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These datas are free for academic use only, please contact me for any other use. Oryza sativa see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_9905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 732 fasta sequence
[GGTCCATTCCAAAGTTGCAATCAATCTGTCTCGATTATTGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTACAAGGTGACGGTGCAGGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTGGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTACGGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATATAAAAGAATCTAGAATCTGGATAGTTGTCTAGATTC]
[+] EMBL AK068537 [GGTCCATTCCAAAGTTGCAATCAATCTGTCTCGATTATTGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTACAAGGTGACGGTGCAGGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTGGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTACGGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATATAAAAGAATCTAGAATCTGGATAGTTGTCTAGATTC]
consensusID : consensus_9905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 493 fasta sequence
[CCTTNTTCCAGCATGAAAAGGGTTNCAGTCGTTGGAGATTAAACAGGAAGCCAGTNACAAGGTGACGGTGCAGGGGGTTCGTGGAGCCCGCACAAGGTGGTNGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTTGGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTTAGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATATAAAAGAATCTAGAATCTGGATAGTTGTCTAGATTCATAGTAAAAAAAA]
[+] EMBL AU031243 [CCTTNTTCCAGCATGAAAAGGGTTNCAGTCGTTGGAGATTAAACAGGAAGCCAGTNACAAGGTGACGGTGCAGGGGGTTCGTGGAGCCCGCACAAGGTGGTNGAAGCGGGTGCAGGCGACGGGGAAGAAGGCGGAGATCTTGGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTTAGCTCCGCCGCCGCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAACGCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAGATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATATAAAAGAATCTAGAATCTGGATAGTTGTCTAGATTCATAGTAAAAAAAA]
[+] EMBL C29134 [ ggTGGAGA TAAACAGGAAG CAGT ACAAGGTGACGGTGCA GGGGTTCGTGGAG CCGCACAAGGTGGT GAAGCGGGTNCAGGCGACGGGGAAGAAGNCGNAGATC TNGCCCTACGTGCCCTACACCCTCGTCGCCCACCCCTACGCCGCCCCGGCCTACGACAAGAGGGCTCCCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGNCCGTC ]
consensusID : consensus_9905#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 476 fasta sequence
[TGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCANCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACGCCCTCTCCAGCATGAAAGGGGTGCAGTCGGTGGAGATAAACAGGGAAGCAGTACAA-GTGACGGTGCANGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCANGCGACGGGGAAGAAGGCGGAGATCTGGCCCTAC]
[+] EMBL AU031244 [TGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCANCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACGCCCTCTCCAGCATGAAAGGGGTGCAGTCGGTGGAGATAAACAGGGAAGCAGTACAA GTGACGGTGCANGGGTTCGTGGAGCCGCACAAGGTGGTGAAGCGGGTGCANGCGACGGGGAAGAAGGCGGAGATCTGGCCCTAC]
[+] EMBL C27244 [ CTCTCTGCTCTGAGTGTGACTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGGTGAAGTGTTCTTGCCCTGTNCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCGGTGAGTTTNAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTTCGACGGCTGCNAGCTCAAAGTCAGGAACGGCCTNTCCAGCATGAAAGGGGTTCAGTCGGTNGAGAT AACA GGAAGCAGTACAAGGTTACGGT CAAGGGTTCGT GAGCCnac ]
consensusID : consensus_9905#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 371 fasta sequence
[AGAGATTACAGTACTTGATCTCTTATCTCTTTCCAGGGAAAAGTTTCTTCTATAATTAATTAGTAGAGTTTGCACTTGATTAGTAACTTTCATTAGAGGCAAAGTTGAGAAGCATGGGAGGCACGCTGCACTACCTGTCTGATCTGCTGCTGGGTGGCAGCAGCGGCAAGACTAGCCACAAGAAGAAGAGGCAGTTCAACACGGTGGAGCTGAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAGGTCAGGAACACCCTTGCCAACATGAAAGGGGTNCAGTCGGTGGAGATAAACAGGAAGCAGCAGAAGGTGACGGTTCAGGGGATTGTGGNCACGCAGCGGGGTTCTTCGGCGGGCGCAGTCGAC]
[+] EMBL OSS15649A [AGAGATTACAGTACTTGATCTCTTATCTCTTTCCAGGGAAAAGTTTCTTCTATAATTAATTAGTAGAGTTTGCACTTGATTAGTAACTTTCATTAGAGGCAAAGTTGAGAAGCATGGGAGGCACGCTGCACTACCTGTCTGATCTGCTGCTGGGTGGCAGCAGCGGCAAGACTAGCCACAAGAAGAAGAGGCAGTTCAACACGGTGGAGCTGAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAGGTCAGGAACACCCTTGCCAACATGAAAGGGGTNCAGTCGGTGGAGATAAACAGGAAGCAGCAGAAGGTGACGGTTCAGGGGATTGTGGNCACGCAGCGGGGTTCTTCGGCGGGCGCAGTCGAC]
consensusID : consensus_9905#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 158 fasta sequence
[GTCGTGACTCCTTCTNGGCTGGCGGCGGGAGAAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACCGNCCTCCTCCAAGCATGAAAAGGTATAAA]
[+] EMBL D43436 [GTCGTGACTCCTTCTNGGCTGGCGGCGGGAGAAGCAGCCGTCGGAGGTACAAGAAGAGGAAGCAGTTCCAGACGGTGGAGCTCAAGGTGAGGATGGACTGCGACGGCTGCGAGCTCAAAGTCAGGAACCGNCCTCCTCCAAGCATGAAAAGGTATAAA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_9905#3 ------------------------------------------------------------
consensus_9905#4 ------------------------------------------------------------
consensus_9905#2 ------------------------------------------------------------
consensus_9905#0 GGTCCATTCCAAAGTTGCAATCAATCTGTCTCGATTATTGCCTCTCTGCTCTGAGTGTGA 60
consensus_9905#1 ------------------------------------------------------------
consensus_9905#3 ------------------------------------------------------------
consensus_9905#4 ------------------------------------------------------------
consensus_9905#2 ------------------------------------------------------------
consensus_9905#0 CTGTCAATCTGTGAGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATC 120
consensus_9905#1 ------------------------------------------------------------
consensus_9905#3 ------------------------------------------------------------
consensus_9905#4 ------------------------------------------------------------
consensus_9905#2 ------------------------------------------------------------
consensus_9905#0 GATCATTAGTAGGTGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAA 180
consensus_9905#1 ------------------------------------------------------------
consensus_9905#3 ------------------------------------------------------------
consensus_9905#4 ------------------------------------------------------------
consensus_9905#2 -------------------------TGCCTCTCTGCTCTGAGTGTGACTGTCAATCTGTG 35
consensus_9905#0 CTGGTTGGGTTCGGTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCAT 240
consensus_9905#1 ------------------------------------------------------------
consensus_9905#3 -------------------------------AGAGATTACAGTACTTGATCTCTTATCTC 29
consensus_9905#4 ------------------------------------------------------------
consensus_9905#2 AGCTTAGCTAGTGACTGGCCATTGCACGAGAAAAGAACAGGTTGATCGATCATTAGTAGG 95
consensus_9905#0 GGATTACCTGTCTGATCTTCTCGGCGGCGGCGGGAGCAGCAGCCGTCGGAGGTACAAGAA 300
consensus_9905#1 -------------CCTTNTTCCAGCA-TGAAAAGGGTTNCAGTCGTTGGAGATTAAACAG 46
consensus_9905#3 TT-----TCCAGGGAAAAGTTTCTTCTATAATTAATTAGTAGAGTTTGCACTTGA--TTA 82
consensus_9905#4 ------------------------------------------------------------
consensus_9905#2 TGAAGTGTTCTTGCCCTGTTCTTTTCTTGGTTTCTTGGGTAAACCAACTGGTTGGGTTCG 155
consensus_9905#0 GAG---GAAGCAGTACAAGGTGACGGTGCAGGGG-TTCGTGGAGCC-GCACAAGG---TG 352
consensus_9905#1 GAA---GCCA-GTNACAAGGTGACGGTGCAGGGGGTTCGTGGAGCCCGCACAAGG---TG 99
consensus_9905#3 GTAACTTTCATTAGAGGCAAAGTTG--AGAAGCATGGGAGGCACGCTGCACTACCTGTCT 140
consensus_9905#4 --------------------------------------------GTCGTGACTCCT-TCT 15
consensus_9905#2 GTGAGTTTGAGAACTTCAGAAACTGTAACAACAATGGGAGGCACCATGGATTACCTGTCT 215
consensus_9905#0 GTG-AAGCGGGTGCAGGCGACGGGG----AAGAAGGCGGAGATCT-GGCCCTACGTGCCC 406
consensus_9905#1 GTNGAAGCGGGTGCAGGCGACGGGG----AAGAAGGCGGAGATCTTGGCCCTACGTGCCC 155
* * * *
consensus_9905#3 GATCTGCT-GCTGG--GTGGCAGCAGCGGCAAGACTAGCCACAAGAAGAAGAGGCAGTTC 197
consensus_9905#4 NGGCTGGC-GGCGG--GAGA-AGCAGCCGTCGGA---GGTACAAGAAGAGGAAGCAGTTC 68
consensus_9905#2 GATCTTCTCGGCGGCGGCGGGAGCAGCANCCGTCGGAGGTACAAGAAGAGGAAGCAGTTC 275
consensus_9905#0 TACACCCTCGTCGCCCACCCCTACGCCGCCCCGGC---CTACGACAAGAGG-----GCTC 458
consensus_9905#1 TACACCCTCGTCGCCCACCCCTACGCCGCCCCGGC---CTACGACAAGAGG-----GCTC 207
* * * * ** * **** * * **
consensus_9905#3 AACACGGTGGAGCTGAAGGTGAGGATGG-ACTGCGACGGCTGCGAGCTCAAGGTCAGGAA 256
consensus_9905#4 CAGACGGTGGAGCTCAAGGTGAGGATGG-ACTGCGACGGCTGCGAGCTCAAAGTCAGGAA 127
consensus_9905#2 CAGACGGTGGAGCTCAAGGTGAGGATGG-ACTGCGACGGCTGCGAGCTCAAAGTCAGGAA 334
consensus_9905#0 CCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCTACGGCTCCGCCG 518
consensus_9905#1 CCCCCGGCCACGTCCGCCGCGTCGACGCCGTCATGCCCGTCGCCAGCT-TAGCTCCGCCG 266
*** * * * ** * * * * ** **** ** *
consensus_9905#3 C--ACCCTTGCCAA-CATGAAAGGGGTNCAGTCGGTGGAGATAAACA-GGAAGCAGCAGA 312
consensus_9905#4 CCGNCCTCCTCCAAGCATGAAAAGGTATAAA----------------------------- 158
consensus_9905#2 C--GCCCTCTCCAG-CATGAAAGGGGTGCAGTCGGTGGAGATAAACA-GGGAAGCAGTAC 390
consensus_9905#0 CC-GCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAAC 577
consensus_9905#1 CC-GCTGCCGCCGCGCCGGAGGAGCGCCTCACCACCATGTTCAGCGACGAGAACCCCAAC 325
* * ** * ** *
consensus_9905#3 AGGTGACGGTTCAGGGGA----TTGTGGNCACGCAGCGGGGT--TCTTCGGCGGGCGCAG 366
consensus_9905#4 ------------------------------------------------------------
consensus_9905#2 AAGTGACGGTGCANGGGT----TCGTGGAGCCGCA-CAAGGT--GGTGAAGCGGGTGCAN 443
consensus_9905#0 GCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAG 637
consensus_9905#1 GCCTGCTCCATCATGTGAATTACTGTAACTGAATATTAGTGTAATCTCTTCAGAGTTCAG 385
consensus_9905#3 TCGAC------------------------------------------------------- 371
consensus_9905#4 ------------------------------------------------------------
consensus_9905#2 GCGACGGGGAAGAAGGCGGAGATCTGGCCCTAC--------------------------- 476
consensus_9905#0 ATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATAT 697
consensus_9905#1 ATGAATGTACGAAATGTATGTGCAGATATGAGAGATTGTACTCCCTCCATCCCAAAATAT 445
consensus_9905#3 ------------------------------------------------
consensus_9905#4 ------------------------------------------------
consensus_9905#2 ------------------------------------------------
consensus_9905#0 AAAAGAATCTAGAATCTGGATAGTTGTCTAGATTC------------- 732
consensus_9905#1 AAAAGAATCTAGAATCTGGATAGTTGTCTAGATTCATAGTAAAAAAAA 493
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| Copyright Mon Feb 16 12:49:02 CET 2004 Hubert Wassner (hubert.wassner@noos.fr) | ||||