCGTCAAATCTCCCCTCTTTCTCGCCGCCGGCGAGCAGCAGAAGCAGCGGCACCAGCACCACCGGCTGTAGGCGCGATCTTGTAGGCTCATCGGAGATGGGGAAGAAGCAGCATAGCAAGGACCGGATGTTCATAACGCGGACGGAGTGGGCGACGGAGTGGGGCGGCGCCAAGCAGAAGGAGGCCGGCACGCCCTTCAAGCGCCTTCCCTTCTACTGCTGCGCGCTTACGTTTTTACCATTTGAGGATCCAGTGTGCACAGCAGATGGAAGCGTCTTTGATTTGATGAGCATAATTCCATACATTAAGAAGTTCGGGAAGCACCCAGTAACAGGAACACCACTCAAGCAGGAAGATCTAATGCCTTTAACATTCCACAAGAACTCAGATGGAGAGTTCCAGTGCCCTGTTTTGAATAAAGTTTTTACAGAATTCACGCATATAGTTGCTGTAAAGACTACTGGGAACGTCTTCTGTTATGAGGTGGGGTTTGGCAATCCAAGAACTCAACATCAAGCCAAAGAATTGGAGAGAATTGCTAACTGATGAGCCCTTTACACGAAATGACTTGATAACAATTCAGAATCCAAATGCGGTTGATAGCAAGATCCTAGGTGAATTTGACCATGTCAAGAAAGGCCTCAAACTTGAAGATGAAGAGTTGCAACGAATGAAAAATGATCCAACCTACAACATAAATATTTCTGGTGATCTTAAGCAAATGATTAAGGAACTTGGAACTGAAAAGGGAAAGTTAGCTTTTTTGCATGGTGGGGGAGGGCAGAAAGCTCAAAAGGAAAGAGCTGCTGCACTTGCTGCTATATTGGCAAAAAAGGAGAAGGATGACTCAAAATCTGGCAAAGAACCTAAACCTCATCAGCCTTTCAGTATTGTAGATGCTGCTTCTGCTTCTGTTCATGGCAGAAGTGCAGCCGCAGCAAAGGCTGCTACTGCTGAGAAAACAGCTGCTAGAATAGCAATGCACATGGCAGGAGATCGAGCTCCTGTAAATGCTAAACTGGTTAAAAGCAGTTACACCACAGGAGCAGCTTCACGTTCTTTCACATCAACTGCCTATGATCCTGTCACCAAAAATGAACTTGAGTATGTTAAGGTTGAAAAGAATCCAAAAAAGAAGGGATATGTTCAGTTGCATACCACCCATGGTGATTTGAATTTGGAGCTTCATTGTGATATAACACCTCGGACATGTGAAAATTTCCTCACACATTGTGAAAATGGTTACTATAATGGTCTTATCTTCCATCGTAGTATCAAAAATTTCATGATTCAAGGAGGTGATCCAACTGGCACAGGAAGTGGAGGGGAGTCCATATGGGGTAAACCTTTCAAGGATGAACTGAATTCAAAACTTATACATTCAGGAAGAGGTGTTGTCAGCATGGCTAATTCTGGGCCTCATACCAATGGGTCCCAATTTTTCATCTTGTACAAGTCCGCACCACATTTAAATTTCAAGCATACGGTATTTGGCATGGTGGTCGGTGGCTTGACCACTCTTTCGGCTATGGAAAAGGTTCCTGTTGATGATGACGATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGGAACCAGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGATTATGATAAGGTGGGATCATGGTATAGCAATCCAGGCACTGGCGTTGCTGGTTCAACTAGCTCTGGTGGTGGCGTTGGCAAGTACCTAAAAGCTCGGACAGCTGGCTTTGCTGATGTGGTTGCAGATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAATGTAGAATTTAAGGATTTCTCTGGGTGGTAGATTCCTGATGAACCTCCCCTTCTCTCAGAAGAAATGGCTAGTGGAAACTTCGGTAGCAGCACTGTGGCATTTCTTCAATCTTCTGCTATGGATTTAAACTAAGATGCTCAAGGTCCACAATTAAGATTCTCTGTAAGCAGATCCGAGTTGAGTAACATGATCCACTCTGGGTGGGTGTTTTGCGGCAAAAGAGTTGCACACTGAGCTATAAGAGGGATGCTTGGGACTTAGGAAATTTGACTGGTTCAATAACTGGAAATTCATGCTTCCATCAGT ]
[+] EMBL AU181990 [ TTGAGTATGTTAAGGTTGAAAAGAATCCAAAAAAGAAGGGATATGTTCAGTTGCATACCACCCATGGTGATTTGAATTTGGAGCTTCATTGTGATATAACACCTCGGACATGTGAAAATTTCCTCACACATTGTGAAAATGGTTACTATAATGGTCTTATCTTCCATCGTAGTATCAAAAATTTCATGATTCAAGGAGGTGATCCAACTGGCACAGGAAGTGGAGGGGAGTCCATATGGGGTAAACCTTTCAAGGATGAACTGAATTCAAAACTTATACATTCAGGAAGAGGTGTTGTCAGCATGGCTAATTCTGGGCCTCATACCAATGGGTCCCAATTTTTCATCTTGGACAAGTCCGCACCACATTTAAATTTCAAGCATACGGTATTTGGCATGGTGGTCGGTGGCTTGACCACTCTTTCGGCTATGGAAAA ]
[-] EMBL CB632247 [ TATTTGTGAACCCTTACACGGAACCAGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGATTATGATAAGGTGGGATCATGGTATAGCAATCCAGGCACTGGCGTTGCTGGTTCAACTAGCTCTGGTGGTGGCGTTGGCAAGTACCTAAAAGCTCGGACAGCTGGCTTTGCTGATGTGGTTGCAGATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAATGTAGAATTTAAGGATTTCTCTGGGTGGTAGATTCCTGATGAACCTCCCCTTCTCTCAGAAGAAATGGCTAGTGGAAACTTCGGTAGCAGCACTGTGGCATTTCTTCAATCTTCTGCTATGGATTTAAACTAAGATGCTCAAGGTCCACAATTGAGATTCTCTGTAAGCAGATCCGAGTTGAGTAACATGATCCACTCTGGGTGGGTGTTTTGCGGCAAAAGAGTTGCACACTGAGCTATAAGAGGGATGCTTGGGACTTAGGAAATTTGACTGGTTCAATAACTGGAAATTCATGCTTCCATCAGTC]
consensusID : consensus_9858#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 887 fasta sequence
[CTAATTCTGGGCCTCATACCAACGGGTCCCAATTTTTCATCTTGTACAAGTCCGCACCACATTTAAATTTCAAGCATACGGTATTTGGCATGGTGGTCGGTGGCTTGACCACTCTTTCGGCTATGGAAAAGGTTCCTGTTGATGATGACGATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGGAACCAGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGATTATGATAAGGTGGGATCATGGTATAGCAATCCAGGCACTGGCGTTGCTGGTTCAACTAGCTCTGGTGGTGGCGTTGGCAATTACCTAAAAGCTCGGACAGCTGGCTTTGCTGATGTGGTTGCACATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAATGTTCAACTCAAGGATCTCTCTGGGTGGCACATCCCTGATGCACCTCCCCTCCTCTCACCATAAATGCTTAGCGGAAACATCTGCTGCCACCCTGTGGCTCTTCCCTCACCCCTCGCCTCGCCTCCAACCTCACATGCCCCAGCCTTACAATTCCCATTTCCTGTTTTCCCTCCTCCGTTTCTTTCCACGACCCCCCCCAGAAAGACCGCTCTTCCGCCTCCTCCGTTATTCTCCCCATGTTTCCCCTCTTTTCGTCCCGCTATTTTCTCTTTTTTTCCCTGTCCGCTATTGTTATCACGTCAGTCCCTCCTCACTTCCCTTTTCTACACCCCCTTTACCATATTCTCTTATGCCCTCTTTGTCAGGACCCGTTTCCCCCCCCGCAGTGTTTCATCATTTTCCGGCTTCGTTCTTCCTTACCGCCTCTCTGTCCGTTCTTCTTTTCTCCTCCCTCCC]
[+] EMBL CA757822 [CTAATTCTGGGCCTCATACCAACGGGTCCCAATTTTTCATCTTGTACAAGTCCGCACCACATTTAAATTTCAAGCATACGGTATTTGGCATGGTGGTCGGTGGCTTGACCACTCTTTCGGCTATGGAAAAGGTTCCTGTTGATGATGACGATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGGAACCAGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGATTATGATAAGGTGGGATCATGGTATAGCAATCCAGGCACTGGCGTTGCTGGTTCAACTAGCTCTGGTGGTGGCGTTGGCAATTACCTAAAAGCTCGGACAGCTGGCTTTGCTGATGTGGTTGCACATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAATGTTCAACTCAAGGATCTCTCTGGGTGGCACATCCCTGATGCACCTCCCCTCCTCTCACCATAAATGCTTAGCGGAAACATCTGCTGCCACCCTGTGGCTCTTCCCTCACCCCTCGCCTCGCCTCCAACCTCACATGCCCCAGCCTTACAATTCCCATTTCCTGTTTTCCCTCCTCCGTTTCTTTCCACGACCCCCCCCAGAAAGACCGCTCTTCCGCCTCCTCCGTTATTCTCCCCATGTTTCCCCTCTTTTCGTCCCGCTATTTTCTCTTTTTTTCCCTGTCCGCTATTGTTATCACGTCAGTCCCTCCTCACTTCCCTTTTCTACACCCCCTTTACCATATTCTCTTATGCCCTCTTTGTCAGGACCCGTTTCCCCCCCCGCAGTGTTTCATCATTTTCCGGCTTCGTTCTTCCTTACCGCCTCTCTGTCCGTTCTTCTTTTCTCCTCCCTCCC]
consensusID : consensus_9858#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 853 fasta sequence
[GCTTCTTCTTCCTTCTCTCTCCCCGACCAATCCGACCCAAACGCTCCTCGCCGTCAAATCTCCCCTCTTTCTCGCCGCCGGCGAGCAGCAGAAGCAGCGGCACCAGCACCACCGGCTGTAGGCGCTATCTTGTAGGCTCATCGGAGATGGGGAAGAAGCAGCATAGCAAGGACCGGATGATCATAACGCGGACGGAGTGGGCGACGGAGTGGGGCGGCGCCAAGCAGAAGGAGGCCGGCACGCCCTTCAAGCGCCTTCCCTTCTACTGCTGCGCGCTTACGTTTTTACCATTTGAGGATCCAGTGTGCACAGCAGATGGAAGCGTCTTTGATTTGATGAGCATAATTCCATACATTAAGAAGTTCGGGAAGCACCCAGTAACAGGAACACCACTCAAGCAGGAAGATCTAATGCCTTTAACATTCCACAAGAACTCAGATGGAGAGTTCCAGTGCCCTGTTTTGAATAAAGTTTTTACAGAATTCACGCATATAGTTGCTGTAAAGACTACTGGGAACGTCTTCTGTTATGAGGCAATCCAAGAACTCAACATCAAGCCAAAGAATTGGAGAGAATTGCTAACTGATGAGCCCTTTACACGAAATGACTTGATAACAATTCAGAATCCAAATGCGGTTGATAGCAAGATCCTAGGTGAATTTGACCATGTCAAGAAAGGCCTCAAACTTGAAGATGAAGAGTTGCAACGAATGATAAATGATCCAACCTACAACATAAATATTTCTGGTGATCTTAAGCAAATGATTAAGGAACTTGGAACTGAAAAGGGGAAGTTAGCTTTTTTGCATGGTGGGGGAGGGCAGAAAGCTCAAAAGGAAAGAGCTGCTGCACT]
[+] EMBL CB632246 [GCTTCTTCTTCCTTCTCTCTCCCCGACCAATCCGACCCAAACGCTCCTCGCCGTCAAATCTCCCCTCTTTCTCGCCGCCGGCGAGCAGCAGAAGCAGCGGCACCAGCACCACCGGCTGTAGGCGCTATCTTGTAGGCTCATCGGAGATGGGGAAGAAGCAGCATAGCAAGGACCGGATGATCATAACGCGGACGGAGTGGGCGACGGAGTGGGGCGGCGCCAAGCAGAAGGAGGCCGGCACGCCCTTCAAGCGCCTTCCCTTCTACTGCTGCGCGCTTACGTTTTTACCATTTGAGGATCCAGTGTGCACAGCAGATGGAAGCGTCTTTGATTTGATGAGCATAATTCCATACATTAAGAAGTTCGGGAAGCACCCAGTAACAGGAACACCACTCAAGCAGGAAGATCTAATGCCTTTAACATTCCACAAGAACTCAGATGGAGAGTTCCAGTGCCCTGTTTTGAATAAAGTTTTTACAGAATTCACGCATATAGTTGCTGTAAAGACTACTGGGAACGTCTTCTGTTATGAGGCAATCCAAGAACTCAACATCAAGCCAAAGAATTGGAGAGAATTGCTAACTGATGAGCCCTTTACACGAAATGACTTGATAACAATTCAGAATCCAAATGCGGTTGATAGCAAGATCCTAGGTGAATTTGACCATGTCAAGAAAGGCCTCAAACTTGAAGATGAAGAGTTGCAACGAATGATAAATGATCCAACCTACAACATAAATATTTCTGGTGATCTTAAGCAAATGATTAAGGAACTTGGAACTGAAAAGGGGAAGTT ]
[+] EMBL CB629580 [ CCTCCTTTTCGCCGCCGGCGAGCAGCAGAAGCAGCGGCACCAGCACCACCGGCTGTAGGCGCTATCTTGTAGGCTCATCCGAGATGGGGAAGAAGCAGCATAGCAAGGACCGGATGTTCATAACGCGGACGGAGTGGGCGACGGAGTGGGGCGGCGCCAAGCAGAAGGAGGCCGGCACGCCCTTCAAGCGCCTTCCCTTCTACTGCTGCGCGCTTACGTTTTTACCATTTGAGGATCCAGTGTGCACAGCAGATGGAAGCGTCTTTGATTTGATGAGCATAATTCCATACATTAAGAAGTTCGGGAAGCACCCAGTAACAGGAACACCACTCAAGCAGGAAGATCTAATGCCTTTAACATTCCACAAGAACTCAGATGGAGAGTTCCAGTGCCCTGTTTTGAATAAAGTTTTTACAGAATTCACGCATATAGTTGCTGTAAAGACTACTGGGAACGTCTTCTGTTATGAGGCAATCCAAGAACTCAACATCAAGCCAAAGAATTGGAGAGAATTGCTAACTGATGAGCCCTTTACACGAAATGACTTGATAACAATTCAGAATCCAAATGCGGTTGATAGCAAGATCCTAGGTGAATTTGACCATGTCAAGAAAGGCCTCAAACTTGAAGATGAAGAGTTGCAACGAATGAAAAATGATCCAACCTACAACATAAATATTTCTGGTGATCTTAAGCAAATGATTAAAGAACTTGGAACTGAAAAGGGAAAGTTAGCTTTTTTGCATGGTGGGGGAGGGCAGAAAGCTCAAAAGGAAAGAGCTGCTGCACT]
consensusID : consensus_9858#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 751 fasta sequence
[CCTGTTGATGATGACGATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGGAACCAGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGATTATGATAAGGTGGGATCATGGTATAGCAATCCAGGCACTGGCGTTGCTGGTTCAACTAGCTCTGGTGGTGGCGTTGGCAAGTACCTAAAAGCTCGGACAGCTGGCTTTGCTGATGTGGTTGCAGATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAATGTAGAATTTAAGGATTTCTCTGGGTGGTAGATTCCTGATGAACCTCCCCTTCTCTCAGAAGAAATGGCTAGTGGAAACTTCGGTAGCAGCACTGTGGCATTTCTTCAATCTTCTGCTATGGATTTAAACTAAGATGCTCAAGGTCCACAATTGAGATTCTCTGTAAGCAGATCCGAGTTGAGTAACATGATCCACTCTGGGTGGGTGTTTTGCGGCAAAAGGTATTACTAGATTCTTCTACTGTAAACTTATGTTGTGTCTTGTATAAATCAAAGCCATGTTGTTAGCGGTTTCTTTTATACAACAACAGACTTCCCAAGCAAGTTGGTGTAAGCTAGAAATGGAACTTCAATTCTAAGCCTTTAGCGTTTCTTATGTTAGAGCAAGAGTCAACCCTGATGAAAGTAATGTGCATTTGACTGTCAGAAAGTATTTGTCGTGACTATGAAAAGAG]
[-] EMBL CB629581 [CCTGTTGATGATGACGATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGGAACCAGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGATTATGATAAGGTGGGATCATGGTATAGCAATCCAGGCACTGGCGTTGCTGGTTCAACTAGCTCTGGTGGTGGCGTTGGCAAGTACCTAAAAGCTCGGACAGCTGGCTTTGCTGATGTGGTTGCAGATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAATGTAGAATTTAAGGATTTCTCTGGGTGGTAGATTCCTGATGAACCTCCCCTTCTCTCAGAAGAAATGGCTAGTGGAAACTTCGGTAGCAGCACTGTGGCATTTCTTCAATCTTCTGCTATGGATTTAAACTAAGATGCTCAAGGTCCACAATTGAGATTCTCTGTAAGCAGATCCGAGTTGAGTAACATGATCCACTCTGGGTGGGTGTTTTGCGGCAAAAGGTATTACTAGATTCTTCTACTGTAAACTTATGTTGTGTCTTGTATAAATCAAAGCCATGTTGTTAGCGGTTTCTTTTATACAACAACAGACTTCCCAAGCAAGTTGGTGTAAGCTAGAAATGGAACTTCAATTCTAAGCCTTTAGCGTTTCTTATGTTAGAGCAAGAGTCAACCCTGATGAAAGTAATGTGCATTTGACTGTCAGAAAGTATTTGTCGTGACTATGAAAAGAG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 CTCGCCGTCAAATCTCCCCTCTTTCTCGCCGCCGGCGAGCAGCAGAAGCAGCGGCACCAG 60
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 CACCACCGGCTGTAGGCGCGATCTTGTAGGCTCATCGGAGATGGGGAAGAAGCAGCATAG 120
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 CAAGGACCGGATGTTCATAACGCGGACGGAGTGGGCGACGGAGTGGGGCGGCGCCAAGCA 180
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 GAAGGAGGCCGGCACGCCCTTCAAGCGCCTTCCCTTCTACTGCTGCGCGCTTACGTTTTT 240
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 ACCATTTGAGGATCCAGTGTGCACAGCAGATGGAAGCGTCTTTGATTTGATGAGCATAAT 300
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TCCATACATTAAGAAGTTCGGGAAGCACCCAGTAACAGGAACACCACTCAAGCAGGAAGA 360
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TCTAATGCCTTTAACATTCCACAAGAACTCAGATGGAGAGTTCCAGTGCCCTGTTTTGAA 420
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TAAAGTTTTTACAGAATTCACGCATATAGTTGCTGTAAAGACTACTGGGAACGTCTTCTG 480
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TTATGAGGTGGGGTTTGGCAATCCAAGAACTCAACATCAAGCCAAAGAATTGGAGAGAAT 540
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TGCTAACTGATGAGCCCTTTACACGAAATGACTTGATAACAATTCAGAATCCAAATGCGG 600
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TTGATAGCAAGATCCTAGGTGAATTTGACCATGTCAAGAAAGGCCTCAAACTTGAAGATG 660
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 AAGAGTTGCAACGAATGAAAAATGATCCAACCTACAACATAAATATTTCTGGTGATCTTA 720
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 AGCAAATGATTAAGGAACTTGGAACTGAAAAGGGAAAGTTAGCTTTTTTGCATGGTGGGG 780
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 GAGGGCAGAAAGCTCAAAAGGAAAGAGCTGCTGCACTTGCTGCTATATTGGCAAAAAAGG 840
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 AGAAGGATGACTCAAAATCTGGCAAAGAACCTAAACCTCATCAGCCTTTCAGTATTGTAG 900
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 ATGCTGCTTCTGCTTCTGTTCATGGCAGAAGTGCAGCCGCAGCAAAGGCTGCTACTGCTG 960
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 AGAAAACAGCTGCTAGAATAGCAATGCACATGGCAGGAGATCGAGCTCCTGTAAATGCTA 1020
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 AACTGGTTAAAAGCAGTTACACCACAGGAGCAGCTTCACGTTCTTTCACATCAACTGCCT 1080
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 ATGATCCTGTCACCAAAAATGAACTTGAGTATGTTAAGGTTGAAAAGAATCCAAAAAAGA 1140
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 AGGGATATGTTCAGTTGCATACCACCCATGGTGATTTGAATTTGGAGCTTCATTGTGATA 1200
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TAACACCTCGGACATGTGAAAATTTCCTCACACATTGTGAAAATGGTTACTATAATGGTC 1260
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TTATCTTCCATCGTAGTATCAAAAATTTCATGATTCAAGGAGGTGATCCAACTGGCACAG 1320
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------------------------------------
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 GAAGTGGAGGGGAGTCCATATGGGGTAAACCTTTCAAGGATGAACTGAATTCAAAACTTA 1380
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 ------------------------------CTAATTCTGGGCCTCATACCAACGGGTCCC 30
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 TACATTCAGGAAGAGGTGTTGTCAGCATGGCTAATTCTGGGCCTCATACCAATGGGTCCC 1440
consensus_9858#2 ------------------------------------------------------------
consensus_9858#1 AATTTTTCATCTTGTACAAGTCCGCACCACATTTAAATTTCAAGCATACGGTATTTGGCA 90
consensus_9858#3 ------------------------------------------------------------
consensus_9858#0 AATTTTTCATCTTGTACAAGTCCGCACCACATTTAAATTTCAAGCATACGGTATTTGGCA 1500
consensus_9858#2 ----------------------------------------GCTTCTTCTTCCTTCTCTCT 20
consensus_9858#1 TGGTGGTCGGTGGCTTGACCACTCTTTCGGCTATGGAAAAGGTTCCTGTTGATGATGACG 150
consensus_9858#3 --------------------------------------------CCTGTTGATGATGACG 16
consensus_9858#0 TGGTGGTCGGTGGCTTGACCACTCTTTCGGCTATGGAAAAGGTTCCTGTTGATGATGACG 1560
consensus_9858#2 CCCCGACCAATCCGACCCAAACGCTCCTCGCCGTCAAATCTCCCCTCTTTCTCGCCGCCG 80
* ** * * **
consensus_9858#1 ATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGG 210
consensus_9858#3 ATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGG 76
consensus_9858#0 ATCGACCATTGGAGGAAATAAAGATATTAAAAGTAAGTGTATTTGTGAACCCTTACACGG 1620
consensus_9858#2 G-CGAGCAGCAGAAGCAGCGGCACCAGCACCACCGGCTGTAGGCGCTATCTTGTAGGCTC 139
*** ** ** * * * * * **** * * * ** *
consensus_9858#1 AACC-AGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGAT 269
consensus_9858#3 AACC-AGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGAT 135
consensus_9858#0 AACC-AGATGAAGAAGAAGAAGAAAAGGCAAAGGAAGAGGAGAAGAAAAAGGATGAGGAT 1679
consensus_9858#2 ATCGGAGATGGGGAAGAAGCAGCATAGCAAGGACCGGATGATCATAACGCGGACGGAGTG 199
* * ***** ******* ** * ** * ** ** * ** *** * *
consensus_9858#1 TATGATAAGGTGGGATCATGGTATAGCAATCCAGGC--ACTGGCGTTGCTGGTTCAACTA 327
consensus_9858#3 TATGATAAGGTGGGATCATGGTATAGCAATCCAGGC--ACTGGCGTTGCTGGTTCAACTA 193
consensus_9858#0 TATGATAAGGTGGGATCATGGTATAGCAATCCAGGC--ACTGGCGTTGCTGGTTCAACTA 1737
consensus_9858#2 GGCGACGGAGTGGGGCGGCGCCAAGCAGAAGGAGGCCGGCACGCCCTTCAAGCGCCTTCC 259
** ***** * * * **** * ** * * * *
consensus_9858#1 GCTCTGGTGGTG-GCGTTGGCA-----ATTACCTAAAAGCTCGG-----ACAGCTG---- 372
consensus_9858#3 GCTCTGGTGGTG-GCGTTGGCA-----AGTACCTAAAAGCTCGG-----ACAGCTG---- 238
consensus_9858#0 GCTCTGGTGGTG-GCGTTGGCA-----AGTACCTAAAAGCTCGG-----ACAGCTG---- 1782
consensus_9858#2 CTTCTACTGCTGCGCGCTTACGTTTTTACCATTTGAGGATCCAGTGTGCACAGCAGATGG 319
*** ** ** *** * * * * * * * * ***** *
consensus_9858#1 --GCTTTGCTGATGTGGTTGCACATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAA 430
consensus_9858#3 --GCTTTGCTGATGTGGTTGCAGATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAA 296
consensus_9858#0 --GCTTTGCTGATGTGGTTGCAGATGATTCAAACAAGAAAAGAAAAGCGAGTGTGTCTAA 1840
consensus_9858#2 AAGCGTCTTTGATTTGAT-GAGCATAATTCCATACATTAAGAAGTTCGGGAAGCACCCAG 378
** * **** ** * * ** **** * * ** * * * * *
consensus_9858#1 TGTTCAACTCAAGGATCTCTCTGGGTGGCACATCCCTGATGCACCTCCCCTCCTCTCACC 490
consensus_9858#3 TGTAGAATTTAAGGATTTCTCTGGGTGGTAGATTCCTGATGAACCTCCCCTTCTCTCAGA 356
consensus_9858#0 TGTAGAATTTAAGGATTTCTCTGGGTGGTAGATTCCTGATGAACCTCCCCTTCTCTCAGA 1900
consensus_9858#2 T----AACAGGAACACCACTCAAGCAGGAAGAT--CTAATGCCTTTAACATTC---CACA 429
* ** * * *** * ** * ** ** *** * * * * **
consensus_9858#1 ATAAATGCTTAGCGGAAACATCTGCTGCCACCCTGTGGCTCTTCCCTCACCCCTCGCCTC 550
consensus_9858#3 AGAAATGGCTAGTGGAAACTTCGGTAGCAGCACTGTGGCATTTCTTCAATCTTCTGCTAT 416
consensus_9858#0 AGAAATGGCTAGTGGAAACTTCGGTAGCAGCACTGTGGCATTTCTTCAATCTTCTGCTAT 1960
consensus_9858#2 AGAACT--CAGATGGAGAGTTCCAGTGCCCTGTTTTGA------ATAAAGTTTTTACAGA 481
* ** * *** * ** ** * ** * *
consensus_9858#1 GCCTCCAACCTCACATGCC-CCAGCCTTACAATTCCCATTTCCTGTTTTCCCTC--CTCC 607
consensus_9858#3 GGATTTAAACTAAGATGCT-CAAGGTCCACAATTGAGATTCTCTGTAAGCAGAT--CCGA 473
consensus_9858#0 GGATTTAAACTAAGATGCT-CAAGGTCCACAATTAAGATTCTCTGTAAGCAGAT--CCGA 2017
consensus_9858#2 ATTCACGCATATAGTTGCTGTAAAGACTACTGGGAACGTCTTCTGTTATGAGGCAATCCA 541
* *** * ** * ****
consensus_9858#1 GTTTCTTTCCACGACCCCCCCCAGAAAGACCGCTCTTCCG-CC-----TCCTCCGTTATT 661
consensus_9858#3 GTTGAGTAACATGATCCACTCTGGGTGGGT-GTTTTGCGG-CAAAAGGTATTACTAGATT 531
consensus_9858#0 GTTGAGTAACATGATCCACTCTGGGTGGGT-GTTTTGCGG-CAAAAG--AGTTGCACACT 2073
consensus_9858#2 AGAACTCAACATCAAGCCAAAGAATTGGAGAGAATTGCTAACTGATGAGCCCTTTACACG 601
** * * * * * * * *
consensus_9858#1 CTCCCCATGTTTCCCCTCTTTTCGTCCCG-C-TATTTTCTCTTTTTTTCCCTGTCCGCTA 719
consensus_9858#3 CTTCTACTGTAAACTTATGTTGTGTCTTG-TATAAATCAAAGCCATGTTGTTAGCGGTTT 590
consensus_9858#0 GAGCTATAAGAGGGATGCTTGGGACTTAG-G--AAATTTGACTGGTTCAATAACTGGAAA 2130
consensus_9858#2 AAATGACTTGATAACAATTCAGAATCCAAATGCGGTTGATAGCAAGATCCTAGGTGAATT 661
*
consensus_9858#1 TTGTTATC--ACGTCAGTCCCTCCTCAC-------------TTCCCTTTTCTACACCC-- 762
consensus_9858#3 CTTTTATACAACAACAGACTTCCCAAGCAA---------GTTGGTGTAAGCTAGAAATGG 641
consensus_9858#0 TTCATGCTT-CCATCAGTC----------------------------------------- 2148
consensus_9858#2 TGACCATGTCAAGAAAGGCCTCAAACTTGAAGATGAAGAGTTGCAACGAATGATAAATGA 721
** *
consensus_9858#1 -----CCTTTACCATATTCTCTTA-TGCCCTCTTTGTCAGGACCCGTTTCCCCCC----C 812
consensus_9858#3 ---AACTTCAATTCTAAGCCTTTAGCGTTTCTTATGTTAGAGCAAGAGTCAACCC----T 694
consensus_9858#0 ------------------------------------------------------------
consensus_9858#2 TCCAACCTACAACATAAATATTTCTGGTGATCTTAAGCAAATGATTAAGGAACTTGGAAC 781
consensus_9858#1 CGC-AGTGTTTCAT-CATTTTCCGGCTTCGTTCTTCCTTACCGCCTCTCTGTCCGTTCTT 870
consensus_9858#3 GATGAAAGTAATGTGCATTTGACTG-TCAGAAAGTATTTGTCGTGACTATGAAAAGAG-- 751
consensus_9858#0 ------------------------------------------------------------
consensus_9858#2 TGAAAAGGGGAAGTTAGCTTTTTTGCATGGTGGGGGAGGGCAGAAAGCTCAAAAGGAAAG 841
consensus_9858#1 CTTTTCTCCTCCCTCCC 887
consensus_9858#3 -----------------
consensus_9858#0 -----------------
consensus_9858#2 AGCTGCTGCACT----- 853
|
| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||