cluster # 9895

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9895 cluster # 9895 Sequences # 7 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9895#0 length = 501 sequences # 6

consensus_9895#1 length = 217 sequences # 1

consensusID : consensus_9895#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 6
consensus length = 501
fasta sequence

                              [GGCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGGCAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTG-AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCT-GTTTGTT-C-----TAAAAAAAAAA]

[+] EMBL AU069675             [GGCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCA CTCGCGCGATCAATCGTCGGCGGCA CGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTGAAGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCNGGCGGTGGCCGATGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGANAAGTGATCCCGGCCTGTGTAGAGACGG                                                                                                                                                                                                   ]
[+] EMBL AU165278             [ GCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGGCAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTG AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGNGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCTTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTG TTCTTGGTTCATGAAATTTTC CAATAATAATGTACTAa                                                                                                              ]
[+] EMBL AU165279             [  CTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGGCAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTGGTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTG AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCT GTTTGTT C     TAAAAAAA   ]
[-] EMBL AU225898             [                                                                                                                     ccgcttGCAGCGCGTCCTTTGGCTTTGCGCCATCGGCAGCGCCGTG AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCT GTTAGTTCC     TAAAAAgcggc]
[+] EMBL BQ908450             [                                                                                                                                   TCCTCTGGCTCTGCGCCATCGGCAGCGCCGTG AGCCTGTACTACGTGGCGGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGACGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCTGGTTTGTT CTCTTTTAAAAAAAAAA]
[+] EMBL AU057881             [                                                                                                                                                                                                                                 GGCTCAAGGCCCTCGACGGNGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCCTGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCNATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCT GTTTGTT C     TAAAAAAAAAA]




>consensus_9895#0
GGCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGG
CAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTG
GTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTGAGCCTGTACTACGTGGC
GGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGA
CGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCC
TGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTT
TCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGC
GATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCAT
CTGTTTGTTCTAAAAAAAAAA

consensusID : consensus_9895#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 217
fasta sequence

                              [AGAGGACGAGACAAGGGGGAACCGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCTGTTTGTTCTCTTTTCTTTTAGTAATTTTGGCTCCTTAAAAAAAAAAA]

[-] EMBL CA761612             [AGAGGACGAGACAAGGGGGAACCGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCTGTTTGTTCTCTTTTCTTTTAGTAATTTTGGCTCCTTAAAAAAAAAAA]




>consensus_9895#1
AGAGGACGAGACAAGGGGGAACCGAGTTATATTTTTGCTTACCTTGTTTCTTGTTTCATG
AAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGCGATAACTGGATT
ACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCATCTGTTTGTTCTC
TTTTCTTTTAGTAATTTTGGCTCCTTAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9895#0      GGCTGCGGCCCGCACGGCGAACGGAGCGGCGGCGCAGCTCGCGCGATCAATCGTCGGCGG 60
consensus_9895#1      ------------------------------------------------------------
                                                                                  

consensus_9895#0      CAGCGGCGGCGGCGGCGGCGGGATGGGGCTCGGGGGGCGAGGCGTGGTGGGGGAGAGGTG 120
consensus_9895#1      ------------------------------------------------------------
                                                                                  

consensus_9895#0      GTCGCAGCGCGTCCTCTGGCTCTGCGCCATCGGCAGCGCCGTGAGCCTGTACTACGTGGC 180
consensus_9895#1      ------------------------------------------------------------
                                                                                  

consensus_9895#0      GGTGGAGAGGCAGGCGCAGAACCGCGCGCGGGCGGTGGCCGAGGGGCTCAAGGCCCTCGA 240
consensus_9895#1      ------------------------------------------------------------
                                                                                  

consensus_9895#0      CGGCGCCGGCGCCGGAGAGGACGTGTGACTTCGCTGTGTGCTGGAGAGGTGATCCCGGCC 300
consensus_9895#1      ------------------------------------------------------------
                                                                                  

consensus_9895#0      TGTGTAGAGACGGCCTCTCTGTTCGAGCTCGAAACGAGTTATATTTTTGCTTACCTTGTT 360
consensus_9895#1      -------AGAGGAC-----GAGACAAGGGGGAACCGAGTTATATTTTTGCTTACCTTGTT 48
                             *** * *         * **   *** **************************

consensus_9895#0      TCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGC 420
consensus_9895#1      TCTTGTTTCATGAAATTTTCGCAATAATAATGTACTAGTAATTGCCCCCTTTGTCATTGC 108
                      ************************************************************

consensus_9895#0      GATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCAT 480
consensus_9895#1      GATAACTGGATTACAATTTGCGATATGGGAGCCAGAAATGATGGCCGAAATGAATGTCAT 168
                      ************************************************************

consensus_9895#0      CTGTTTGTTCTAAAAA-----AAAAA----------------------- 501
consensus_9895#1      CTGTTTGTTCTCTTTTCTTTTAGTAATTTTGGCTCCTTAAAAAAAAAAA 217
                      ***********          *  **