Home
Who am I
Technology
EST Assembly
Contact

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9888 cluster # 9888       Sequences # 7       consensus # 1

see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_9888#0 length = 571 sequences # 7  
consensusID : consensus_9888#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 7
consensus length = 571
fasta sequence 
                              [CGTATTTTATCTTTGTTACCTTTTCTTTATAATGAAAACTAATTTGATCCATGG-GAAATAAGCCTACTCCTTAATCAAATCGGAGCTGGAATATCTGTTCGATAAAGATGCAGATCTTGAGTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTTTTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGAATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCTAACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATATAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGATGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACAAACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTAAGGCTCTAGCTTTCCGTTGGTTAGCAGTTCGAAAAAGTTC]

[+] EMBL CF340720             [CGTATTTTATCTTTGTTACCTTTTCTTTATAATGAAAAC AATTTGATCCATGG GAAATAAGCCTACTCCTTAATCAAATCGGAGCTGGAATATCTGTTCGATAAAGATGCAGATCTTGAGTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTTTTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGAATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCTAACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATATAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGATGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACAAACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTA                                        ]
[+] EMBL CF338833             [ GTATTTTATCTTTGTTACCTTTTCTTTATAATGAAAACTAATTTGATCCTTGG GAAATAAGCCTACTCCTTAATCAAATCGGAGCTGGAATATCTGTTCGATAAAGATGCAGATCTTGAGTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTTTTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGAATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCTAACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATATAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGATGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACAAACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTAAGGCTCTAGCTTTCCGTTGGTTAGC               ]
[+] EMBL CF338435             [ GTATTCTATTTTTGTTACCTTTTCTTTATAATGAAAACTAATTTGATCCATGGTTAAAT AGCCTACTCCTTAATCAAATCGGAGCTGGAATATCTGTTCGATAAAGATGCAGATCTTGAGTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTTTTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGAATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCTAACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATATAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGATGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACAAACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTAAGGCTC                                  ]
[+] EMBL CF340621             [                          TTATAATGAAAACTAATTTGATCCATGG GAAATAAGCCTACTCCTTAATCAAATCGGAGCTGGAATATCTGTTCGATAAAGATGCAGATCTTGAGTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTTTTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGAATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCTAACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATATAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGATGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACAAACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTAAGGCTCTAGCTTTCCGTTGGTTAGCAG             ]
[+] EMBL CF340742             [                           TATAATGAAAACTAATTTGATCCATGG GAAATAAGCCTACTCCTTAATCAAATCGGAGCTGGAATATCTGTTCGATAAAGATGCAGATCTTGAGTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTTTTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGAATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCTAACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATATAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGATGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACAAACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTAAGGCTCTAGCTTTCCGTTGGTTA                 ]
[+] EMBL CF339107             [                              AATGAAAACTAATTTGATCCATGG GAAATAAGCCTACTCCTTAATCAAATCGGAGCTGGAATATCTGTTCGATAAAGATGCAGATCTTGAGTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTTTTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGAATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCTAACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATATAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGATGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACAAACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTAAGGCTCTAGCTTTCCGTTGGTTAGCAGTTCGAAAAAGTTC]
[+] EMBL CF338490             [                                                                                                TGTTCGATAAAGATGCAGATCTTGAGTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTTTTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGAATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCTAACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATATAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGATGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACAAACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTAAGGCTC                                  ]




>consensus_9888#0
CGTATTTTATCTTTGTTACCTTTTCTTTATAATGAAAACTAATTTGATCCATGGGAAATA
AGCCTACTCCTTAATCAAATCGGAGCTGGAATATCTGTTCGATAAAGATGCAGATCTTGA
GTCTATTGTTGAAAAAGTCAACAGGATTTCATTTTTGGAAAAGAATTGGATTGAATTCTT
TTCGTTCATTTCCAATCCAATATGAAAAAACTTTTCAATATTTCGACCTTCCCGGAGGGA
ATTCTCCGGGAGAATCTGTTCTATCCATTCCATCTTTACCTATTTATTTCATCTATACCT
AACCTATTTCATCATACGATAAGTTGTTCAAGATGGTGGAAAAGCAATTACTATCTAATA
TAGCTATTTGTGCAAGTGTTTTACGATTTGGAAGCAACTGCCTCTTGTACAAATATTGGA
TGAATCTATTATAAGAAACCCCATTGGCACGAGCTGCTGCATTGATCCGAGTAATCCACA
AACGACGAAGATCTCTCTTGCGTTTACCTCTATCTCGGTGGGCGGAAACTAAGGCTCTAG
CTTTCCGTTGGTTAGCAGTTCGAAAAAGTTC

clustalw multiple alignements is not computed in this case
Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner    (hubert.wassner@noos.fr)