cluster # 990

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Oryza sativa
cluster # 990 cluster # 990 Sequences # 2 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_990#0 length = 695 sequences # 1

consensus_990#1 length = 684 sequences # 1

consensusID : consensus_990#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 695
fasta sequence

                              [TTTTTTTTTTTTTTTAGCTAGCATGAGACACTCTTGTCACACTCTTTTATCTCAATGACATGTGAGGTCTACATGATGGATAAGGAATCTCGTCACAAGTGTGGTTATGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGACGAGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCTAGCATAGATGATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTGAGATCCTTGCGGATGTTGAAAGCAGATCCGTAAATGGCTTCCGCCCCGAACCTCTTCTTATCCCCCCAGAACCTGGCCTCCTTGGGGACGGCGGCCTGGATCGGGTGCTGCCGCGCAAGGGCCCCCTTGACCGTTTTGTTGACCCCCAACCGGACCACGTCGGTGGCTGTCGCCGACCCTGCTTCTTCAGCAGTACTGCCGCTCGCGCCTAGGCGTCGGAGCTCTTGCCCCTTGAGTTCGGCCTCTGGGTCCCCTCATTCCAGCTTATCCGATCC]

[+] EMBL CA760184             [TTTTTTTTTTTTTTTAGCTAGCATGAGACACTCTTGTCACACTCTTTTATCTCAATGACATGTGAGGTCTACATGATGGATAAGGAATCTCGTCACAAGTGTGGTTATGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGACGAGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCTAGCATAGATGATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTGAGATCCTTGCGGATGTTGAAAGCAGATCCGTAAATGGCTTCCGCCCCGAACCTCTTCTTATCCCCCCAGAACCTGGCCTCCTTGGGGACGGCGGCCTGGATCGGGTGCTGCCGCGCAAGGGCCCCCTTGACCGTTTTGTTGACCCCCAACCGGACCACGTCGGTGGCTGTCGCCGACCCTGCTTCTTCAGCAGTACTGCCGCTCGCGCCTAGGCGTCGGAGCTCTTGCCCCTTGAGTTCGGCCTCTGGGTCCCCTCATTCCAGCTTATCCGATCC]




>consensus_990#0
TTTTTTTTTTTTTTTAGCTAGCATGAGACACTCTTGTCACACTCTTTTATCTCAATGACA
TGTGAGGTCTACATGATGGATAAGGAATCTCGTCACAAGTGTGGTTATGAACCAAAACAA
GCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGAC
GAGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCA
AGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGC
AAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCT
AGCATAGATGATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTG
AGATCCTTGCGGATGTTGAAAGCAGATCCGTAAATGGCTTCCGCCCCGAACCTCTTCTTA
TCCCCCCAGAACCTGGCCTCCTTGGGGACGGCGGCCTGGATCGGGTGCTGCCGCGCAAGG
GCCCCCTTGACCGTTTTGTTGACCCCCAACCGGACCACGTCGGTGGCTGTCGCCGACCCT
GCTTCTTCAGCAGTACTGCCGCTCGCGCCTAGGCGTCGGAGCTCTTGCCCCTTGAGTTCG
GCCTCTGGGTCCCCTCATTCCAGCTTATCCGATCC

consensusID : consensus_990#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 684
fasta sequence

                              [TTTTTTGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGACGGGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCTAGCATAGATAATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTGAGATCCTTGCGGATGTCGAAAGCAGATCCGTAGATGGCTTCCGCCCCGAACCTCTTCTTATCCGCCCAGAACCTGGCCTCCTTGTGGACGGTGGCCTGGATCGGGTGCTGCGGCGCGAGGTCGCCCTTGACGCTATTGTTGACGCCAAAGCGNAGCACGTCGTGTTTCTCGCCGACCTCCTTCTTCACGATGCTGCCGCTCGCCATCGACGCCAAGCTCTTCCTCTTCTTGAGCTCCTTTGGGGAGAAGAAAGGGGCCCGATTGACTGGTGGGGGCCCCCCTTGGTCTCGGCTCCTGACCTAATGAAGCTTTATGATACGCGGGAGCCCAAGGCGGGGGCAGGACCCGCCGTTCGCCTTAAGTTAG]

[+] EMBL CA760185             [TTTTTTGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGACGGGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCTAGCATAGATAATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTGAGATCCTTGCGGATGTCGAAAGCAGATCCGTAGATGGCTTCCGCCCCGAACCTCTTCTTATCCGCCCAGAACCTGGCCTCCTTGTGGACGGTGGCCTGGATCGGGTGCTGCGGCGCGAGGTCGCCCTTGACGCTATTGTTGACGCCAAAGCGNAGCACGTCGTGTTTCTCGCCGACCTCCTTCTTCACGATGCTGCCGCTCGCCATCGACGCCAAGCTCTTCCTCTTCTTGAGCTCCTTTGGGGAGAAGAAAGGGGCCCGATTGACTGGTGGGGGCCCCCCTTGGTCTCGGCTCCTGACCTAATGAAGCTTTATGATACGCGGGAGCCCAAGGCGGGGGCAGGACCCGCCGTTCGCCTTAAGTTAG]




>consensus_990#1
TTTTTTGAACCAAAACAAGCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATG
AGGAGAACAGTGCAAGACGGGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATC
GGTCCCTTTGACAAACCAAGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAG
CTGTCAAAATCTTGGGGCAAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCA
GTCAGCGCCTCGTATCCTAGCATAGATAATGGCAATGCACCAGGGGGCCTTTGGAACTTG
GAGAGGATTTGGGCATTGAGATCCTTGCGGATGTCGAAAGCAGATCCGTAGATGGCTTCC
GCCCCGAACCTCTTCTTATCCGCCCAGAACCTGGCCTCCTTGTGGACGGTGGCCTGGATC
GGGTGCTGCGGCGCGAGGTCGCCCTTGACGCTATTGTTGACGCCAAAGCGNAGCACGTCG
TGTTTCTCGCCGACCTCCTTCTTCACGATGCTGCCGCTCGCCATCGACGCCAAGCTCTTC
CTCTTCTTGAGCTCCTTTGGGGAGAAGAAAGGGGCCCGATTGACTGGTGGGGGCCCCCCT
TGGTCTCGGCTCCTGACCTAATGAAGCTTTATGATACGCGGGAGCCCAAGGCGGGGGCAG
GACCCGCCGTTCGCCTTAAGTTAG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_990#0      TTTTTTTTTTTTTTTAGCTAGCATGAGACACTCTTGTCACACTCTTTTATCTCAATGACA 60
consensus_990#1      ------------------------------------------------------------
                                                                                 

consensus_990#0      TGTGAGGTCTACATGATGGATAAGGAATCTCGTCACAAGTGTGGTTATGAACCAAAACAA 120
consensus_990#1      ------------------------------------------TTTTTTGAACCAAAACAA 18
                                                                 ** *************

consensus_990#0      GCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGAC 180
consensus_990#1      GCATCGAAATCTCAGTCTAAAGAGCGACATAGATATTGAATGAGGAGAACAGTGCAAGAC 78
                     ************************************************************

consensus_990#0      GAGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCA 240
consensus_990#1      GGGAAATACATTTTGTGAAATCAATTGAAACTAGGGCAAATCGGTCCCTTTGACAAACCA 138
                     * **********************************************************

consensus_990#0      AGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGC 300
consensus_990#1      AGGCGAACCTCCATTCCGTGGTGCATGTCTGGAGCATGGAAGCTGTCAAAATCTTGGGGC 198
                     ************************************************************

consensus_990#0      AAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCT 360
consensus_990#1      AAGTTGAGATAATCTTCAAACCCGAAATCATCCAAGGAACCAGTCAGCGCCTCGTATCCT 258
                     ************************************************************

consensus_990#0      AGCATAGATGATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTG 420
consensus_990#1      AGCATAGATAATGGCAATGCACCAGGGGGCCTTTGGAACTTGGAGAGGATTTGGGCATTG 318
                     ********* **************************************************

consensus_990#0      AGATCCTTGCGGATGTTGAAAGCAGATCCGTAAATGGCTTCCGCCCCGAACCTCTTCTTA 480
consensus_990#1      AGATCCTTGCGGATGTCGAAAGCAGATCCGTAGATGGCTTCCGCCCCGAACCTCTTCTTA 378
                     **************** *************** ***************************

consensus_990#0      TCCCCCCAGAACCTGGCCTCCTTGGGGACGGCGGCCTGGATCGGGTGCTGCCGCGCAAGG 540
consensus_990#1      TCCGCCCAGAACCTGGCCTCCTTGTGGACGGTGGCCTGGATCGGGTGCTGCGGCGCGAGG 438
                     *** ******************** ****** ******************* **** ***

consensus_990#0      GCCCCCTTGACCGTTTTGTTGACCCCCAACCGGACCACGTCGGTGGCTGTCGCCGACCCT 600
consensus_990#1      TCGCCCTTGACGCTATTGTTGACGCCAAAGCGNAGCACGTCG-TGTTTCTCGCCGACC-T 496
                      * ********  * ******** ** ** ** * ******* **  * ********* *

consensus_990#0      GCTTCTTCAGCAGTACTGCCGCTCGCGCCTAGGCGTCGGAGCTCTTGCCC--CTTGAGTT 658
consensus_990#1      CCTTCTTCA-CGATGCTGCCGCTCGC-CATCGACGCCA-AGCTCTTCCTCTTCTTGAGCT 553
                      ******** *  * *********** * * * ** *  ******* * *  ****** *

consensus_990#0      CGGCCTCTGGGTCCCCTCATTCCAGCTTATCCGATCC----------------------- 695
consensus_990#1      CCTTTGGGGAGAAGAAAGGGGCCCGATTGACTGGTGGGGGCCCCCCTTGGTCTCGGCTCC 613
                     *       * *          ** * **  * * *                         

consensus_990#0      ------------------------------------------------------------
consensus_990#1      TGACCTAATGAAGCTTTATGATACGCGGGAGCCCAAGGCGGGGGCAGGACCCGCCGTTCG 673
                                                                                 

consensus_990#0      -----------
consensus_990#1      CCTTAAGTTAG 684