cluster # 9896

These datas are free for academic use only, please contact me for any other use.

Oryza sativa
cluster # 9896 cluster # 9896 Sequences # 7 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_9896#0 length = 1070 sequences # 4

consensus_9896#1 length = 298 sequences # 2
consensus_9896#2 length = 287 sequences # 1

consensusID : consensus_9896#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 4
consensus length = 1070
fasta sequence

                              [CCGCCGCCATTTGGTTAGCATCATCGGTCACTGCATTGTTGAAGATCAAGAGAATCCTAATATTGCTAGTTCATTATGCCTCCTTTCTGAATGCGTAACAAATGGATCCCTAAGAAGTCATCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCATTGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAATGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTTTAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGCCACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGNACAGAACAAGGGGACAAGGATGACATTTACCAGTTCGGCCTAATTCTTCTGGAAGTAATCACAGGCAAGCCAACAGAGTCCCCAAAAGACCTGGACTCCCTGAAAACTCAGATAAGTGAAGCTATAGCTGAAGACCCAGATTTATTGAAAGACATGGCGGACCCGACGATCCGCGGAACGTTCGCCGTCGAGTCGCTGAGCACGGTGGCCGAGATAGCACTCAATTGCATTGCCAGTGACACAAGCAGCCGGCCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGAGAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTCCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTAACATTCCAGCTAGAGCAATTAAGACCAAAATTATTGGACCAATATTACTTATGGTGATCTGGGGACAGCATTTACATCTCCACCAAACGAAAAAA]

[+] EMBL OSR28751A            [CCGCCGCCATTTGGTTAGCATCATCGGTCACTGCATTGTTGAAGATCAAGAGAATCCTAATATTGCTAGTTCATTATGCCTCCTTTCTGAATGCGTAACAAATGGATCCCTAAGAAGTCATCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCATTGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAATGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTTTAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGCCACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGNACAGAACAA                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ]
[+] EMBL AK111758             [                                                                                                     ATGGATCCCTAAGAAGTCATCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCATTGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAATGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTTTAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGCCACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGCACAGAACAAGGGGACAAGGATGACATTTACCAGTTCGGCCTAATTCTTCTGGAAGTAATCACAGGCAAGCCAACAGAGTCCCCAAAAGACCTGGACTCCCTGAAAACTCAGATAAGTGAAGCTATAGCTGAAGACCCAGATTTATTGAAAGACATGGCGGACCCGACGATCCGCGGAACGTTCGCCGTCGAGTCGCTGAGCACGGTGGCCGAGATAGCACTCAATTGCATTGCCAGTGACACAAGCAGCCGACCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGAGAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTCCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTAACATTCCAGCTAGAGCAATTAAGACCAAAA                                                                 ]
[+] EMBL C99455               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              CGAGATAGCACTCAATTGCATTGCCAGTGACACAAGNNACCGGNCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGAGAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCT                                                                                                                                                                                                                                      ]
[+] EMBL C22603               [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                CATTGCCAGTGACACAAGCAGCCGGCCCTCCATTGAGGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGAGAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTTCACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTCCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTAACATTCCAGCTAGAGCAATTAAGACCAAAATTATTGGACCAATATTACTTATGGTGATCTGGGGACAGCATTTACATCTCCACCAAACGAAAAAA]




>consensus_9896#0
CCGCCGCCATTTGGTTAGCATCATCGGTCACTGCATTGTTGAAGATCAAGAGAATCCTAA
TATTGCTAGTTCATTATGCCTCCTTTCTGAATGCGTAACAAATGGATCCCTAAGAAGTCA
TCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCAT
TGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAA
TGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTT
TAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGC
CACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGNACAGAACAAGGGGACAAGGATGA
CATTTACCAGTTCGGCCTAATTCTTCTGGAAGTAATCACAGGCAAGCCAACAGAGTCCCC
AAAAGACCTGGACTCCCTGAAAACTCAGATAAGTGAAGCTATAGCTGAAGACCCAGATTT
ATTGAAAGACATGGCGGACCCGACGATCCGCGGAACGTTCGCCGTCGAGTCGCTGAGCAC
GGTGGCCGAGATAGCACTCAATTGCATTGCCAGTGACACAAGCAGCCGGCCCTCCATTGA
GGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGA
GAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTT
CACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCT
GTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGA
GGTGTGTGTGTGTTCGTCCTTTTCCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTTG
TTGCTCAAAGTTGTAACATTCCAGCTAGAGCAATTAAGACCAAAATTATTGGACCAATAT
TACTTATGGTGATCTGGGGACAGCATTTACATCTCCACCAAACGAAAAAA

consensusID : consensus_9896#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 298
fasta sequence

                              [GGGCGGACGCGTGGGTGACTAAGCCAAAAAAGAGGCAATTTCAC-TCTCCGAGTCAAGCCAAAAGATGCCATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTTCGTCCTTTTCCTCGTGTATAGAAGT--TCATTTTTTTTTCCCTTGTTGCTC-AAGTTGTAACATTCCATCCAGCTAGAGC-ATTAAGACCCAAATTATTGGACCCAAAAAAAAAAAAAAACAACAAAANN]

[+] EMBL BI796412             [GGGCGGACGCGTGGGTGACTAAGCCAAAAAAGAGGCAATTTCAC TCTCCGAGTCAAGCCAAAAGATGCCATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTTCGTCCTTTTCCTCGTGTATAGAAGT  TCATTTTTTTTTCCCTTGTTGCTC AAGTTGTAACATTCCATCCAGCTAGAGC ATTAAGACCCAAATTATTGGACCCAAAAAAAAAA               ]
[+] EMBL CA764549             [                        CAAAAAAGAGGCAATTTCACTTCTCCGAGTC AGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTTCGTCCTTTTCCTCGTGTATAGAAGTTCTCTTTTTTTTTTCCCTTGTTGCTCAAAGTTGTAACATTCCATCCAGCTAGAGCAATTAAGACCAAAATTATTGGACCAAAAAAAAAAAAAAAACAACAAAANN]




>consensus_9896#1
GGGCGGACGCGTGGGTGACTAAGCCAAAAAAGAGGCAATTTCACTCTCCGAGTCAAGCCA
AAAGATGCCATTTCACTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGGGTGTGTTG
TTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTTCGTCCTTT
TCCTCGTGTATAGAAGTTCATTTTTTTTTCCCTTGTTGCTCAAGTTGTAACATTCCATCC
AGCTAGAGCATTAAGACCCAAATTATTGGACCCAAAAAAAAAAAAAAACAACAAAANN

consensusID : consensus_9896#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 287
fasta sequence

                              [CTCCGGGTCAAGCAAAAAGATGCAATTTCNCTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTTCCTTGTGTNTAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTNACATTCCAGCTNGNGCNATTNAGNCCNAAATTNTTGGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]

[+] EMBL C99456               [CTCCGGGTCAAGCAAAAAGATGCAATTTCNCTTTCAGATTGGTTGCGATTTTGCTGTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGTGTGTGTGTTCGTCCTTTTTCCTTGTGTNTAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGCTCAAAGTTGTNACATTCCAGCTNGNGCNATTNAGNCCNAAATTNTTGGNCCNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA]




>consensus_9896#2
CTCCGGGTCAAGCAAAAAGATGCAATTTCNCTTTCAGATTGGTTGCGATTTTGCTGTAAA
AGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGAGGTGT
GTGTGTGTTCGTCCTTTTTCCTTGTGTNTAGAAGTTCTCTTGTTTTTTTCCTCTTGTTGC
TCAAAGTTGTNACATTCCAGCTNGNGCNATTNAGNCCNAAATTNTTGGNCCNAAAAAAAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_9896#0      CCGCCGCCATTTGGTTAGCATCATCGGTCACTGCATTGTTGAAGATCAAGAGAATCCTAA 60
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      TATTGCTAGTTCATTATGCCTCCTTTCTGAATGCGTAACAAATGGATCCCTAAGAAGTCA 120
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      TCTAACCGAGTGGAGGAAGCGTGAGATGCTAAAATGGCCCCAACGTGTTTCTGCTGCCAT 180
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      TGGTGTCGCCAGAGGGATCCAGTTTTTGCATGATGTGACTGCTCCGGGCATTGTACACAA 240
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      TGATCTAAGCATCGAAAATATTCTTCTGGACAAGACACTCACTTCCAAAATCAGCAACTT 300
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      TAACCTCCCGTTGATATCAACTAGCAAGAATGGCAAGATATTCTCAGAATCCCCCTTTGC 360
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      CACATCTGAAGACAATGATCTCGGCAGCGTGCCAAGNACAGAACAAGGGGACAAGGATGA 420
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      CATTTACCAGTTCGGCCTAATTCTTCTGGAAGTAATCACAGGCAAGCCAACAGAGTCCCC 480
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      AAAAGACCTGGACTCCCTGAAAACTCAGATAAGTGAAGCTATAGCTGAAGACCCAGATTT 540
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      ATTGAAAGACATGGCGGACCCGACGATCCGCGGAACGTTCGCCGTCGAGTCGCTGAGCAC 600
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      GGTGGCCGAGATAGCACTCAATTGCATTGCCAGTGACACAAGCAGCCGGCCCTCCATTGA 660
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      GGACGTCCTCTGGAACCTGCAGTACTCCATGCAGGTGCAGGACGGTTGGGCAAGCAGCGA 720
consensus_9896#1      ------------------------------------------------------------
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      GAGCCTGAGCCTGAGCACCAGATCACAGGGATGAGTAAGCACAAAAAAGAGGGGCAATTT 780
consensus_9896#1      ---------------GGGCGGA-CGCGTGGGTGACTAAGC-CAAAAAAGAGG--CAATTT 41
consensus_9896#2      ------------------------------------------------------------
                                                                                  

consensus_9896#0      CACTTCTCCGGGTCAAGCAAAAAGATGCAATTTCACTTTCAGATTGGTTGCGATTTTGCT 840
consensus_9896#1      CACT-CTCCGAGTCAAGCCAAAAGATGCCATTTCACTTTCAGATTGGTTGCGATTTTGCT 100
consensus_9896#2      -----CTCCGGGTCAAGCAAAAAGATGCAATTTCNCTTTCAGATTGGTTGCGATTTTGCT 55
                           ***** ******* ********* ***** *************************

consensus_9896#0      GTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGA 900
consensus_9896#1      GTAAAAGGGTGGGTGTGTTGTTCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGA 160
consensus_9896#2      GTAAAAGGGTGAGTTTGTTGTGCTGTTTCGTTCCTTTTCCTGCGATTTTGCTGTGGGAGA 115
                      *********** ** ****** **************************************

consensus_9896#0      GGTGTGTGTGTGTTCGTCCTTTT-CCTTGTGTATAGAAGTTCTCTTGTTTTTTTCCTCTT 959
consensus_9896#1      GGTGTGTGTG--TTCGTCCTTTT-CCTCGTGTATAGAAGTTCATTT---TTTTTTCCCTT 214
consensus_9896#2      GGTGTGTGTGTGTTCGTCCTTTTTCCTTGTGTNTAGAAGTTCTCTTGTTTTTTTCCTCTT 175
                      **********  *********** *** **** *********  **   ***** * ***

consensus_9896#0      GTTGCTCAAAGTTGTAACATTCCA----GCTAGAGCAATTAAGACCAAAATTATTGGACC 1015
consensus_9896#1      GTTGCTCAA-GTTGTAACATTCCATCCAGCTAGAGCA-TTAAGACCCAAATTATTGGACC 272
consensus_9896#2      GTTGCTCAAAGTTGTNACATTCCA----GCTNGNGCNATTNAGNCCNAAATTNTTGGNCC 231
                      ********* ***** ********    *** * **  ** ** ** ***** **** **

consensus_9896#0      AATATTACTTATGGTGATCTGGGGACAGCATTTACATCTCCACCAAACGAAAAAA- 1070
consensus_9896#1      CAAAAAAAAAAAAAAACAACAAAANN------------------------------ 298
consensus_9896#2      NAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 287
                       * *  *   *