These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9860#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 860 fasta sequence [GCAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATGAGATCTCCCCAAAAAAAAGG] [+] EMBL AK070467 [GCAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATG ] [+] EMBL AK104410 [ CAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATG ] [+] EMBL AK104671 [ AAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATGAG ] [+] EMBL CA754045 [ AGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCAC ACTAAGAAGA AACTACTTCTCTGTATAAaa ] [+] EMBL CB682460 [ ACCATGGCTGCTACTTCCATCCTGTTCTTCTTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACCACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTG ] [-] EMBL CB682461 [ CAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCGTGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAGTGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCGCCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGACCCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCCGTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCCGCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGCCGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAAGAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTTGAACATGTCTCTGTGTTCATGTACGTGTTGGTATATGCATAGCTTGAACATGTCTCTTTGTGTTCATATACGTGTTGGTATGTATGCATAGCTTGAACATGTCTCTGTGTTGGTATGCCAACATGCATCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAGAGATGAGATCTCCCCAAAAAAAAGG] consensusID : consensus_9860#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 176 fasta sequence [CATGTACCGTGTTGGTATATGCACTAGCTTGAACCACTGTCTCTTTGTGTTCATATACCGTGTTGGTATGTATGCACTAGCTTGAACCACTGTCTCTGTGTTGGTATGCCCACCAATGCACTCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAAAAAAAAA] [+] EMBL BI810977 [CATGTACCGTGTTGGTATATGCACTAGCTTGAACCACTGTCTCTTTGTGTTCATATACCGTGTTGGTATGTATGCACTAGCTTGAACCACTGTCTCTGTGTTGGTATGCCCACCAATGCACTCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATAAATAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_9860#0 GCAAGCAAGACGTCCATGAAGATGAAGCGCACCATGGCTGCTACTTCCATCCTGTTCTTC 60 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 TTCCTCGCCGGCCTCGCCGCCGCCCACGGCAGCACAGCGGACGACACCACGACCACCACC 120 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 ACCAACACCATACGCCTCCCGATCGACGGAGCAGTGGCGGCGCGAAGGAGGACGAGGCCG 180 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 TGGAAGTGCTGCGACAACATCGTGAGGCTGCCGGAGAGGATCAACCCGCCGTTCTGGCAG 240 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 TGCGACGACGAGCTGGAGCCCGGGCAGTGCTTCCGCCAGTGCGAGGCGTGCCGGGATCCG 300 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 CCGGGGCGGCCGTTCCCCGGCCGGCCGCTCATCTGCGACGACGTCTTCTGGGGCGACGAC 360 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 CCGGGCACCTCGTGCGCGCCGTCGTCGGAGTGGCCGTGGGGCCCGTGCTGCGACATCGCC 420 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 GTCTGCACCAAGTCGCTCCCTCCCATCTGCCACTGCTCCGACGAGGTGGAGTCGTGCGCC 480 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 GCCGCGTGCGGGCAGTGCGAGATGGTGGACTCGTGGTCGTGGCGCCCTCTCTTCGTCTGC 540 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 CGTGACTCCTTCACCGGGGACCCAGGCCCCAGGTGCACACCTGAAATGCACAACTAAGAA 600 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 GAGAACTACTTCTCTGTATAACAAGCAGAGAGGCTCATCGTACGTATTCTCTGCTAGCTT 660 consensus_9860#1 ------------------------------------------------------------ consensus_9860#0 GAACATGTCTCTGTGTTCATGTAC-GTGTTGGTATATGCA-TAGCTTGAACA--TGTCTC 716 consensus_9860#1 -----------------CATGTACCGTGTTGGTATATGCACTAGCTTGAACCACTGTCTC 43 ******* *************** ********** ****** consensus_9860#0 TTTGTGTTCATATAC-GTGTTGGTATGTATGCA-TAGCTTGAACA--TGTCTCTGTGTTG 772 consensus_9860#1 TTTGTGTTCATATACCGTGTTGGTATGTATGCACTAGCTTGAACCACTGTCTCTGTGTTG 103 *************** ***************** ********** ************* consensus_9860#0 GTATGCCAAC--ATGCA-TCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATA 829 consensus_9860#1 GTATGCCCACCAATGCACTCTTGTCTTTGTGATGATGCATAAATAAATGAATAAAAGATA 163 ******* ** ***** ****************************************** consensus_9860#0 AATAAGAGATGAGATCTCCCCAAAAAAAAGG 860 consensus_9860#1 AATAAAAAAAAAA------------------ 176 ***** * * * |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||