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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1173 fasta sequence
[CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTTCCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGGCCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTTGTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAGAAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAATAGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAATCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATTGGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGCACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC-TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACGATTCACTTGCAAAAAA]
[+] EMBL AK064804 [CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTTCCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGGCCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTTGTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAGAAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAATAGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAATCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATTGGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGCACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACG ]
[+] EMBL CF338834 [ CTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGCGGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTCGGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGTCTCCGCCGTGCCGTCCCAGAGTGTTTCCTG ]
[+] EMBL OS07202A [ TCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTTGGGGGACCTAGTTCGGCACA ]
[+] EMBL OSC03971 [ TCAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGT ]
[+] EMBL C98110 [ CAACGTGATTCACCTGCTCAGCTTAAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCACGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTC TTGGGGGACCTAGTTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGATCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTACGATTCACTTGCAAAAAA]
[+] EMBL C98028 [ CCCATTGTC TTGGGGGACCTAGTTCGGCANAATCCAATGTTTGCTGTGAAGCACTTTCNCCCTCNCCCCTGTATAGCCTTGATCANNAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTCCTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATGAAAATTTTCCAGCTNCGATTCACTTGCAAAAAA]
consensusID : consensus_9900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 672 fasta sequence
[AATAGGCCCCCAATGGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAATAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATTGGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGCGCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTTAAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCACGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGTATAATTCTTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAAACCAAAGCTGTGAAATAATGTTCTTGATCTGGCAGTGAATTGGTAATACCCCCTCCGTTTTTTAAAAAAAAAAAAAAAA]
[-] EMBL CA762651 [AATAGGCCCCCAATGGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAATAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATTGGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGCGCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTTAAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCAGTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAGGACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCACGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATCCAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGTATAATTCTTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAAACCAAAGCTGTGAAATAATGTTCTTGATCTGGCAGTGAATTGGTAATACCCCCTCCGTTTTTTAAAAAAAAAAAAAAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9900#0 CCCCTTCCCCTTCCCCTTCACTTCCCCTCTCCTCAACTCCACCGCCTTCCGCCTCGCTGC 60
consensus_9900#1 ------------------------------------------------------------
consensus_9900#0 GGAGCCCCCGCGGCCATGCTGACCCCGCGCGTCCTCAAGCTCTCGCTGCTCCGCCGCCTC 120
consensus_9900#1 ------------------------------------------------------------
consensus_9900#0 GGCGCCGCCTCCGCCGCCCGCGCGGCCGAGCGGCCTCCGCCGTGCCGTCCCAGAGTGTTT 180
consensus_9900#1 ------------------------------------------------------------
consensus_9900#0 CCTGCGAGGAGTAATCATTCTCGAGGTTATTCCAGTGAAGGAGGCTCCAAGTATAATAGG 240
consensus_9900#1 ------------------------------------------------------------
consensus_9900#0 CCAATGAGACAATTTGCTGAAGAGAATGAGGCGAATCCTCAGCCGCTGATATATTATGTT 300
consensus_9900#1 ------------------------------------------------------------
consensus_9900#0 GTTCCATCTGCTCTACTAGTTTTTGCTGGACTAGTCACTTTTGTTCACTATAATGATGAG 360
consensus_9900#1 ------------------------------------------------------------
consensus_9900#0 AAGCGTGCAGTTACCCAAGAAGCACAGCAGACCAGTGTTCCCAAAAGGTGTACTACCAAT 420
consensus_9900#1 ---------------------------------------------------------AAT 3
***
consensus_9900#0 AGACCTGCAATTGGAGGGCCATTTAAGCTATATGATACAGAAAACAAAGAGGTGACTGAA 480
consensus_9900#1 AGGCCCCCAAT-GGGGGGCCCTTCCACCTATTTGATTCAGAAACCACCGAGGGGGGTGAA 62
** ** **** ** ***** ** * **** **** ****** ** **** * ****
consensus_9900#0 TCAAAGCTTCGAGGAAATTGGACACTGATGTACTTTGGCTATACATCATGCCCAGATATT 540
consensus_9900#1 TAAAAGCTTCGAGGCAATTGGACGCTGATGTACTTTGGCTATCCATCATGCCTAGATATT 122
* ************ ******** ****************** ********* *******
consensus_9900#0 GGCCCAGCAGAAGTTCAGAAGATGGCTGATGTTGTCAAGTTGTTAGAGTCAAAATATGGC 600
consensus_9900#1 GGCCCAGCAAAAGTTCAGAAGATGGCTGATGTCGTCAGGTTGTAAGAGTCAAAATATGGC 182
********* ********************** **** ***** ****************
consensus_9900#0 ACCAAGATTACACCACTCTTTATCACAATTGATCCTCAACGTGATTCACCTGCTCAGCTT 660
consensus_9900#1 GCCAAGATTGCCCCACTCTTTATCACAATTGATCCTCAACGTGATTCGCCTGCTCAGCTT 242
******** * *********************************** ************
consensus_9900#0 AAGGCATATCTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCA 720
consensus_9900#1 AAGGCATATTTTAGTGAGTTTGACCCAAGAATAATAGGACTAACGGGATCCATCAATGCA 302
********* **************************************************
consensus_9900#0 GTAAGACAGATTGCACAGGAATACCGTGTTTTCTTCAAAAAGGTTGATGACATTGGTCAG 780
consensus_9900#1 GTAAGACAGATTGCACAGGAATACCGTGTTTTTTTCAAAAAGGTTGATGACATTGGTCAG 362
******************************** ***************************
consensus_9900#0 GACTATCTTGTAGAAAGCTCTCATAACATGTACTTGCTAGATCCATGCTTGGAGACAGCA 840
consensus_9900#1 GACTATCTTGTAGAAAGCTCTCATAACATGTACCTGCTAGATCCATGCTGGGAGACAGCA 422
********************************* *************** **********
consensus_9900#0 CGATGCTTTGGAGCAGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATC 900
consensus_9900#1 CGATGCCTTGGAGCTGAGTATGAGGCATCTGATCTTGCTGAGGCGATAACTTTGGAGATC 482
****** ******* *********************************************
consensus_9900#0 CAGAAAGCTTCTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGGACCTAG 960
consensus_9900#1 CAGAAAGCTTTTAAATCATCAACAAACTAGTGTAGCTGCCCATTGTCTTGGGGG-TATAA 541
********** ******************************************* **
consensus_9900#0 TTCGGCACAATCCAATGTTTGCTGTGAAGCACTTTCTCCCTCTCCCCTGTATAGCCTTGA 1020
consensus_9900#1 TTC--------TTGACTCTTGGTACTTATTTGTTTCAATTATTTGCAGTTGACATATTAA 593
*** * *** * * **** * * * ** *
consensus_9900#0 TCACAAAAGGGTGACATGGTGAACCTCTCATTTAGCTCTGCCACCAACTGATTCCAGCTC 1080
consensus_9900#1 AC-CAAAGCTGTGAAATAATG--TTCTTGATCTGGCAGTG-----AATTGGTAATACCCC 645
* **** **** ** ** * ** * ** ** ** ** * * * *
consensus_9900#0 CTGTTCCCCGCTCCTTTGTGTGTAAGAATTGAGCAAAACTGTACAGCGCCTCCTCCGATG 1140
consensus_9900#1 CT-----CCGTTTTTTAAAAAAAAAAAAAAAA---------------------------- 672
** *** * ** ** ** *
consensus_9900#0 AAAATTTTCCAGCTACGATTCACTTGCAAAAAA 1173
consensus_9900#1 ---------------------------------
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||