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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9882#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 831 fasta sequence
[TCCTAAAGGAATAAGCTTGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGAGACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCA-CCTGAGGTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGGGCTGCACAGTCCTAGAGATGTTGACACGTCAACTTCCCTATCCTGGTCTGGAATGGACACAAGCTTTATACAGGATTGGGAAGGGGGAA]
[+] EMBL BI305358 [TCCTAAAGGAATAAGCTTGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGAGACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCA CCTGAGGTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGGGCTGCACAGTCCTAGAGATGTTGACACGTCAACTTCCCTATCCTGGTCTGGAATG ]
[+] EMBL BI305205 [ GCGGCCGCGGTGTTGACGCTGGAGGAGCT AGGCTAGGGGAGACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCA CCTGAGGTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGGGCTGC ]
[+] EMBL BI305201 [ GGCCGCGGTGTTGACGCTGGA GAGCTCA GCTAGGGGAGACGTCCGA GAATT ACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCATTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACGAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCA CCTGAGGTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGGGCTGCACAGTCCTAGAGATGTTGACACGTCAACTTCCCTATCCTGGTCTGGAATGGACACAAGCTTTATACAGGATTGGGAAGGGGGAA]
[+] EMBL BI305269 [ GCTGGAGGAGCTCAGGCTAGGGGAGACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCATGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGGAGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTTGAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATCTTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGAGATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAACGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCCGTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCGTGCAAAGGAACTGTTTATTGGATGGCACCCTGA GTTGTCAATCCCAAGACAACATATGGACCTGAAGCTGATATATGGAGTCTGG ]
[+] EMBL BI305186 [ TCTTCGCTGTCGACGACGAACGATGACGAAACGTCGAGCACAACCACCGAGTCCGTGTTCTACATCTCGCCGAATGGGAGGTTTAGGAGGAAGATCCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTGGGACAGTCTTCGAGGGGATCAGCGACGAGGGTGTGTGCTTTGCTGGCAAAGAGGGCTGCTTGTGTGATCAAGGGAG ]
consensusID : consensus_9882#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 246 fasta sequence
[TAAATTACCTCACTAAGGGAATAGCTGGGCGCCGCGGTCGTGCTCAAGCCG-CGCC-NCGATGGTACGGCCGGCGGTCTGCGTGGTGGAGTCCACGTGGGATATCTTGCGGTCGTTCGCGCCGGAGGAGGATAGCCATGCTCACGCCCCGGCGAGCAGATCTGGTGGTGATTCCGCATGCCAGGACGCGGGTGAGGAGGAGGATGATGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGA]
[+] EMBL CB967218 [TAAATTACCTCACTAAGGGAATAGCTGGGCGCCGCGGTCGTGCTCAAGCCG CGCC NCGATGGTACGGCCGGCGGTCTGCGTGGTGGAGTCCACGTGGGATATCTTGCGGTCGTTCGCGCCGGAGGAGGATAGCCATGCTCACGCCCCGGCGAGCAGATCTGGTGGTGATTCCGCATGCCAGGACGCGGGTGAGGAGGAGGATGATGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGA]
[+] EMBL BI306322 [ TGCTCAAGCCGCCGCCGTCGATGGTACGGCCGGCGGTCTGCGTGGTGGAGTCCACGTGGGATATCTTGCGGTCGTTCGCGCCGGAGGAGGATAGCCATGCTCACGCCCCGGCGAGCAGATCTGGTGGTGATTCCGCATGCCAGGACGCGGGTGAGGAGGAGGATGATGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGG ]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9882#0 TCCTAAAGGAATAAGCTTGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGAG 60
consensus_9882#1 -------------------------------------TAAATTACCTCA--CTAAGGGAA 21
* * * **** *** ****
consensus_9882#0 ACGTCCGAGGAATTCACGGGCACGTCTTCGCTGTCGACGACGAACGATGACGAAACGTCG 120
consensus_9882#1 TAGCTGGGCG---CCGCGGTCGTGCTCAAGCCGC--GCCNCGA-TGGT-ACGGC-CGGCG 73
* * * * *** * * ** * * *** * * *** ** **
consensus_9882#0 AGCACAACCACCGAGTCCATGTTCTACATCTCGCCGA-ATGGGAGGTTTAGGAGGAAGAT 179
consensus_9882#1 GTCTGCGTGGTGGAGTCCACGTGGGATATCTTGCGGTCGTTCGCGCCGGAGGAGGATAGC 133
* ******* ** * **** ** * * * * *******
consensus_9882#0 CCGGTCGTGGAACCGGGGGATGCTCCTGGGAAGTGGCTCGTTTG--GGACAGTCTTCGAG 237
consensus_9882#1 CATGCTCACGCCCCGGCGAGCAGATCTGGTGGTGATTCCGCATGCCAGGACGCGGGTGAG 193
* * * **** * **** ** ** * * ***
consensus_9882#0 GGGATCAGCGACGAGGGTGTCTTCTTTGCTGTCAAAGAGGTCTGCTTGTGTGATCAAGGG 297
consensus_9882#1 GAGGAGGATGATGCGGCCGCGGTGTTGACGCTGGAGGAGCTCAGGCTAGGGGA------- 246
* * ** * ** * * ** * * * *** ** * * * **
consensus_9882#0 AGCAATGCACAGCAGTGCATTTTTCAGCTTGAGCAGGAAATCGCACTTTTGAGTCAGTTT 357
consensus_9882#1 ------------------------------------------------------------
consensus_9882#0 GAACATGAAAATATTGTGCAGTACTATGGTACCGACAAAGAGGACTCAAAACTGTACATC 417
consensus_9882#1 ------------------------------------------------------------
consensus_9882#0 TTCCTTGAATTAGTCACCCAAGGATCTCTTGCATCTTTGTATCAGAAGTACAGACTGCGA 477
consensus_9882#1 ------------------------------------------------------------
consensus_9882#0 GATACTCATGTTTCAGCATATACAAGACAGATTCTTAATGGGTTGACTTACCTGCATGAA 537
consensus_9882#1 ------------------------------------------------------------
consensus_9882#0 CGAAACATTGTTCATAGGGATATCAAATGTGCCAATATATTGGTGCATGCCAATGGATCC 597
consensus_9882#1 ------------------------------------------------------------
consensus_9882#0 GTGAAACTTGCTGACTTTGGTCTTGCTAAGGAGATTACCAAATTCAACGTGCTTAAATCG 657
consensus_9882#1 ------------------------------------------------------------
consensus_9882#0 TGCAAAGGAACTGTTTATTGGATGGCACCTGAGGTTGTCAATCCCAAGACAACATATGGA 717
consensus_9882#1 ------------------------------------------------------------
consensus_9882#0 CCTGAAGCTGATATATGGAGTCTGGGCTGCACAGTCCTAGAGATGTTGACACGTCAACTT 777
consensus_9882#1 ------------------------------------------------------------
consensus_9882#0 CCCTATCCTGGTCTGGAATGGACACAAGCTTTATACAGGATTGGGAAGGGGGAA 831
consensus_9882#1 ------------------------------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||