cluster # 9864

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Oryza sativa
cluster # 9864 cluster # 9864 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9864#0 length = 549 sequences # 2

consensus_9864#1 length = 519 sequences # 4
consensus_9864#2 length = 474 sequences # 1

consensusID : consensus_9864#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 549
fasta sequence

                              [TTTTTTTTTTTTTCAAGGATTAACCACTGCTCAATATACTTATTGGAGAATATTTAAAATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAATTACAGATCAACTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCACTGCATGCACATGAAACGTTGTATATTAGCAAAGCATAGTTATTTCAAACAATACTGATGCCAGAAGGGCCATTTTTACCCCGTCTACTAGCAAGTACTTGGTCATGTAAGTTTCGCATATCTATTCTACTCCT]

[+] EMBL CF337647             [TTTTTTTTTTTTTCAAGGATTAACCACTGCTCAATATACTTATTGGAGAATATTTAAAATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAATTACAGATCAACTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCACTGCATGCACATGAAACGTTGTATATTAGCAAAGCATAGTTATTTCAAACAATACTGATGCCAGAAGGGCCATTTTTACCCCGTCTACTAGCAAGTACTTGGTCATGTAAGTTTCGCATATCTATTCTACTCCT]
[-] EMBL CF337646             [                                   ATAC TATTGGAGAATATTTAAAATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAATTACAGATCAACTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCACTGCATGCACATGAAACGTTGTATATTAGCAAAGCATAGTTATTTCAAACAATACTGATGCCAGAAGGGCCATTTTTACCCCGTCTACTAGCAAGTACTTGGTCATGTAAGTTTC                   ]




>consensus_9864#0
TTTTTTTTTTTTTCAAGGATTAACCACTGCTCAATATACTTATTGGAGAATATTTAAAAT
ATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAATT
ACAGATCAACTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAA
AGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAA
AAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATC
AAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCC
CACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCACTGCA
TGCACATGAAACGTTGTATATTAGCAAAGCATAGTTATTTCAAACAATACTGATGCCAGA
AGGGCCATTTTTACCCCGTCTACTAGCAAGTACTTGGTCATGTAAGTTTCGCATATCTAT
TCTACTCCT

consensusID : consensus_9864#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 519
fasta sequence

                              [CCACTGCTCAATATACTTATTGGAGAATATTTAAAATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAATTACAGATCAACTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCATTGGACACGGTGCAGTCCTCCAGCTGCTTCTCCCCGCCGCCGACCCGCTCCATCTCCTTCCTCCTTCGTCCTTCCCTCCCTCCACGCGGCGCGGTTGCAGAGTGCGGCGGCGGTGGCGGCGGCGGCG]

[-] EMBL AK102011             [CCACTGCTCAATATACTTATTGGAGAATATTTAAAATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAATTACAGATCAACTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCATTGGACACGGTGCAGTCCTCCAGCTGCTTCTCCCCGCCGCCGACCCGCTCCATCTCCTTCCTCCTTCGTCCTTCCCTCCCTCCACGCGGCGCGGTTGCAGAGTGCGGCGGCGGTGGCGGCG      ]
[-] EMBL BF430716             [ CACTGCTCAATATACTTATTGGAGAATATTTAAAATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAATTACAGATCAACTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCATTGGACACGGTGCAGTCCTCCAGCTGCTTCTCCCCGCCGCCGACCCGCTCCATCTCCTTCCTCCTTCGTCCTTCCCTCCCTCCACGCGGCGCGGTTGCAGAGT                        ]
[-] EMBL AU091781             [         ttttTACTTATTGGAGAATATTTAAAATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAATTACAGATCAACTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCATTGGACACGGTGCAGTCCTCCAGCTGCTTCTCCCCGCCGCCGACCCGCTCCATCTCCTTCCTCCTTCGTCCTTCCCTCCCTCCACGCGGCGCGGTTGCAGAGTGCGGCGGCGGTGGCGGCGGCGGC ]
[-] EMBL AU091780             [                                                                                                                              ACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCATCTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGAAGAACCAGGTGCCGAGAGCATTGGACACGGTGCAGTCCTCCAGCTGCTTCTCCCCGCCGCCGACCCGCTCCATCTCCTTCCTCCTTCGTCCTTCCCTCCCTCCACGCGGCGCGGTTGCAGAGTGCGGCGGCGGTGGCGGCGGCGGCG]




>consensus_9864#1
CCACTGCTCAATATACTTATTGGAGAATATTTAAAATATCAAGATTTCCGTATTTTGGAT
GGACAAATTTGTACAAGAGCAGAAGATCATGCCAATTACAGATCAACTAGTAAGTTACGA
AAAACAACAGCTGCATTTTGCTTGTCCTAATAATCAAAGAACTTGATCAGTTTTCACCAT
CTGCTGAAGCATTGGCAGAAAGGTTTTGAGCTTCTAAAAGCTTCATCTGCCGCTCAGCAT
GCTCCCGCTCGCATTGGCTAATGCCCATGATGATATCAAGCATAGTTCCAGTAGTGCCAA
AGAAAACCAGTGGTGCCAAGGATTTCTTCTTTATCCCCACAGGAATAGCAACAAGAGCAC
CAGCAACTGAGAAGAACCAGGTGCCGAGAGCATTGGACACGGTGCAGTCCTCCAGCTGCT
TCTCCCCGCCGCCGACCCGCTCCATCTCCTTCCTCCTTCGTCCTTCCCTCCCTCCACGCG
GCGCGGTTGCAGAGTGCGGCGGCGGTGGCGGCGGCGGCG

consensusID : consensus_9864#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 474
fasta sequence

                              [ACCACACCTCACCGCCGCCACCGCCGCCGCACTCTGCAACCGCGCCGCGTGGAGGGAGGGAAGGACGAAGGAGGAAGGAGATGGAGCGGGTCGGCGGCGGGGAGAAGCAGCTGGAGGACTGCACCGTGTCCAAGTCAGTCACTGGATTCTCGCGGCTTTGCAATCGCGATCTGCCTAACTGTGTCGTGGCTTAGGTTTAGGTGGCTCGCGAATCTCTTGTGGTTATTGCTAGATTTCAACAAATCGTGGGACTCTCTTGTCTCTTGCATCCTGTGAGGTTTTGGTTCGAGATTTCCTTGTGATTATCCTCCCTTGCGTTGATGGTTAAGAGCCCCCTTTTGGGGCTAAATACAATGATTGACAGAAAAGGTTGCATTTGGAGGAATAAGTAGAAGGATTTCAATTCTTCAGTGAGCCATTCTTTCTATGGGGAGTGCATACTTAAGATCATAATTTTGGATGTCAATTATATGT]

[+] EMBL AU070934             [ACCACACCTCACCGCCGCCACCGCCGCCGCACTCTGCAACCGCGCCGCGTGGAGGGAGGGAAGGACGAAGGAGGAAGGAGATGGAGCGGGTCGGCGGCGGGGAGAAGCAGCTGGAGGACTGCACCGTGTCCAAGTCAGTCACTGGATTCTCGCGGCTTTGCAATCGCGATCTGCCTAACTGTGTCGTGGCTTAGGTTTAGGTGGCTCGCGAATCTCTTGTGGTTATTGCTAGATTTCAACAAATCGTGGGACTCTCTTGTCTCTTGCATCCTGTGAGGTTTTGGTTCGAGATTTCCTTGTGATTATCCTCCCTTGCGTTGATGGTTAAGAGCCCCCTTTTGGGGCTAAATACAATGATTGACAGAAAAGGTTGCATTTGGAGGAATAAGTAGAAGGATTTCAATTCTTCAGTGAGCCATTCTTTCTATGGGGAGTGCATACTTAAGATCATAATTTTGGATGTCAATTATATGT]




>consensus_9864#2
ACCACACCTCACCGCCGCCACCGCCGCCGCACTCTGCAACCGCGCCGCGTGGAGGGAGGG
AAGGACGAAGGAGGAAGGAGATGGAGCGGGTCGGCGGCGGGGAGAAGCAGCTGGAGGACT
GCACCGTGTCCAAGTCAGTCACTGGATTCTCGCGGCTTTGCAATCGCGATCTGCCTAACT
GTGTCGTGGCTTAGGTTTAGGTGGCTCGCGAATCTCTTGTGGTTATTGCTAGATTTCAAC
AAATCGTGGGACTCTCTTGTCTCTTGCATCCTGTGAGGTTTTGGTTCGAGATTTCCTTGT
GATTATCCTCCCTTGCGTTGATGGTTAAGAGCCCCCTTTTGGGGCTAAATACAATGATTG
ACAGAAAAGGTTGCATTTGGAGGAATAAGTAGAAGGATTTCAATTCTTCAGTGAGCCATT
CTTTCTATGGGGAGTGCATACTTAAGATCATAATTTTGGATGTCAATTATATGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9864#0      TTTTTTTTTTTTTCAAGGATTAACCACTGCTCAATATACTTATTGGAGAATATTTAA--A 58
consensus_9864#1      -----------------------CCACTGCTCAATATACTTATTGGAGAATATTTAA--A 35
consensus_9864#2      ----------------------------------------------ACCACACCTCACCG 14
                                                                    *  * *  * *   

consensus_9864#0      ATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAA 118
consensus_9864#1      ATATCAAGATTTCCGTATTTTGGATGGACAAATTTGTACAAGAGCAGAAGATCATGCCAA 95
consensus_9864#2      CCGCCACCGCCGCCGCACTCTGCAACCGCGCCGCGTGGAGGGAGGGAAGGACGAAGGAGG 74
                          **      *** * * ** *    *            ***   * **  * *    

consensus_9864#0      TTACAGATCAA-CTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAAT 177
consensus_9864#1      TTACAGATCAA-CTAGTAAGTTACGAAAAACAACAGCTGCATTTTGCTTGTCCTAATAAT 154
consensus_9864#2      AAGGAGATGGAGCGGGTCGGCGGCGGGGAGAAGCAGCTGGAG---GACTGCACCG-TGTC 130
                          ****  * *  **  *   **   *  * ****** *    *  **  *   *   

consensus_9864#0      CAAAGAACTTGATCAGTTTTCACCA-TCTGCTGAAGC-ATTGGCAGAAAGGTTTTGAGCT 235
consensus_9864#1      CAAAGAACTTGATCAGTTTTCACCA-TCTGCTGAAGC-ATTGGCAGAAAGGTTTTGAGCT 212
consensus_9864#2      CAAGTCAGTCACTGGATTCTCGCGGCTTTGCAATCGCGATCTGCCTAACTGTGTCGTGGC 190
                      ***   * *   *   ** ** *   * ***    ** **  **  **  ** * * *  

consensus_9864#0      TCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATG 295
consensus_9864#1      TCTAAAAGCTTCATCTGCCGCTCAGCATGCTCCCGCTCGCATTGGCTAATGCCCATGATG 272
consensus_9864#2      TT----AGGTTTAGGTG--GCTCGCGAATCTCTTGTGGTTATTGCTAGATTTCAACAAAT 244
                      *     ** ** *  **  ****   *  ***  *     ****    **  * *  *  

consensus_9864#0      ATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCT-- 353
consensus_9864#1      ATATCAAGCATAGTTCCAGTAGTGCCAAAGAAAACCAGTGGTGCCAAGGATTTCTTCT-- 330
consensus_9864#2      CGTGGGACTCTCTTGTCTCTTGCATCCTGTGAGGTTT-TGGT-TCGAGATTTCCTTGTGA 302
                            *   *  *  *  * *   *     *      ****  * **  ** *** *  

consensus_9864#0      TTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGA--AGAACCAGGTGCCGAG 411
consensus_9864#1      TTATCCCCACAGGAATAGCAACAAGAGCACCAGCAACTGAGA--AGAACCAGGTGCCGAG 388
consensus_9864#2      TTATCCTCCCTTGCGTTGATGGTTAAGAGCCCCCTTTTGGGGCTAAATACAATGATTGAC 362
                      ****** * *  *  * *       **  **  *   ** *   * *  **      ** 

consensus_9864#0      AGCACTGCATGCACATGAAACGTTGTATATTAGCAAAGCATAGTTATTTCAAACAATACT 471
consensus_9864#1      AGCATTGGACACGGTGCAGTCCTCCAGCTGCTTCTCCCCGCCGCCGACCCGCTCCATCTC 448
consensus_9864#2      AGAAAAGGTTGCATTTGGAGGAATAAGTAGAAGGATTTCAATTCTTCAGTGAGCCATTCT 422
                      ** *  *    *                          *              * **   

consensus_9864#0      GATGCCAGAAGGGCCATTTTTACCCCGTCTACTAGCAAGTACTTGGTCATGTAAGTTTCG 531
consensus_9864#1      CTTCCTCCTTCGTCCTTCCCTCCCTCCACGCGGCGCGGTTGCAGAGTGCGGCGGCGGTGG 508
consensus_9864#2      TTCTATGGGGAGTGCATACTTAAGATCATAATTTTGGATGTCAATTATATGT-------- 474
                                 *  * *   *                    *        *         

consensus_9864#0      CATATCTATTCTACTCCT 549
consensus_9864#1      CGGCGGCGGCG------- 519
consensus_9864#2      ------------------