cluster # 9884

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Oryza sativa
cluster # 9884 cluster # 9884 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9884#0 length = 2069 sequences # 5

consensus_9884#1 length = 800 sequences # 1
consensus_9884#2 length = 762 sequences # 1

consensusID : consensus_9884#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 5
consensus length = 2069
fasta sequence

                              [CATCTGAACCAAATCGTGCTCGGTCTCCGTCTCCACCTCCGCATATCATCCTCCGCTTCGCTTCCGCTCGATCGATTCCTCCCCTCCATCACCACCACTCCTCCGCCGCGTCGCCGTCGCCGTCACCGACAAGCCTCGCCTCTCCTCGCCGGTTCGCCGTCGCGGCCGCCTCCTTTGTCCGCTCCAGCGCCCTCCTCGGCCCGGATCGGCCCTTCCCCAGATGGAGAGGGCACTTGATTCCTTGACGTACAAAGGCTCCATTCCAGACGCTATCCTTCAGTCAAGAAGGGATAACAAACTCTTTGTAGTGTACATATCAGGTGAAGATGAGACTTCGAGTAGTTTGGAACAGTCGACACTTGTTAATGAAAGTGTGGCTGAAGTGATAGGCAACTGTTGCGTATTCCTGCATCTAAAACAAGGCAACGTCGATGCATCCCAATTTTCAGCTATATATCCACAGAAGGCTATCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCAAAGTTTCCTCAGAGTCAGTTCCTACCAGAGTAGCTAGTAGAGGTAAATCGTCAAAGGTAGCTGTGGATCAAGACAAGGCAACAACCACTAGCACCCCTATTGAACCTGCCCCTGTGAGGTCAAATGATATTCAGCTGGTCGTTCGCATTCCTGATGGACCTAGTCTGCAGATTAAACTGACAAAAGATGATAACTTAAGGAAGGTGAAGAATTTTGTGGATGAAAACCGTGCTAATGGGGCTGGATCTTACGATCTTGCTATGCTTTATCCAAGAAAAGTTTTCACTGAACAAGACATGGAAGCCACGTTGCATGAACTGGGTATTGAAACCCGGCAGGCTCTCACTATTGTTCCACATCATAAAACCATTCGAGCAGCAAAGCGCCAATCATCATCATCACCCCATGAAGGGGATAACAATATGGATGCAGACAGCTCAGGTGGTTCGGGATATTTCGGTTATCTGAGAACTGCCCTATCGTTTGTGAATCCACTGTCCTACTTGAGAGCAAATGCTGCTCCATCAAACCCTGATCAGTTGGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGACCCTGGAATCGTCCTGGAGAGGACACTGCTTCGGAAAGCCGTATTCCTGATAGTGCGAGGCAACAGGCTGCTAGGGATACTAGCTCCGGGAGCACCTTGAGGAGGCGGCCGAGACAATTCGGTGGCAACGTTCACAGTTTGAGAAGTGATGACCAAGGCCCATCTGATGATAGGAATGTTTACTGGAACGGGAATTCTACAGAGTTCGGAGGCGAAGATAAGAAATGAGAGCTGAGCACCGGCAATATCATGGCAGAGTTAAATATATACTTGGACAAATAACACGATCTAGGTAAATAAATACAAACAAATTTGAGATGTTAAATTCAGTGGTACCAGTACCACAACATAGACTTCTAGTGTAAAATGATAATACATCTGATGATTGGCTGTGATGGTTCGTTTCCGGGAGCCGATTCTTCGTCAGTTTGGGTAGTATGGAGAGATATTTTCGTTTGCAAAAAAAAGG]

[+] EMBL AK067658             [CATCTGAACCAAATCGTGCTCGGTCTCCGTCTCCACCTCCGCATATCATCCTCCGCTTCGCTTCCGCTCGATCGATTCCTCCCCTCCATCACCACCACTCCTCCGCCGCGTCGCCGTCGCCGTCACCGACAAGCCTCGCCTCTCCTCGCCGGTTCGCCGTCGCGGCCGCCTCCTTTGTCCGCTCCAGCGCCCTCCTCGGCCCGGATCGGCCCTTCCCCAGATGGAGAGGGCACTTGATTCCTTGACGTACAAAGGCTCCATTCCAGACGCTATCCTTCAGTCAAGAAGGGATAACAAACTCTTTGTAGTGTACATATCAGGTGAAGATGAGACTTCGAGTAGTTTGGAACAGTCGACACTTGTTAATGAAAGTGTGGCTGAAGTGATAGGCAACTGTTGCGTATTCCTGCATCTAAAACAAGGCAACGTCGATGCATCCCAATTTTCAGCTATATATCCACAGAAGGCTATCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCAAAGTTTCCTCAGAGTCAGTTCCTACCAGAGTAGCTAGTAGAGGTAAATCGTCAAAGGTAGCTGTGGATCAAGACAAGGCAACAACCACTAGCACCCCTATTGAACCTGCCCCTGTGAGGTCAAATGATATTCAGCTGGTCGTTCGCATTCCTGATGGACCTAGTCTGCAGATTAAACTGACAAAAGATGATAACTTAAGGAAGGTGAAGAATTTTGTGGATGAAAACCGTGCTAATGGGGCTGGATCTTACGATCTTGCTATGCTTTATCCAAGAAAAGTTTTCACTGAACAAGACATGGAAGCCACGTTGCATGAACTGGGTATTGAAACCCGGCAGGCTCTCACTATTGTTCCACATCATAAAACCATTCGAGCAGCAAAGCGCCAATCATCATCATCACCCCATGAAGGGGATAACAATATGGATGCAGACAGCTCAGGTGGTTCGGGATATTTCGGTTATCTGAGAACTGCCCTATCGTTTGTGAATCCACTGTCCTACTTGAGAGCAAATGCTGCTCCATCAAACCCTGATCAGTTGGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGACCCTGGAATCGTCCTGGAGAGGACACTGCTTCGGAAAGCCGTATTCCTGATAGTGCGAGGCAACAGGCTGCTAGGGATACTAGCTCCGGGAGCACCTTGAGGAGGCGGCCGAGACAATTCGGTGGCAACGTTCACAGTTTGAGAAGTGATGACCAAGGCCCATCTGATGATAGGAATGTTTACTGGAACGGGAATTCTACAGAGTTCGGAGGCGAAGATAAGAAATGAGAGCTGAGCACCGGCAATATCATGGCAGAGTTAAATATATACTTGGACAAATAACACGATCTAGGTAAATAAATACAAACAAATTTGAGATGTTAAATTCAGTGGTACCAGTACCACAACATAGACTTCTAGTGTAAAATGATAATACATCTGATGATTGGCTGTGATGGTTCGTTTCCGGGAGCCGATTCTTCGTCAGTTTGGGTAGTATGGAGAGATAT                    ]
[+] EMBL AK071663             [                                                                                      CATCACCACCACTCCTCCGCCGCGTCGCCGTCGCCGTCACCGACAAGCCTCGCCTCTCCTCGCCGGTTCGCCGTCGCGGCCGCCTCCTTTGTCCGCTCCAGCGCCCTCCTCGGCCCGGATCGGCCCTTCCCCAGATGGAGAGGGCACTTGATTCCTTGACGTACAAAGGCTCCATTCCAGACGCTATCCTTCAGTCAAGAAGGGATAACAAACTCTTTGTAGTGTACATATCAGGTGAAGATGAGACTTCGAGTAGTTTGGAACAGTCGACACTTGTTAATGAAAGTGTGGCTGAAGTGATAGGCAACTGTTGCGTATTCCTGCATCTAAAACAAGGCAACGTCGATGCATCCCAATTTTCAGCTATATATCCACAGAAGGCTATCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCAAAGTTTCCTCAGAGTCAGTTCCTACCAGAGTAGCTAGTAGAGGTAAATCGTCAAAGGTAGCTGTGGATCAAGACAAGGCAACAACCACTAGCACCCCTATTGAACCTGCCCCTGTGAGGTCAAATGATATTCAGCTGGTCGTTCGCATTCCTGATGGACCTAGTCTGCAGATTAAACTGACAAAAGATGATAACTTAAGGAAGGTGAAGAATTTTGTGGATGAAAACCGTGCTAATGGGGCTGGATCTTACGATCTTGCTATGCTTTATCCAAGAAAAGTTTTCACTGAACAAGACATGGAAGCCACGTTGCATGAACTGGGTATTGAAACCCGGCAGGCTCTCACTATTGTTCCACATCATAAAACCATTCGAGCAGCAAAGCGCCAATCATCATCATCACCCCATGAAGGGGATAACAATATGGATGCAGACAGCTCAGGTGGTTCGGGATATTTCGGTTATCTGAGAACTGCCCTATCGTTTGTGAATCCACTGTCCTACTTGAGAGCAAATGCTGCTCCATCAAACCCTGATCAGTTGGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGACCCTGGAATCGTCCTGGAGGGGAC                                                                                                                                                                                                                                                                                                                                                                                                                                                             ]
[-] EMBL CA764287             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    cttaGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATACCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCAGAGTTTCCTCAGAGTCAGTTCCTACCAGAGTAGCTAGTAGAGGTAAATCGTCAAAGGTAGCTGTGGATCAAGACAAGGCAACAAC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[-] EMBL CB679395             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                    TTCACTGAACAAGACATGGAAGCCACGTTGCATGAACTGGGTATTGAAACCCGGCAGGCTCTCACTATTGTTCCACATCATAAAACCATTCGAGCAGCAAAGCGCCAATCATCATCATCACCCCATGAAGGGGATAACAATATGGATGCAGACAGCTCAGGTGGTTCGGGATATTTCGGTTATCTGAGAACTGCCCTATCGTTTGTGAATCCACTGTCCTACTTGAGAGCAAATGCTGCTCCATCAAACCCTGATCAGTTGGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGACCCTGGAATCGTCCTGGAGAGGACACTGCTTCGGAAAGCCGTATTCCTGATAGTGCGAGGCAACAGGCTGCTAGGGATACTAGCTCCGGGAGCACCTTGAGGAGGCGGCCGAGACAATTCGGTGGCAACGTTCACAGTTTGAGAAGTGATGACCAAGGCCCATCTGATGATAGGAATGTTTACTGGAACGGGAATTCTACAGAGTTCGGAGGCGAAGATAAGAAATGAGAGCTGAGCACCGGCAATATCATGGCAGAGTTAAATATATACTTGGACAAATAACACGATCTAGGTAAATAAATACAAACAAATTTGAGATGTTAAATTCAGTGGTACCAGTACCACAACATAGACTTCTAGTGTAAAATGATAATACATTTGATGATTGGCTGTGATGGTTCGTTTCCGGGAGGGGATTCTTCGTCAGTTTGGGTAGTATGGAGAG                        ]
[-] EMBL CB682783             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           AGGCTCTCACTATTGTTCCACATCATAAAGCCATTCGAGCAGCAAAGCGCCAATCATCATCATCACCCCATGAAGGGGATATCAATATGGATGCAGACAGCTCAGGTGGTTCGGGATATTTCGGTTATCTGAGAACTGCCCTATCGTTTGTGAATCCTCTGTCCTCCTTGAGAGCAAATGGTGCTCCATCAAACCCTGATCAGTTGGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGACCCTGGAATCGTCCTGGAGAGGACACTGCTTCGGAAAGCCGTATTCTTGATAGTGCGAGGCAACAGGCTGCTAGGGATACTAGCTCCGGGAGCACCTTGAGGAGGCGGCCGAGACAATTCGGTGGCAACGTTCCCAGTTTGAGAAGTGATGACCAAGGCCCATGTGATGATAGGAATGTTTTCTGGAACGGGAATTCTACAGAGTTCGGAGGCGAAGATAAGAAATGAGAGCTGAGCTCCGGCAATATCATGGCAGAGTTAAATATATACTTGGACAAATACCACGATCTAGGTAAATAAATACAAACAAATTTGAGATGTTAAATTCAGTGGTACCAGTACCACAACATAGACGGATAGTGTAAAATGATAATACATCTGATGATTGGCTGTGATGGTTCGTTTCCGGGAGCCGATTCTTCGTCAGTTTGGGTAGTATGGAGAGATATTTTCGTTTGCAAAAAAAAGG]




>consensus_9884#0
CATCTGAACCAAATCGTGCTCGGTCTCCGTCTCCACCTCCGCATATCATCCTCCGCTTCG
CTTCCGCTCGATCGATTCCTCCCCTCCATCACCACCACTCCTCCGCCGCGTCGCCGTCGC
CGTCACCGACAAGCCTCGCCTCTCCTCGCCGGTTCGCCGTCGCGGCCGCCTCCTTTGTCC
GCTCCAGCGCCCTCCTCGGCCCGGATCGGCCCTTCCCCAGATGGAGAGGGCACTTGATTC
CTTGACGTACAAAGGCTCCATTCCAGACGCTATCCTTCAGTCAAGAAGGGATAACAAACT
CTTTGTAGTGTACATATCAGGTGAAGATGAGACTTCGAGTAGTTTGGAACAGTCGACACT
TGTTAATGAAAGTGTGGCTGAAGTGATAGGCAACTGTTGCGTATTCCTGCATCTAAAACA
AGGCAACGTCGATGCATCCCAATTTTCAGCTATATATCCACAGAAGGCTATCCCAAGTAT
ATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAA
AGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGC
AGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGAC
CACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCA
ATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCC
ACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTT
GGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGT
TAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGT
TCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCAA
AGTTTCCTCAGAGTCAGTTCCTACCAGAGTAGCTAGTAGAGGTAAATCGTCAAAGGTAGC
TGTGGATCAAGACAAGGCAACAACCACTAGCACCCCTATTGAACCTGCCCCTGTGAGGTC
AAATGATATTCAGCTGGTCGTTCGCATTCCTGATGGACCTAGTCTGCAGATTAAACTGAC
AAAAGATGATAACTTAAGGAAGGTGAAGAATTTTGTGGATGAAAACCGTGCTAATGGGGC
TGGATCTTACGATCTTGCTATGCTTTATCCAAGAAAAGTTTTCACTGAACAAGACATGGA
AGCCACGTTGCATGAACTGGGTATTGAAACCCGGCAGGCTCTCACTATTGTTCCACATCA
TAAAACCATTCGAGCAGCAAAGCGCCAATCATCATCATCACCCCATGAAGGGGATAACAA
TATGGATGCAGACAGCTCAGGTGGTTCGGGATATTTCGGTTATCTGAGAACTGCCCTATC
GTTTGTGAATCCACTGTCCTACTTGAGAGCAAATGCTGCTCCATCAAACCCTGATCAGTT
GGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGACCCTGGAATCGTCCTGGAGA
GGACACTGCTTCGGAAAGCCGTATTCCTGATAGTGCGAGGCAACAGGCTGCTAGGGATAC
TAGCTCCGGGAGCACCTTGAGGAGGCGGCCGAGACAATTCGGTGGCAACGTTCACAGTTT
GAGAAGTGATGACCAAGGCCCATCTGATGATAGGAATGTTTACTGGAACGGGAATTCTAC
AGAGTTCGGAGGCGAAGATAAGAAATGAGAGCTGAGCACCGGCAATATCATGGCAGAGTT
AAATATATACTTGGACAAATAACACGATCTAGGTAAATAAATACAAACAAATTTGAGATG
TTAAATTCAGTGGTACCAGTACCACAACATAGACTTCTAGTGTAAAATGATAATACATCT
GATGATTGGCTGTGATGGTTCGTTTCCGGGAGCCGATTCTTCGTCAGTTTGGGTAGTATG
GAGAGATATTTTCGTTTGCAAAAAAAAGG

consensusID : consensus_9884#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 800
fasta sequence

                              [GTGCTTGTCCTGATTCCGATTTAAAATGAATGGGCAGATGTCCTTGCATCCATTTTAAAAACAATTATTTGATGATGTTCACATTTGAACTTCATGCCATAATTTGTTGTGGTGAAATACATTTGTTTAACTTAAAACTTTAATTGCAAGGGTATCTTACTGACATCATGGATTGTTAGTGCTCCGATATGAATAGAATGTTGAAACATTTTGATTTGATTATCATTTGCTGATGGTTGAATGTGATGAGATAGGTTCATCATATTTTCTTATACAACAGTAGAACTGCATCATGATTGTTATAACGGTAGAACTACATGATAAGCATTCAATTATATCCAGGAGGTTATCTAAGGCTATCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTT]

[+] EMBL CB682782             [GTGCTTGTCCTGATTCCGATTTAAAATGAATGGGCAGATGTCCTTGCATCCATTTTAAAAACAATTATTTGATGATGTTCACATTTGAACTTCATGCCATAATTTGTTGTGGTGAAATACATTTGTTTAACTTAAAACTTTAATTGCAAGGGTATCTTACTGACATCATGGATTGTTAGTGCTCCGATATGAATAGAATGTTGAAACATTTTGATTTGATTATCATTTGCTGATGGTTGAATGTGATGAGATAGGTTCATCATATTTTCTTATACAACAGTAGAACTGCATCATGATTGTTATAACGGTAGAACTACATGATAAGCATTCAATTATATCCAGGAGGTTATCTAAGGCTATCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTT]




>consensus_9884#1
GTGCTTGTCCTGATTCCGATTTAAAATGAATGGGCAGATGTCCTTGCATCCATTTTAAAA
ACAATTATTTGATGATGTTCACATTTGAACTTCATGCCATAATTTGTTGTGGTGAAATAC
ATTTGTTTAACTTAAAACTTTAATTGCAAGGGTATCTTACTGACATCATGGATTGTTAGT
GCTCCGATATGAATAGAATGTTGAAACATTTTGATTTGATTATCATTTGCTGATGGTTGA
ATGTGATGAGATAGGTTCATCATATTTTCTTATACAACAGTAGAACTGCATCATGATTGT
TATAACGGTAGAACTACATGATAAGCATTCAATTATATCCAGGAGGTTATCTAAGGCTAT
CCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACAT
CAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGG
TACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATAC
CACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTC
ATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGT
GGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATC
CTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAG
TGCGCAAGTTAAAGGTTCTT

consensusID : consensus_9884#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 762
fasta sequence

                              [AAGGTTAAAAATTAGACTCCTAACAGGACTGGAGGGACCAGAGATGGACTTATTTTCTGTGATTGTTATATATTGAAGTTACCAAGTTGCTCTTGTGTCTTTATGTATGTGCACAGGTGGCTGAAGTGATAGGCAACTGTTGCGTATTCCTGCATCTAAAACAAGGCAACGTCGATGCATCCCAATTTTCAGCTATATATCCACAGAAGGCTATCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCA]

[+] EMBL CB679394             [AAGGTTAAAAATTAGACTCCTAACAGGACTGGAGGGACCAGAGATGGACTTATTTTCTGTGATTGTTATATATTGAAGTTACCAAGTTGCTCTTGTGTCTTTATGTATGTGCACAGGTGGCTGAAGTGATAGGCAACTGTTGCGTATTCCTGCATCTAAAACAAGGCAACGTCGATGCATCCCAATTTTCAGCTATATATCCACAGAAGGCTATCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCA]




>consensus_9884#2
AAGGTTAAAAATTAGACTCCTAACAGGACTGGAGGGACCAGAGATGGACTTATTTTCTGT
GATTGTTATATATTGAAGTTACCAAGTTGCTCTTGTGTCTTTATGTATGTGCACAGGTGG
CTGAAGTGATAGGCAACTGTTGCGTATTCCTGCATCTAAAACAAGGCAACGTCGATGCAT
CCCAATTTTCAGCTATATATCCACAGAAGGCTATCCCAAGTATATCTGTCATTGGACAGA
ATGGTGTTATGCTATGGTGTCATGAGGGATACATCAGCTCGAAAGATCTGAAAGAAAATA
TTGAGAAAGCTTGGGCTACCCTTCACCTGCAGGGTACAGCAGCAGCCTTTCTGACTGCAT
CACTTGCTTCAAGAATGACTGAACCTGTGAATACCACCCCGACCACTCTACCTACTCAAG
GAGGCTCATCTGCTGCAGAGAATCCCTCTACTTCATCAAATCAATCTACAGGAACTTCTG
GAGCCAGTGGGTTTGCTAATCCTACTGATTCGGTGGCACAGCCACCTAGAAGCACAAGCC
GTGATGAAACTCCCAGCATAAGTGAAAAAGAATCCTCAAATTTGGATTCAAGTCCAGGTA
ATAGAACTGTTCAAGAAAGGCCAGATTCAGATAGTGCGCAAGTTAAAGGTTCTTTGCCTG
ATCATCCAAGGAGCTCAAATATAGAAGGTTGTGCAAATCCAGTTCAATCAGGCAATACAG
CATCACTAAAACAGAAAAATAAAGTGGATGATGGTTTCACCA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9884#0      CATCTGAACCAAATCGTGCTCGGTCTCCGTCTCCACCTCCGCATATCATCCTCCGCTTCG 60
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      CTTCCGCTCGATCGATTCCTCCCCTCCATCACCACCACTCCTCCGCCGCGTCGCCGTCGC 120
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      -----------------------------------------------------------G 1
                                                                                  

consensus_9884#0      CGTCACCGACAAGCCTCGCCTCTCCTCGCCGGTTCGCCGTCGCGGCCGCCTCCTTTGT-- 178
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      TGCTTGTCCTGATTCCGATTTAAAATGAATGGGCAGATGTCCTTGCATCCATTTTAAAAA 61
                                                                                  

consensus_9884#0      CCGCTCCAGCGCCCTCCTCGGCCCGGATCGGCCCTTCCCCAGATGGAGAGGGCACTTGAT 238
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      CAATTATTTGATGATGTTCACATTTGAACTTCATGCCATAATTTGTTGTGGTGAAATACA 121
                                                                                  

consensus_9884#0      TCCTTGACGTACAAAGGCTCCATTCCAGACGCTATCCTTCAGTCAAGAAGGGATAACAAA 298
consensus_9884#2      ------AAGGTTAAAAATTAGACTCCTAACAGGACTGGAGGGACCAGAGATG--GACTTA 52
consensus_9884#1      TTTGTTTAACTTAAAACTTTAATTGCAAG-GGTATCTTACTGACATCATGGA-TTGTTAG 179
                                  ***   *  * * *       *       * *   *            

consensus_9884#0      CTCTTTGTAGTGTACATATCAGGTGAAGATGAGACTTCGAGTAGTTTGGAACAGTCGACA 358
consensus_9884#2      TTTTCTGTGATTGTTATAT--ATTGAAGTTA-----CCAAGTTGCTC----TTGTGTCTT 101
consensus_9884#1      TGCTCCGATATGAATAGAATGTTGAAACATTTTGATTTGATTATCATTTGCTGATGGTTG 239
                         *  *   *    * *       **  *         * *            *     

consensus_9884#0      CTTGTTAATGAAAGTGTGGCTGAAGTGAT---AGGCAACTGTTG---CGTATTCCTGCAT 412
consensus_9884#2      TATGTATGTGCACAGGTGGCTGAAGTGAT---AGGCAACTGTTG---CGTATTCCTGCAT 155
consensus_9884#1      AATGTGATGAGATAGGTTCATCATATTTTCTTATACAACAGTAGAACTGCATCATGATTG 299
                        ***      *   **   * *  *  *   *  **** ** *    * **        

consensus_9884#0      CTAAAACAAGGCAACGTC--GATGCATCCCAATTTTCAGCTATATATCCACAGAAGGCTA 470
consensus_9884#2      CTAAAACAAGGCAACGTC--GATGCATCCCAATTTTCAGCTATATATCCACAGAAGGCTA 213
consensus_9884#1      TTATAACGGTAGAACTACATGATAAGCATTCAATTATATCCAGGAGGTTATCTAAGGCTA 359
                       ** ***     ***  *  ***        * **  * * *       *   *******

consensus_9884#0      TCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACA 530
consensus_9884#2      TCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACA 273
consensus_9884#1      TCCCAAGTATATCTGTCATTGGACAGAATGGTGTTATGCTATGGTGTCATGAGGGATACA 419
                      ************************************************************

consensus_9884#0      TCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGG 590
consensus_9884#2      TCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGG 333
consensus_9884#1      TCAGCTCGAAAGATCTGAAAGAAAATATTGAGAAAGCTTGGGCTACCCTTCACCTGCAGG 479
                      ************************************************************

consensus_9884#0      GTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATA 650
consensus_9884#2      GTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATA 393
consensus_9884#1      GTACAGCAGCAGCCTTTCTGACTGCATCACTTGCTTCAAGAATGACTGAACCTGTGAATA 539
                      ************************************************************

consensus_9884#0      CCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTT 710
consensus_9884#2      CCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTT 453
consensus_9884#1      CCACCCCGACCACTCTACCTACTCAAGGAGGCTCATCTGCTGCAGAGAATCCCTCTACTT 599
                      ************************************************************

consensus_9884#0      CATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGG 770
consensus_9884#2      CATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGG 513
consensus_9884#1      CATCAAATCAATCTACAGGAACTTCTGGAGCCAGTGGGTTTGCTAATCCTACTGATTCGG 659
                      ************************************************************

consensus_9884#0      TGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAAT 830
consensus_9884#2      TGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAAT 573
consensus_9884#1      TGGCACAGCCACCTAGAAGCACAAGCCGTGATGAAACTCCCAGCATAAGTGAAAAAGAAT 719
                      ************************************************************

consensus_9884#0      CCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATA 890
consensus_9884#2      CCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATA 633
consensus_9884#1      CCTCAAATTTGGATTCAAGTCCAGGTAATAGAACTGTTCAAGAAAGGCCAGATTCAGATA 779
                      ************************************************************

consensus_9884#0      GTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTG 950
consensus_9884#2      GTGCGCAAGTTAAAGGTTCTTTGCCTGATCATCCAAGGAGCTCAAATATAGAAGGTTGTG 693
consensus_9884#1      GTGCGCAAGTTAAAGGTTCTT--------------------------------------- 800
                      *********************                                       

consensus_9884#0      CAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATG 1010
consensus_9884#2      CAAATCCAGTTCAATCAGGCAATACAGCATCACTAAAACAGAAAAATAAAGTGGATGATG 753
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      GTTTCACCAAAGTTTCCTCAGAGTCAGTTCCTACCAGAGTAGCTAGTAGAGGTAAATCGT 1070
consensus_9884#2      GTTTCACCA--------------------------------------------------- 762
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      CAAAGGTAGCTGTGGATCAAGACAAGGCAACAACCACTAGCACCCCTATTGAACCTGCCC 1130
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      CTGTGAGGTCAAATGATATTCAGCTGGTCGTTCGCATTCCTGATGGACCTAGTCTGCAGA 1190
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      TTAAACTGACAAAAGATGATAACTTAAGGAAGGTGAAGAATTTTGTGGATGAAAACCGTG 1250
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      CTAATGGGGCTGGATCTTACGATCTTGCTATGCTTTATCCAAGAAAAGTTTTCACTGAAC 1310
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      AAGACATGGAAGCCACGTTGCATGAACTGGGTATTGAAACCCGGCAGGCTCTCACTATTG 1370
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      TTCCACATCATAAAACCATTCGAGCAGCAAAGCGCCAATCATCATCATCACCCCATGAAG 1430
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      GGGATAACAATATGGATGCAGACAGCTCAGGTGGTTCGGGATATTTCGGTTATCTGAGAA 1490
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      CTGCCCTATCGTTTGTGAATCCACTGTCCTACTTGAGAGCAAATGCTGCTCCATCAAACC 1550
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      CTGATCAGTTGGCAAATCAGGGGTCGCCACAGTACAGACCGAGCACTGGACCCTGGAATC 1610
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      GTCCTGGAGAGGACACTGCTTCGGAAAGCCGTATTCCTGATAGTGCGAGGCAACAGGCTG 1670
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      CTAGGGATACTAGCTCCGGGAGCACCTTGAGGAGGCGGCCGAGACAATTCGGTGGCAACG 1730
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      TTCACAGTTTGAGAAGTGATGACCAAGGCCCATCTGATGATAGGAATGTTTACTGGAACG 1790
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      GGAATTCTACAGAGTTCGGAGGCGAAGATAAGAAATGAGAGCTGAGCACCGGCAATATCA 1850
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      TGGCAGAGTTAAATATATACTTGGACAAATAACACGATCTAGGTAAATAAATACAAACAA 1910
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      ATTTGAGATGTTAAATTCAGTGGTACCAGTACCACAACATAGACTTCTAGTGTAAAATGA 1970
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      TAATACATCTGATGATTGGCTGTGATGGTTCGTTTCCGGGAGCCGATTCTTCGTCAGTTT 2030
consensus_9884#2      ------------------------------------------------------------
consensus_9884#1      ------------------------------------------------------------
                                                                                  

consensus_9884#0      GGGTAGTATGGAGAGATATTTTCGTTTGCAAAAAAAAGG 2069
consensus_9884#2      ---------------------------------------
consensus_9884#1      ---------------------------------------