These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_987#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 428 fasta sequence [AACCCCGTTTTGCTTCGTCCAGAACGGCAGAGTATAATAGTTCGAGTTGTGTGTGATGTGTCAGAACTCAGAATAAAAATGCACGCCGATGCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAAAACTGCGTAGCCAACTGTCAGTGAGACGTTAACAAAATGATGATGGGATCTCTGCAATGTATACTGAGCAAAATTGTGCTTAGACTATGTGTGATGAAAATATGTCCCCCTTCTGCTGTAAAATCCCAATGCCAAAGATTTGGTGNCCAGGTATATNCCANCTCAAAANCGATCTTTAGTAATCTGAATTTTCGGGGATTTCTCCTCTCTCTAAAAAA] [+] EMBL AU173489 [AACCCCGTTTTGCTTCGTCCAGAACGGCAGAGTATAATAGTTCGAGTTGTGTGTGATGTGTCAGAACTCAGAATAAAAATGCACGCCGATGCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAAAACTGCGTAGCCAACTGTCAGTGAGACGTTAACAAAATGATGATGGGATCTCTGCAATGTATACTGAGCAAAATTGTGCTTAGACTATGTGTGATGAAAATATGTCCCCCTTCTGCTGTAAAATCCCAATGCCAAAGATTTGGTGNCCAGGTATATNCCANCTCAAAANCGATCTTTAGTAATCTGAATTTTCGGGGATTTCTCCTCTCTCTAAAAAA] consensusID : consensus_987#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 189 fasta sequence [GCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] [+] EMBL AU095383 [GCACCGGGGTGATGGGCATCTTGCTGTGCGAATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCGACATTGATAATTGAGAAAAATTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_987#0 AACCCCGTTTTGCTTCGTCCAGAACGGCAGAGTATAATAGTTCGAGTTGTGTGTGATGTG 60 consensus_987#1 ------------------------------------------------------------ consensus_987#0 TCAGAACTCAGAATAAAAATGCACGCCGATGCACCGGGGTGATGGGCATCTTGCTGTGCG 120 consensus_987#1 ------------------------------GCACCGGGGTGATGGGCATCTTGCTGTGCG 30 ****************************** consensus_987#0 AATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCG 180 consensus_987#1 AATGGTGTAAGGTTTTATTTAATTTCCTATTTGACAAATTGTGTAATTTTCCCTGTTCCG 90 ************************************************************ consensus_987#0 ACATTGATAATTGAGAAAAATTGTCCCAAAAACTGCGTAGCCAACTGTCAGTGAGACGTT 240 consensus_987#1 ACATTGATAATTGAGAAAAATTGTCCCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 150 ******************************** * ** * * * consensus_987#0 AACAAAATGATGATGGGATCTCTGCAATGTATACTGAGCAAAATTGTGCTTAGACTATGT 300 consensus_987#1 AAAAAAAAAAAAAAAAAAA----AAAAAAAAAAAAAAAAAAAA----------------- 189 ** **** * * * ** * * * **** consensus_987#0 GTGATGAAAATATGTCCCCCTTCTGCTGTAAAATCCCAATGCCAAAGATTTGGTGNCCAG 360 consensus_987#1 ------------------------------------------------------------ consensus_987#0 GTATATNCCANCTCAAAANCGATCTTTAGTAATCTGAATTTTCGGGGATTTCTCCTCTCT 420 consensus_987#1 ------------------------------------------------------------ consensus_987#0 CTAAAAAA 428 consensus_987#1 -------- |
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||